# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjkA 98 1.84e-05 d.15.3.1 108631 1xlqA 106 4.06e-04 1oqqA 106 4.21e-04 d.15.4.1 93422 1frrA 95 4.76e-03 1awd d.15.4.1 37674 1uwmA 106 1.15e-02 2bb6A 414 1.30e-02 1zud2 66 2.48e-02 2bwfA 77 3.75e-02 2bpsA 81 4.36e-02 1yb5A 351 4.81e-02 1fm0D 81 6.66e-02 1fmaD d.15.3.1 37642 1dmhA 311 8.15e-02 1dmhA b.3.6.1 22633 2cu3A 64 1.07e-01 1lfdA 87 1.30e-01 1lfdA d.15.1.5 37622 1frd 98 1.86e-01 1awd d.15.4.1 37648 1awd 94 1.94e-01 1awd d.15.4.1 37673 1c1yB 77 2.54e-01 1c1yB d.15.1.5 37618 1ryaA 160 4.21e-01 d.113.1.5 105122 1ib8A 164 4.40e-01 b.38.2.1,d.52.4.1 71168,71169 1yj1A 76 4.43e-01 1r3eA 309 5.08e-01 b.122.1.1,d.265.1.2 96907,96908 1offA 97 6.20e-01 d.15.4.1 86947 1wgrA 100 6.55e-01 1i7hA 111 7.36e-01 d.15.4.1 71122 1lm8B 118 8.02e-01 d.15.1.1 74033 1a70 97 8.04e-01 1awd d.15.4.1 37678 1czpA 98 8.17e-01 1awd d.15.4.1 37645 1ogwA 76 8.40e-01 d.15.1.1 87001 1l5pA 93 8.58e-01 d.15.4.1 73598 2al3A 90 9.48e-01 2fnjB 118 9.86e-01 1doi 128 1.03e+00 1awd d.15.4.1 37676 1ra6A 461 1.05e+00 e.8.1.4 104879 1rfkA 98 1.05e+00 1dg6A 191 1.23e+00 1d4vB b.22.1.1 23883 2c5lC 117 1.23e+00 2bt6A 108 1.25e+00 1yqbA 100 1.64e+00 1u3wA 374 1.66e+00 1t6aA 126 1.69e+00 d.129.8.1 106555 1k07A 263 1.73e+00 d.157.1.1 77218 2fcfA 103 1.80e+00 1wwtA 88 1.99e+00 1zu0A 529 2.30e+00 1t0qC 86 2.50e+00 d.15.12.1 106222 1ws8A 109 2.60e+00 2a4hA 126 2.61e+00 1pvmA 184 2.69e+00 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1l2hA 153 2.87e+00 b.42.1.2 77655 2fcr 173 2.89e+00 1rcf c.23.5.1 31151 2apoA 357 3.11e+00 1f1xA 322 3.17e+00 d.32.1.3,d.32.1.3 83208,83209 1vybA 238 3.25e+00 d.151.1.1 108897 1n8kA 374 3.26e+00 b.35.1.2,c.2.1.1 80298,80299 1euvB 86 3.32e+00 1a5r d.15.1.1 37598 1l7yA 94 3.35e+00 d.15.1.6 73676 1p99A 295 3.58e+00 c.94.1.1 94384 1tmxA 293 3.70e+00 1ooyA 481 4.30e+00 c.124.1.3,c.124.1.2 93388,93389 1siqA 392 4.55e+00 a.29.3.1,e.6.1.1 105585,105586 2b5wA 357 4.66e+00 1f1uA 323 4.75e+00 d.32.1.3,d.32.1.3 83200,83201 1k8wA 327 5.11e+00 b.122.1.1,d.265.1.2 83094,90388 1knmA 130 5.16e+00 b.42.2.1 72781 1k7hA 476 5.95e+00 c.76.1.1 72101 2azwA 148 5.95e+00 2g1lA 104 6.16e+00 2fazA 78 6.36e+00 1mh1 186 6.59e+00 1eesA c.37.1.8 32002 2pia 321 6.76e+00 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1z06A 189 6.87e+00 2c1vA 338 6.98e+00 1xc3A 302 7.05e+00 1so9A 164 8.28e+00 b.146.1.1 105842 1omzA 293 