# TARGET T0367 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0367.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 60 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.267 0.128 0.334 0.040 0.116 0.014 0.019 0.018 0.011 0.051 0.001 2 D 0.500 0.025 0.183 0.065 0.013 0.145 0.035 0.005 0.021 0.005 0.004 3 E 0.951 0.007 0.007 0.028 0.001 0.003 0.001 0.001 0.001 0.001 0.001 4 L 0.967 0.005 0.005 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 E 0.990 0.002 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 L 0.992 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 R 0.982 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 I 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 R 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 K 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 A 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 E 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 K 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.975 0.001 0.001 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 V 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 Q 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 D 0.977 0.001 0.001 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 A 0.982 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 K 0.984 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 K 0.986 0.001 0.003 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 E 0.914 0.001 0.003 0.077 0.001 0.002 0.001 0.001 0.001 0.001 0.001 22 F 0.830 0.008 0.019 0.111 0.002 0.007 0.015 0.003 0.004 0.001 0.001 23 E 0.923 0.009 0.013 0.044 0.001 0.003 0.005 0.001 0.001 0.001 0.001 24 M 0.517 0.014 0.028 0.422 0.004 0.003 0.005 0.003 0.004 0.001 0.001 25 G 0.232 0.009 0.104 0.037 0.039 0.006 0.142 0.293 0.004 0.134 0.001 26 L 0.771 0.044 0.072 0.063 0.010 0.024 0.006 0.002 0.005 0.003 0.001 27 Y 0.903 0.028 0.018 0.034 0.004 0.007 0.002 0.001 0.003 0.001 0.001 28 E 0.965 0.005 0.008 0.015 0.001 0.004 0.001 0.001 0.001 0.001 0.001 29 R 0.961 0.006 0.005 0.023 0.001 0.002 0.001 0.001 0.001 0.001 0.001 30 C 0.982 0.002 0.003 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 C 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 S 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 M 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 H 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 A 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 A 0.993 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 K 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 M 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 L 0.972 0.005 0.004 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 L 0.848 0.010 0.018 0.115 0.002 0.003 0.002 0.001 0.001 0.001 0.001 48 G 0.604 0.032 0.052 0.148 0.030 0.009 0.075 0.031 0.008 0.010 0.001 49 Y 0.208 0.041 0.122 0.565 0.017 0.006 0.031 0.001 0.005 0.002 0.001 50 G 0.013 0.002 0.016 0.017 0.015 0.003 0.156 0.722 0.001 0.054 0.001 51 R 0.096 0.349 0.390 0.056 0.023 0.048 0.004 0.001 0.032 0.001 0.001 52 D 0.084 0.132 0.509 0.059 0.027 0.111 0.032 0.004 0.035 0.006 0.002 53 S 0.451 0.075 0.275 0.099 0.035 0.033 0.009 0.007 0.009 0.004 0.002 54 K 0.778 0.037 0.042 0.118 0.010 0.006 0.002 0.002 0.003 0.002 0.001 55 T 0.360 0.140 0.145 0.235 0.057 0.016 0.020 0.006 0.014 0.006 0.001 56 H 0.307 0.112 0.166 0.208 0.030 0.059 0.059 0.013 0.038 0.005 0.001 57 R 0.521 0.095 0.179 0.089 0.033 0.011 0.041 0.014 0.007 0.009 0.001 58 G 0.681 0.009 0.043 0.017 0.035 0.003 0.016 0.092 0.001 0.101 0.001 59 T 0.941 0.015 0.018 0.018 0.002 0.004 0.001 0.001 0.001 0.001 0.001 60 I 0.981 0.006 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 Y 0.988 0.004 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 L 0.978 0.002 0.002 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 I 0.899 0.009 0.011 0.073 0.001 0.003 0.001 