# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjkA 98 3.41e-03 d.15.3.1 108631 1oqqA 106 5.56e-02 d.15.4.1 93422 1xlqA 106 6.54e-02 1qorA 327 9.66e-02 1qorA b.35.1.2,c.2.1.1 24766,29782 1rwsA 77 1.45e-01 d.15.3.2 97991 2aj2A 208 1.61e-01 1frrA 95 1.82e-01 1awd d.15.4.1 37674 1put 106 2.99e-01 1ayfA d.15.4.1 37680 2bb6A 414 4.00e-01 1fmaD 81 5.66e-01 1fmaD d.15.3.1 37643 1ryjA 70 6.85e-01 d.15.3.2 98104 1fm0D 81 8.49e-01 1fmaD d.15.3.1 37642 1e9mA 106 1.31e+00 1ayfA d.15.4.1 59397 1uwmA 106 1.31e+00 1frd 98 1.84e+00 1awd d.15.4.1 37648 2bpsA 81 2.08e+00 1awd 94 2.37e+00 1awd d.15.4.1 37673 1vybA 238 3.13e+00 d.151.1.1 108897 1offA 97 3.34e+00 d.15.4.1 86947 1yb5A 351 3.57e+00 1u3wA 374 3.62e+00 1a71A 374 4.33e+00 2ohxA b.35.1.2,c.2.1.1 24673,29689 8adh 374 4.34e+00 2ohxA b.35.1.2,c.2.1.1 24690,29706 1ib8A 164 4.44e+00 b.38.2.1,d.52.4.1 71168,71169 1a70 97 4.64e+00 1awd d.15.4.1 37678 1xc3A 302 4.82e+00 1zud2 66 5.04e+00 1n8kA 374 5.06e+00 b.35.1.2,c.2.1.1 80298,80299 1kf6B 243 5.09e+00 a.1.2.1,d.15.4.2 72397,72398 1hetA 374 5.11e+00 2ohxA b.35.1.2,c.2.1.1 60975,60976 1heuA 374 5.11e+00 2ohxA b.35.1.2,c.2.1.1 60979,60980 1a5r 103 5.22e+00 1a5r d.15.1.1 37597 2cfeA 162 5.47e+00 2ohxA 374 5.68e+00 2ohxA b.35.1.2,c.2.1.1 24669,29685 1wmzA 140 5.68e+00 d.169.1.1 109422 1axeA 374 5.71e+00 2ohxA b.35.1.2,c.2.1.1 24681,29697 1ee2A 373 5.78e+00 2ohxA b.35.1.2,c.2.1.1 24663,29679 1jq4A 98 6.07e+00 d.15.4.2 67083 1nw1A 429 6.24e+00 d.144.1.8 86286 2gupA 292 6.51e+00 1axgA 374 6.62e+00 2ohxA b.35.1.2,c.2.1.1 24691,29707 1d4vB 163 6.65e+00 1d4vB b.22.1.1 23884 1guaB 81 7.22e+00 1c1yB d.15.1.5 37619 1qt9A 98 8.29e+00 1awd d.15.4.1 37647 1rfkA 98 8.31e+00 1czpA 98 8.36e+00 1awd d.15.4.1 37645 1mh1 186 8.70e+00 1eesA c.37.1.8 32002 1l5pA 93 8.90e+00 d.15.4.1 73598 1t6aA 126 9.07e+00 d.129.8.1 106555 1c1yB 77 9.25e+00 1c1yB d.15.1.5 37618 1gaxA 862 9.32e+00 1gaxA b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1yqzA 438 9.36e+00 1b9rA 105 1.03e+01 1ayfA d.15.4.1 37683 2f4pA 147 1.04e+01 1doi 128 1.09e+01 1awd d.15.4.1 37676 2bwfA 77 1.09e+01 1ra6A 461 1.21e+01 e.8.1.4 104879 1agnA 373 1.22e+01 2ohxA b.35.1.2,c.2.1.1 24737,29753 1wgrA 100 1.25e+01 1f0zA 66 1.35e+01 1f0zA d.15.3.2 37644 2dafA 118 1.37e+01 1wwtA 88 1.37e+01 1wjnA 97 1.42e+01 1dg6A 191 