# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjkA 98 1.24e-04 d.15.3.1 108631 1oqqA 106 1.60e-02 d.15.4.1 93422 1frrA 95 2.17e-02 1awd d.15.4.1 37674 1xlqA 106 3.31e-02 1jl0A 334 1.33e-01 1jenA d.156.1.1 63155 1uwmA 106 1.44e-01 1fm0D 81 1.53e-01 1fmaD d.15.3.1 37642 1zud2 66 2.47e-01 2bpsA 81 4.94e-01 2fcr 173 6.96e-01 1rcf c.23.5.1 31151 1doi 128 1.33e+00 1awd d.15.4.1 37676 2fcfA 103 1.38e+00 1wgrA 100 1.41e+00 1awd 94 1.53e+00 1awd d.15.4.1 37673 2bb6A 414 1.56e+00 1k07A 263 1.61e+00 d.157.1.1 77218 1f1uA 323 1.62e+00 d.32.1.3,d.32.1.3 83200,83201 2cu3A 64 1.80e+00 1f1xA 322 1.84e+00 d.32.1.3,d.32.1.3 83208,83209 2bkdN 134 1.95e+00 2bwfA 77 2.01e+00 1ivzA 132 2.22e+00 d.58.41.1 76863 1r5lA 262 2.34e+00 a.5.3.1,c.13.1.1 97099,97100 1l5pA 93 2.36e+00 d.15.4.1 73598 1i0rA 169 2.95e+00 1i0rA b.45.1.2 61489 2f4pA 147 3.05e+00 1p99A 295 3.18e+00 c.94.1.1 94384 2h2bA 107 3.33e+00 1i7hA 111 3.35e+00 d.15.4.1 71122 1ad2 228 3.64e+00 1ad2 e.24.1.1 43353 1kwiA 101 3.75e+00 d.17.1.3 77564 1rfkA 98 4.42e+00 1h9mA 145 4.47e+00 1h9jA b.40.6.2,b.40.6.2 60833,60834 2fexA 188 4.60e+00 2g1lA 104 4.85e+00 1frd 98 5.18e+00 1awd d.15.4.1 37648 1offA 97 5.45e+00 d.15.4.1 86947 1hj9A 226 5.81e+00 b.47.1.2 65845 1xe1A 116 6.07e+00 b.43.3.1 109571 1xt8A 292 6.41e+00 1k94A 165 6.76e+00 a.39.1.8 68333 1r8eA 278 6.99e+00 a.6.1.3,d.60.1.1 104843,104844 1ok0A 74 7.01e+00 b.5.1.1 93191 1c1yB 77 7.07e+00 1c1yB d.15.1.5 37618 1jb3A 131 7.62e+00 1jc7A b.40.3.2 62833 1wwkA 307 7.67e+00 1euwA 152 8.23e+00 1dupA b.85.4.1 28349 1gpr 162 8.44e+00 1gpr b.84.3.1 28267 1f06A 320 8.95e+00 1dapA c.2.1.3,d.81.1.3 59556,59557 1ekeA 230 8.96e+00 1ekeA c.55.3.1 33572 1o57A 291 9.62e+00 a.4.5.40,c.61.1.1 92483,92484 2fgtA 417 9.73e+00 1zkcA 197 9.77e+00 1h0pA 182 9.89e+00 b.62.1.1 76450 1uasA 362 1.02e+01 b.71.1.1,c.1.8.1 88388,88389 1ihjA 98 1.06e+01 1pdr b.36.1.1 62382 1o54A 277 1.06e+01 c.66.1.13 92482 1ktbA 405 1.07e+01 b.71.1.1,c.1.8.1 72960,72961 1wmmA 145 1.08e+01 1zh2A 121 1.19e+01 1hf2A 210 1.25e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1agjA 242 1.41e+01 1agjA b.47.1.1 25827 2c5lC 117 1.41e+01 1ogwA 76 1.55e+01 d.15.1.1 87001 1yloA 348 1.58e+01 1ra6A 461 1.61e+01 e.8.1.4 104879 2rmcA 182 1.62e+01 2cpl b.62.1.1 27491 1l4uA 176 1.71e+01 c.37.1.2 73568 1l7yA 94 