8.30e+00 c.68.1.15 87093 2fm8A 135 8.38e+00 1wm3A 72 8.77e+00 1z2mA 155 8.81e+00 1pt6A 213 8.81e+00 c.62.1.1 95091 1cnzA 363 9.09e+00 1cnzA c.77.1.1 35061 1xi1A 575 9.24e+00 1jl0A 334 9.31e+00 1jenA d.156.1.1 63155 1snzA 344 9.32e+00 b.30.5.4 98930 1x8bA 289 9.43e+00 1pl8A 356 9.56e+00 b.35.1.2,c.2.1.1 94878,94879 2b0vA 153 9.62e+00 1p0fA 373 9.67e+00 b.35.1.2,c.2.1.1 87642,87643 1ku0A 388 9.83e+00 c.69.1.18 72994 1t3qA 168 1.08e+01 a.56.1.1,d.15.4.2 106367,106368 2gaxA 135 1.10e+01 2f69A 261 1.14e+01 1yqzA 438 1.15e+01 1nytA 271 1.17e+01 c.2.1.7,c.58.1.5 86417,86418 2h3lA 103 1.19e+01 1ihjA 98 1.23e+01 1pdr b.36.1.1 62382 1q8rA 120 1.27e+01 d.79.6.1 96225 1uuqA 440 1.29e+01 c.1.8.3 100015 1y0bA 197 1.30e+01 2f4pA 147 1.30e+01 1zx8A 136 1.32e+01 1iyjB 817 1.33e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1twuA 139 1.36e+01 d.32.1.8 107413 1b9mA 265 1.36e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1h0hA 977 1.39e+01 b.52.2.2,c.81.1.1 76435,76436 1tjxA 159 1.41e+01 2fug1 438 1.43e+01 1w3iA 293 1.45e+01 c.1.10.1 109152 1bbhA 131 1.48e+01 1bbhA a.24.3.2 16546 1woqA 267 1.49e+01 c.55.1.10,c.55.1.10 109462,109463 1agjA 242 1.53e+01 1agjA b.47.1.1 25827 1r5lA 262 1.54e+01 a.5.3.1,c.13.1.1 97099,97100 1vc3B 97 1.57e+01 2fqmA 75 1.61e+01 1z6bA 154 1.67e+01 1f06A 320 1.69e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1q1oA 98 1.72e+01 d.15.2.2 95596 2fsqA 243 1.78e+01 1p4oA 322 1.79e+01 d.144.1.7 87775 1iueA 98 1.82e+01 d.15.4.1 90697 1zy4A 303 1.84e+01 2bolA 314 1.89e+01 1yqgA 263 1.90e+01 1n6aA 259 1.92e+01 b.76.2.1,b.85.7.1 80121,80122 1whvA 100 1.92e+01 1v5mA 136 1.94e+01 b.55.1.1 108379 2cfeA 162 1.95e+01 2btzA 394 1.97e+01 2gptA 523 2.02e+01 1nw1A 429 2.03e+01 d.144.1.8 86286 1s9jA 341 2.06e+01 2gupA 292 2.08e+01 1mfgA 95 2.09e+01 b.36.1.1 79043 1xe1A 116 2.15e+01 b.43.3.1 109571 1sacA 204 2.17e+01 1sacA b.29.1.5 24237 1wb4A 297 2.19e+01 2c27A 315 2.20e+01 1vr6A 350 2.22e+01 1pcxA 810 2.26e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1sfe 180 2.36e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1vioA 243 2.50e+01 d.265.1.3,d.66.1.5 100762,100763 1tygB 87 2.53e+01 d.15.3.2 107455 2fp4B 395 2.54e+01 1vr9A 213 2.55e+01 1zvtA 256 2.57e+01 1wruA 379 2.59e+01 1ty0A 211 2.60e+01 b.40.2.2,d.15.6.1 107440,107441 1n62A 166 2.61e+01 a.56.1.1,d.15.4.2 80090,80091 1ypyA 184 2.64e+01 1bf6A 291 2.64e+01 1pscA c.1.9.3 