0.001 0.003 0.001 0.001 64 W 0.939 0.012 0.021 0.013 0.004 0.002 0.004 0.002 0.001 0.002 0.001 65 E 0.912 0.010 0.013 0.053 0.003 0.002 0.003 0.001 0.001 0.001 0.001 66 C 0.565 0.019 0.025 0.375 0.004 0.003 0.005 0.002 0.003 0.001 0.001 67 R 0.597 0.035 0.070 0.055 0.014 0.029 0.142 0.025 0.024 0.009 0.001 68 E 0.607 0.179 0.140 0.029 0.022 0.012 0.002 0.001 0.006 0.002 0.001 69 E 0.691 0.045 0.177 0.043 0.003 0.027 0.004 0.001 0.008 0.001 0.002 70 L 0.373 0.052 0.089 0.458 0.009 0.006 0.004 0.001 0.009 0.001 0.001 71 G 0.085 0.008 0.038 0.019 0.054 0.005 0.131 0.500 0.005 0.154 0.001 72 L 0.209 0.187 0.377 0.156 0.018 0.033 0.003 0.001 0.013 0.001 0.001 73 S 0.136 0.130 0.585 0.041 0.028 0.045 0.007 0.003 0.017 0.008 0.001 74 D 0.513 0.054 0.225 0.072 0.038 0.059 0.012 0.004 0.016 0.006 0.001 75 D 0.874 0.008 0.018 0.075 0.004 0.004 0.008 0.005 0.003 0.001 0.001 76 D 0.802 0.007 0.014 0.164 0.002 0.005 0.003 0.002 0.003 0.001 0.001 77 C 0.871 0.015 0.039 0.055 0.003 0.008 0.004 0.001 0.003 0.001 0.001 78 S 0.904 0.009 0.016 0.056 0.003 0.004 0.005 0.002 0.001 0.001 0.001 79 K 0.796 0.034 0.027 0.110 0.006 0.009 0.007 0.001 0.008 0.001 0.001 80 L 0.677 0.064 0.152 0.069 0.003 0.021 0.004 0.001 0.008 0.001 0.001 81 S 0.901 0.018 0.027 0.028 0.003 0.009 0.009 0.001 0.003 0.001 0.001 82 R 0.856 0.046 0.031 0.041 0.014 0.003 0.003 0.002 0.002 0.001 0.001 83 A 0.749 0.032 0.047 0.152 0.003 0.008 0.002 0.001 0.004 0.001 0.001 84 F 0.608 0.114 0.114 0.040 0.039 0.012 0.021 0.005 0.038 0.009 0.001 85 D 0.659 0.023 0.159 0.087 0.008 0.026 0.023 0.004 0.004 0.003 0.003 86 L 0.538 0.086 0.111 0.222 0.015 0.013 0.005 0.002 0.007 0.001 0.001 87 R 0.373 0.184 0.177 0.142 0.038 0.032 0.021 0.007 0.022 0.003 0.001 88 E 0.116 0.301 0.340 0.027 0.063 0.050 0.019 0.002 0.075 0.006 0.001 89 E 0.499 0.078 0.285 0.074 0.010 0.035 0.003 0.002 0.009 0.001 0.004 90 S 0.407 0.125 0.217 0.090 0.087 0.020 0.019 0.010 0.014 0.012 0.001 91 D 0.420 0.105 0.122 0.236 0.016 0.051 0.018 0.003 0.026 0.001 0.002 92 Y 0.230 0.123 0.163 0.351 0.043 0.017 0.034 0.007 0.028 0.004 0.001 93 G 0.146 0.028 0.164 0.054 0.110 0.007 0.068 0.203 0.004 0.214 0.001 94 I 0.288 0.252 0.198 0.192 0.030 0.017 0.005 0.002 0.013 0.002 0.001 95 Y 0.142 0.125 0.350 0.122 0.070 0.051 0.081 0.020 0.025 0.012 0.002 96 K 0.192 0.267 0.379 0.051 0.048 0.020 0.014 0.005 0.019 0.004 0.001 97 E 0.128 0.171 0.506 0.052 0.035 0.061 0.015 0.006 0.015 0.004 0.007 98 V 0.075 0.343 0.415 0.081 0.042 0.032 0.003 0.001 0.009 0.001 0.001 99 S 0.003 0.264 0.512 0.002 0.129 0.048 0.001 0.001 0.038 0.004 0.001 100 K 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 D 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 L 0.986 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 K 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 I 0.990 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 108 K 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 109 D 0.961 0.001 0.001 0.039 0.001 0.001 0.001 0.001 0.001 0.001 0.001 110 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 113 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 114 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 116 K 0.994 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 A 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 118 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 119 N 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 120 A 0.970 0.001 0.001 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 121 V 0.892 0.005 0.011 0.086 0.001 0.002 0.001 0.001 0.002 0.001 0.001 122 N 0.816 0.008 0.028 0.100 0.003 0.012 0.025 0.003 0.003 0.002 0.001 123 K 0.727 0.033 0.057 0.155 0.007 0.006 0.007 0.003 0.004 0.001 0.001 124 N 0.324 0.049 0.087 0.450 0.013 0.022 0.027 0.007 0.020 0.001 0.001 125 R 0.168 0.114 0.259 0.102 0.065 0.030 0.111 0.075 0.038 0.036 0.001