1.76e+01 d.15.1.6 73676 1vybA 238 1.78e+01 d.151.1.1 108897 1onrA 316 1.84e+01 1onrA c.1.10.1 29169 1yb0A 159 1.87e+01 1y0bA 197 1.90e+01 1w9hA 427 2.09e+01 1a70 97 2.12e+01 1awd d.15.4.1 37678 1ejbA 168 2.13e+01 1rvv1 c.16.1.1 59417 1oboA 169 2.22e+01 c.23.5.1 86776 1ag9A 175 2.25e+01 1rcf c.23.5.1 31178 1wkaA 147 2.27e+01 2aj6A 159 2.27e+01 1wgkA 114 2.28e+01 1feuA 206 2.30e+01 1feuA b.53.1.1 59801 2furA 209 2.31e+01 1w6sB 74 2.34e+01 1im5A 180 2.37e+01 c.33.1.3 66211 2fytA 340 2.44e+01 1yj1A 76 2.51e+01 2fomB 185 2.52e+01 1dg6A 191 2.56e+01 1d4vB b.22.1.1 23883 1w78A 422 2.57e+01 1vc3B 97 2.66e+01 1meqA 23 2.66e+01 j.53.1.1 79036 1ojqA 212 2.76e+01 d.166.1.1 93146 1hrnA 337 2.79e+01 1smrA b.50.1.2 26869 2dafA 118 2.81e+01 1zndA 174 2.82e+01 1zupA 315 2.85e+01 1t6eX 381 2.86e+01 b.50.1.2 106564 2gcuA 245 2.96e+01 1aie 31 3.05e+01 1aie a.53.1.1 17829 1hynP 379 3.05e+01 1hynP d.112.1.2 61408 1czpA 98 3.13e+01 1awd d.15.4.1 37645 1n00A 321 3.24e+01 a.65.1.1 85241 1y51A 88 3.34e+01 2al3A 90 3.51e+01 1h8eA 510 3.54e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1yopA 83 3.64e+01 2f5xA 312 3.66e+01 1ip9A 85 3.79e+01 1ip9A d.15.2.2 62638 2hc1A 291 3.83e+01 1seiA 130 3.84e+01 1seiA d.140.1.1 41463 1rk6A 496 4.00e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1q5hA 147 4.03e+01 b.85.4.1 95893 2aiqA 231 4.06e+01 1vl5A 260 4.09e+01 c.66.1.41 108720 1pufA 77 4.13e+01 a.4.1.1 95131 1sj1A 66 4.19e+01 d.58.1.4 105595 2d2eA 250 4.24e+01 1qy1A 174 4.29e+01 b.60.1.1 96568 2as0A 396 4.35e+01 1qahA 136 4.46e+01 d.79.1.1 96338 1mfgA 95 4.46e+01 b.36.1.1 79043 1omrA 201 4.46e+01 a.39.1.5 93349 1euvB 86 4.53e+01 1a5r d.15.1.1 37598 1zvtA 256 4.56e+01 1l2hA 153 4.59e+01 b.42.1.2 77655 1nf9A 207 4.61e+01 c.33.1.3 85631 2fp7B 172 4.62e+01 1zu4A 320 4.63e+01 2fm8A 135 4.69e+01 1xc3A 302 4.76e+01 1akhA 61 4.79e+01 1akhA a.4.1.1 15980 1cxyA 90 4.83e+01 1cyo d.120.1.1 41085 1mkiA 330 4.90e+01 e.3.1.2 84994 1ve2A 235 5.00e+01 1kmvA 186 5.02e+01 c.71.1.1 72757 1l2tA 235 5.05e+01 c.37.1.12 73514 1a0jA 223 5.06e+01 5ptp b.47.1.2 26002 1dl5A 317 5.06e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1k47A 337 5.12e+01 d.14.1.5,d.58.26.4 72040,72041 1g8pA 350 5.28e+01 1g8pA c.37.1.20 60376 1xizA 159 5.29e+01 1knmA 130 5.32e+01 b.42.2.1 72781 1ss4A 153 5.32e+01 d.32.1.6 