# List of top-scoring protein chains for T0367.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o3uA 135 2.21e-19 a.24.16.3 86615 1wolA 122 2.40e-19 1ufbA 127 7.17e-18 a.24.16.3 99331 1gs5A 258 2.60e+00 c.73.1.2 70395 1xrhA 351 3.86e+00 1vdrA 162 3.95e+00 1vdrA c.71.1.1 34893 1sauA 115 4.86e+00 1kzhA 555 9.06e+00 c.89.1.1 73361 2fxfA 170 9.50e+00 2b5gA 171 9.56e+00 2g3tA 179 9.64e+00 2b5gB 171 1.01e+01 1wehA 171 1.02e+01 2c2lA 281 1.05e+01 2gfvA 427 1.15e+01 2b3uA 171 1.16e+01 2gfyA 427 1.18e+01 1kas 412 1.19e+01 1dd8A c.95.1.1,c.95.1.1 35964,35965 2gfwA 427 1.21e+01 1o5zA 442 1.29e+01 c.59.1.2,c.72.2.2 92530,92531 2h01A 192 1.65e+01 1i60A 278 1.70e+01 c.1.15.4 71118 1n6zA 105 1.70e+01 d.263.1.1 85369 2f42A 179 1.97e+01 1qdnA 204 2.03e+01 1qcsA b.52.2.3,d.31.1.1 26928,38462 1qcsA 211 2.06e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 2coyA 112 2.09e+01 1ryiA 382 2.13e+01 1adt 356 2.30e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1anv 356 2.32e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17890,45365,45371 1o51A 114 2.46e+01 d.58.5.4 92480 1bcfA 158 2.49e+01 1bcfA a.25.1.1 16648 1ng4A 390 2.61e+01 c.3.1.2,d.16.1.3 85666,85667 1jd0A 263 2.71e+01 2cba b.74.1.1 62888 2etbA 256 2.77e+01 2prd 174 2.95e+01 2prd b.40.5.1 25435 1qx4A 274 2.99e+01 b.43.4.2,c.25.1.1 104624,104625 1i7pA 274 3.01e+01 b.43.4.2,c.25.1.1 66048,66049 1esp 317 3.01e+01 1hyt d.92.1.2 58979 2etcA 274 3.18e+01 1e3jA 352 3.21e+01 1e3jA b.35.1.2,c.2.1.1 24765,29781 1mxiA 160 3.30e+01 c.116.1.1 79646 1aun 208 3.43e+01 1thv b.25.1.1 23900 1v47A 349 3.65e+01 b.122.1.3,c.26.1.5 100292,100293 1kkoA 413 3.72e+01 c.1.11.2,d.54.1.1 68675,68676 2gmyA 153 3.79e+01 2g7rA 117 3.97e+01 2cpqA 91 4.09e+01 1h2vZ 156 4.14e+01 d.58.7.1 76595 1k2wA 256 4.23e+01 c.2.1.2 90927 1eh9A 558 4.42e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21858,27785,28772 1ehaA 558 4.43e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21859,27786,28773 1h6kZ 98 4.55e+01 d.58.7.1 60686 1lmzA 187 4.72e+01 a.96.1.4 74037 1umkA 275 4.80e+01 1ybjA 178 4.93e+01 1dk0A 188 4.97e+01 1b2vA d.35.1.1 38530 1v3wA 173 5.11e+01 b.81.1.5 100291 2cn4A 173 5.31e+01 1vqsA 116 5.41e+01 1l2fA 369 5.51e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 91044,91045,91046,91047 1ndh 272 5.56e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1nnt 328 5.69e+01 1nnt c.94.1.2 35884 1tfaA 329 5.74e+01 1nnt c.94.1.2 35880 1iejA 332 5.76e+01 1nnt c.94.1.2 62328 1awqA 164 5.81e+01 2cpl b.62.1.1 27461 1m9eA 164 5.82e+01 b.62.1.1 84894 1yndA 165 5.83e+01 1h6kX 97 5.97e+01 d.58.7.1 60684 2gkwA 192 6.29e+01 1na0A 125 6.30e+01 k.38.1.1 85479 1c05A 159 6.40e+01 1c05A d.66.1.2 39559 1txqA 93 6.40e+01 1lf7A 182 6.47e+01 b.60.1.1 73878 1yiqA 689 6.58e+01 1ovb 159 6.66e+01 1nnt c.94.1.2 35875 1gv8A 159 6.69e+01 c.94.1.2 65606 1yxrA 77 6.69e+01 2alfA 164 6.71e+01 1gvcA 157 6.78e+01 c.94.1.2 65607 1rf3A 200 6.82e+01 b.8.1.1,h.1.2.1 104915,104916 1nkwF 146 6.90e+01 i.1.1.2 80591 1ejoH 220 6.91e+01 1igtB b.1.1.1,b.1.1.2 20429,21399 1pkfA 419 6.94e+01 a.104.1.1 94829 1ynfA 458 6.98e+01 1q5dA 419 7.01e+01 a.104.1.1 95891 1l7tH 221 7.16e+01 b.1.1.1,b.1.1.2 77799,77800 1uocA 289 7.22e+01 c.55.3.9 99686 1pcvA 205 7.38e+01 b.25.1.1 94493 2ap6A 112 7.46e+01 1yniA 458 7.59e+01 1iuhA 198 7.72e+01 d.61.1.2 83711 1flkA 228 7.74e+01 1d0aB b.8.1.1,h.1.2.1 23262,45469 2c2vS 78 7.81e+01 1jw9B 249 7.83e+01 c.111.1.1 67377 2cbiA 594 8.02e+01 2cqdA 116 8.11e+01 2fo7A 136 8.14e+01 1kamA 194 8.31e+01 c.26.1.3 72254 3crd 100 8.40e+01 3crd a.77.1.3 18429 1a17 166 8.65e+01 1a17 a.118.8.1 19206 1waqA 117 8.69e+01 2bm3A 166 8.70e+01 2bhkA 120 8.82e+01 1v8zA 388 8.97e+01 1wdwB 385 8.98e+01