1.64e+01 1d4vB b.22.1.1 23883 1o5oA 221 1.65e+01 c.61.1.1 92509 1p5tA 127 1.73e+01 b.55.1.2 94148 1lfdA 87 1.74e+01 1lfdA d.15.1.5 37622 1f1xA 322 1.76e+01 d.32.1.3,d.32.1.3 83208,83209 1ng2A 193 1.79e+01 b.34.2.1,b.34.2.1 85660,85661 2cu3A 64 1.88e+01 2rgf 97 1.88e+01 1lfdA d.15.1.5 37627 1jj2H 167 2.07e+01 1ffkF d.41.4.1 63093 1b1cA 181 2.07e+01 1amoA c.23.5.2 31212 1z06A 189 2.13e+01 1wkaA 147 2.16e+01 1rdr 461 2.26e+01 1rdr e.8.1.4 43116 1k07A 263 2.27e+01 d.157.1.1 77218 1i1b 153 2.36e+01 2i1b b.42.1.2 25537 1knmA 130 2.39e+01 b.42.2.1 72781 1knlA 130 2.42e+01 b.42.2.1 72780 2i1b 153 2.45e+01 2i1b b.42.1.2 25538 2g1lA 104 2.63e+01 2fcr 173 2.65e+01 1rcf c.23.5.1 31151 2ap1A 327 2.73e+01 1s0uA 408 2.79e+01 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 2atxA 194 2.82e+01 1i7hA 111 2.91e+01 d.15.4.1 71122 1zpuA 534 2.95e+01 1l2hA 153 3.01e+01 b.42.1.2 77655 1fxiA 96 3.02e+01 1awd d.15.4.1 37664 1rfa 79 3.04e+01 1c1yB d.15.1.5 37620 1f1uA 323 3.17e+01 d.32.1.3,d.32.1.3 83200,83201 1e0zA 128 3.17e+01 1awd d.15.4.1 59153 1xneA 113 3.21e+01 1r3eA 309 3.23e+01 b.122.1.1,d.265.1.2 96907,96908 1ws8A 109 3.43e+01 1i2oA 316 3.52e+01 1onrA c.1.10.1 61574 1hmvA 560 3.58e+01 1rthA c.55.3.1,e.8.1.2 33587,43046 1eb7A 323 3.59e+01 1eb7A a.3.1.5,a.3.1.5 59404,59405 1zvtA 256 3.63e+01 1fvrA 327 3.66e+01 d.144.1.7 60047 1jmoA 480 3.71e+01 e.1.1.1 77138 1mgpA 313 3.78e+01 c.119.1.1 79098 1euvB 86 3.82e+01 1a5r d.15.1.1 37598 2c5lC 117 3.83e+01 1aw0 72 3.86e+01 1aw0 d.58.17.1 39342 2c2hA 192 3.98e+01 1prs 173 4.10e+01 1prs b.11.1.1,b.11.1.1 23625,23626 1l7yA 94 4.21e+01 d.15.1.6 73676 21bi 153 4.29e+01 2i1b b.42.1.2 25542 1joa 447 4.31e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30563,30564,40203 2a4hA 126 4.31e+01 2b5wA 357 4.36e+01 1m93B 245 4.46e+01 1cf2O 337 4.50e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1dmhA 311 4.60e+01 1dmhA b.3.6.1 22633 1nhs 447 4.61e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1ghhA 81 4.75e+01 1ghhA d.57.1.1 38940 1prr 173 4.77e+01 1prs b.11.1.1,b.11.1.1 23623,23624 1nhp 447 4.88e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1ixmB 192 4.88e+01 1ixmA d.123.1.1 41115 1pl8A 356 4.94e+01 b.35.1.2,c.2.1.1 94878,94879 1ixmA 192 4.99e+01 1ixmA d.123.1.1 41114 1w66A 232 5.00e+01 1zy4A 303 5.04e+01 1onrA 316 