105976 2ck3A 510 5.36e+01 1rypC 244 5.46e+01 1rypC d.153.1.4 41934 1wwtA 88 5.52e+01 2h3lA 103 5.60e+01 1pl8A 356 5.75e+01 b.35.1.2,c.2.1.1 94878,94879 2fb6A 117 5.81e+01 1uj8A 77 5.82e+01 1kqfB 294 5.83e+01 d.58.1.5,f.23.22.1 75900,75901 3il8 72 5.85e+01 1tvxA d.9.1.1 37356 1m15A 357 5.89e+01 a.83.1.1,d.128.1.2 78368,78369 2d42A 249 5.96e+01 1mjhA 162 6.06e+01 1mjhA c.26.2.4 31639 1lfdA 87 6.09e+01 1lfdA d.15.1.5 37622 1sqhA 312 6.12e+01 d.108.1.5 98966 1bio 228 6.18e+01 5ptp b.47.1.2 26314 2freA 200 6.20e+01 1msk 331 6.20e+01 1msk d.173.1.1 42495 1xgsA 295 6.21e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1f60A 458 6.28e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1y93A 159 6.31e+01 1gsmA 210 6.36e+01 b.1.1.4,b.1.1.4 65535,65536 1m2tA 254 6.37e+01 d.165.1.1 84761 1hj8A 222 6.48e+01 b.47.1.2 65844 1xneA 113 6.49e+01 1wteA 272 6.56e+01 1r89A 437 6.69e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1s50A 259 6.85e+01 1tmxA 293 6.94e+01 1wruA 379 6.96e+01 1zk8A 183 7.09e+01 1b0uA 262 7.20e+01 1b0uA c.37.1.12 32370 1yqbA 100 7.24e+01 1qmvA 197 7.25e+01 1qq2A c.47.1.10 33066 1okiA 210 7.27e+01 b.11.1.1,b.11.1.1 93255,93256 2ap1A 327 7.30e+01 2glfA 450 7.37e+01 2fzsA 193 7.41e+01 1qz9A 416 7.43e+01 c.67.1.3 96621 2iu4A 336 7.43e+01 1ys5A 164 7.46e+01 1wb4A 297 7.48e+01 1z5zA 271 7.50e+01 1gpjA 404 7.66e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1gcqC 70 7.70e+01 1gcpA b.34.2.1 60436 1wluA 136 7.72e+01 1xer 103 7.73e+01 1xer d.58.1.3 38990 1cnzA 363 7.73e+01 1cnzA c.77.1.1 35061 1fxlA 167 7.77e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1r17A 343 7.78e+01 b.2.3.4,b.2.3.4 96796,96797 1cznA 169 7.78e+01 1rcf c.23.5.1 31181 1vecA 206 7.83e+01 c.37.1.19 100575 1a41 234 7.91e+01 1a41 d.163.1.2 42174 2bwvA 440 8.13e+01 1h12A 405 8.19e+01 a.102.1.2 83447 2f49C 30 8.31e+01 1dljA 402 8.32e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1yg6A 193 8.40e+01 2bopA 85 8.44e+01 2bopA d.58.8.1 39217 8dfr 189 8.59e+01 1aoeA c.71.1.1 34895 1wywA 230 8.67e+01 1iyjB 817 8.74e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1wmzA 140 8.76e+01 d.169.1.1 109422 1g5bA 221 8.79e+01 1g5bA d.159.1.3 60261 1mz4A 137 8.82e+01 a.3.1.1 91496 1oi2A 366 8.84e+01 c.119.1.2 103802 2avuE 192 8.85e+01 1rz2A 254 8.98e+01 b.100.1.1 105130