29065 1g5cA 170 2.64e+01 1g5cA c.53.2.1 60264 1k0eA 453 2.68e+01 d.161.1.1 67938 1dljA 402 2.71e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1t71A 281 2.74e+01 1aqzA 149 2.76e+01 1aqzA d.1.1.3 36238 1kqfC 217 2.80e+01 f.21.1.1 72874 2ghpA 292 2.81e+01 1u94A 356 2.81e+01 c.37.1.11,d.48.1.1 107743,107744 1ad2 228 2.82e+01 1ad2 e.24.1.1 43353 1j3mA 129 2.82e+01 d.129.7.1 103836 1jb3A 131 2.86e+01 1jc7A b.40.3.2 62833 1wriA 93 2.87e+01 1inlA 296 2.87e+01 c.66.1.17 66220 1rm6C 161 2.87e+01 3pcgA 200 2.87e+01 3pchA b.3.6.1 22647 1avbA 226 2.89e+01 1led b.29.1.1 24158 1msk 331 2.96e+01 1msk d.173.1.1 42495 1ey4A 149 3.01e+01 1snc b.40.1.1 24815 2h2bA 107 3.01e+01 1uxy 340 3.01e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1krhA 338 3.01e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1x8qA 184 3.07e+01 2bh1A 250 3.09e+01 1owfB 94 3.10e+01 a.55.1.1 87488 1uqtA 482 3.11e+01 c.87.1.6 99794 1oruA 195 3.14e+01 b.58.1.2 93464 1cxyA 90 3.15e+01 1cyo d.120.1.1 41085 2c8mA 262 3.24e+01 1i2aA 219 3.24e+01 e.24.1.1 90660 1yopA 83 3.31e+01 1q4rA 112 3.34e+01 d.58.4.4 95823 1ktgA 138 3.35e+01 d.113.1.1 72972 1eokA 290 3.38e+01 1eokA c.1.8.5 28991 1rkuA 206 3.40e+01 c.108.1.11 97627 1k94A 165 3.42e+01 a.39.1.8 68333 2fr1A 486 3.44e+01 2b7aA 293 3.44e+01 1goiA 499 3.47e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1meoA 209 3.50e+01 c.65.1.1 79035 1kk1A 410 3.53e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1wmzA 140 3.55e+01 d.169.1.1 109422 1ng2A 193 3.62e+01 b.34.2.1,b.34.2.1 85660,85661 2act 220 3.63e+01 1cs8A d.3.1.1 37002 1yqtA 538 3.69e+01 1j7gA 144 3.74e+01 c.110.1.1 84130 1t9fA 187 3.74e+01 b.42.6.1 106710 2bmaA 470 3.78e+01 1zavA 180 3.83e+01 1udkA 51 3.83e+01 g.3.14.1 99211 1w5fA 353 3.88e+01 1i0rA 169 3.88e+01 1i0rA b.45.1.2 61489 1o50A 157 3.95e+01 d.37.1.1,d.37.1.1 92478,92479 1svvA 359 3.97e+01 c.67.1.1 106054 1mr3F 181 4.13e+01 c.37.1.8 79422 1p0hA 318 4.18e+01 d.108.1.1 93866 1qmyA 167 4.24e+01 1qmyA d.3.1.2 37094 1jer 138 4.25e+01 2cbp b.6.1.1 23022 1g0sA 209 4.26e+01 1g0sA d.113.1.1 60187 1oc2A 348 4.27e+01 c.2.1.2 92765 1fiqB 350 4.28e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 2fd4A 122 4.31e+01 1gvp 87 4.31e+01 1gvp b.40.4.7 25369 1dxy 333 4.31e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 2as0A 396 4.33e+01 1jx4A 352 4.35e+01 d.240.1.1,e.8.1.7 90378,90379 1sc3A 178 4.44e+01 c.17.1.1 