5.06e+01 1onrA c.1.10.1 29169 1uh6A 100 5.12e+01 d.15.1.1 99394 1nf3A 195 5.14e+01 c.37.1.8 85594 1iyjB 817 5.35e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 2fcfA 103 5.40e+01 31bi 153 5.42e+01 2i1b b.42.1.2 25541 1t0qC 86 5.43e+01 d.15.12.1 106222 1f0cA 305 5.45e+01 1c8oA e.1.1.1 42676 1kmqA 184 5.81e+01 c.37.1.8 84412 1jb3A 131 6.00e+01 1jc7A b.40.3.2 62833 1jc7A 131 6.03e+01 1jc7A b.40.3.2 62873 1aqzA 149 6.07e+01 1aqzA d.1.1.3 36238 2cyjA 118 6.08e+01 1vf7A 369 6.11e+01 f.46.1.1 108557 1x0rA 249 6.13e+01 2pia 321 6.24e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2al3A 90 6.34e+01 1cxyA 90 6.35e+01 1cyo d.120.1.1 41085 1ykfA 352 6.39e+01 1pedA b.35.1.2,c.2.1.1 24757,29773 1se9A 126 6.43e+01 d.15.1.1 98821 1f82A 424 6.54e+01 1f82A d.92.1.7 40307 1aqzB 149 6.58e+01 1aqzA d.1.1.3 36239 1raxA 115 6.59e+01 1lfdA d.15.1.5 37626 1msk 331 6.62e+01 1msk d.173.1.1 42495 1b9mA 265 6.79e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1o9lA 481 6.79e+01 c.124.1.2,c.124.1.3 81241,81242 1d2eA 397 6.85e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1xuvA 178 6.95e+01 1qysA 106 7.02e+01 k.41.1.1 96603 1ddsA 159 7.06e+01 1vdrA c.71.1.1 34858 3pmgA 561 7.08e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1vcbA 118 7.14e+01 1vcbA d.15.1.1 37603 2btzA 394 7.15e+01 2ghpA 292 7.30e+01 1lm8B 118 7.30e+01 d.15.1.1 74033 1d9tA 289 7.42e+01 1deaA 1wi0A 113 7.44e+01 2ex2A 458 7.58e+01 2h6dA 276 7.62e+01 1k47A 337 7.68e+01 d.14.1.5,d.58.26.4 72040,72041 2act 220 7.70e+01 1cs8A d.3.1.1 37002 1atiB 505 7.78e+01 1atiA c.51.1.1,d.104.1.1 33197,40746 1ne7A 289 7.82e+01 c.124.1.1 91833 1gehA 444 8.12e+01 c.1.14.1,d.58.9.1 65181,65182 1yqbA 100 8.22e+01 2cr5A 109 8.23e+01 2f69A 261 8.25e+01 1d2qA 173 8.33e+01 1d4vB b.22.1.1 23894 1atiA 505 8.36e+01 1atiA c.51.1.1,d.104.1.1 33196,40745 1lxdA 100 8.38e+01 1lfdA d.15.1.5 37624 1zbsA 291 8.41e+01 2b10B 108 8.62e+01 1x8bA 289 8.65e+01 1vbiA 344 8.66e+01 1wloA 136 8.75e+01 2b11B 108 8.81e+01 1ycc 108 8.87e+01 1ycc a.3.1.1 15834 1irw 108 8.89e+01 1ycc a.3.1.1 15855 1zq7A 207 8.89e+01 1jenA 267 8.93e+01 1jenA 1k7yA 577 8.95e+01 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1h9sA 140 8.95e+01 1b9mA b.40.6.2,b.40.6.2 60843,60844 1m2oA 768 8.99e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484