105416 1hc7A 477 4.45e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1ghhA 81 4.53e+01 1ghhA d.57.1.1 38940 2fn4A 181 4.58e+01 2asuB 234 4.59e+01 1o54A 277 4.65e+01 c.66.1.13 92482 2fyxA 143 4.65e+01 1rq2A 382 4.67e+01 c.32.1.1,d.79.2.1 105048,105049 1yarA 233 4.82e+01 2cr5A 109 4.84e+01 1r31A 428 4.85e+01 d.58.20.1,d.179.1.1 96897,96898 2cyjA 118 4.85e+01 2ervA 150 4.87e+01 2cwzA 141 4.87e+01 2d7nA 93 4.91e+01 1xgsA 295 4.91e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1nddA 76 4.91e+01 1ubi d.15.1.1 37599 1xqwA 293 5.00e+01 1zn8A 180 5.02e+01 2h0eA 121 5.18e+01 1el6A 219 5.21e+01 1el6B d.182.1.1 42606 1tksA 204 5.25e+01 d.115.1.2 107114 2ex2A 458 5.28e+01 1zldA 120 5.35e+01 2amdA 311 5.36e+01 1jnyA 435 5.39e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1prxA 224 5.44e+01 1prxA c.47.1.10 33076 1wkaA 147 5.45e+01 1k47A 337 5.50e+01 d.14.1.5,d.58.26.4 72040,72041 1n2eA 300 5.50e+01 c.26.1.4 85268 1gskA 513 5.55e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 3prn 289 5.57e+01 3prn f.4.3.1 43761 1dqaA 467 5.71e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1eejA 216 5.77e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 2sns 149 5.87e+01 1snc b.40.1.1 24860 1xuvA 178 5.91e+01 1wzlA 585 5.93e+01 1ra9 159 5.93e+01 1vdrA c.71.1.1 34820 2aefA 234 5.94e+01 1cznA 169 6.05e+01 1rcf c.23.5.1 31181 1m93B 245 6.12e+01 1yksA 440 6.23e+01 2gk3A 256 6.24e+01 1uptA 171 6.25e+01 c.37.1.8 99767 1wjuA 100 6.35e+01 1gpr 162 6.38e+01 1gpr b.84.3.1 28267 1z9zA 60 6.44e+01 1txnA 328 6.45e+01 1yhvA 297 6.46e+01 1xxaA 78 6.47e+01 1xxaA d.74.2.1 39700 2bwvA 440 6.48e+01 1qfxA 460 6.52e+01 1qfxA c.60.1.2 33994 1rktA 205 6.57e+01 a.4.1.9,a.121.1.1 97623,97624 1sv6A 269 6.63e+01 d.177.1.1 106043 1zejA 293 6.64e+01 1yfbA 59 6.65e+01 1wy2A 351 6.68e+01 3grs 478 6.70e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1k8kC 372 6.70e+01 b.69.4.1 68308 1mtzA 293 6.77e+01 c.69.1.7 79467 1ftrA 296 6.81e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1v74A 107 6.82e+01 d.243.1.1 100442 1vj0A 380 6.87e+01 b.35.1.2,c.2.1.1 100786,100787 1xmbA 418 6.90e+01 1mugA 168 6.95e+01 1mugA c.18.1.2 31030 1p8xA 344 6.97e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 4dfrA 159 7.02e+01 1vdrA c.71.1.1 34822 2fh1A 344 7.02e+01 1h8mA 140 7.06e+01 1h8mA d.110.4.1 60782 1wteA 272 7.06e+01 2blnA 305 7.07e+01 1v8cA 168 7.08e+01 d.15.3.1,d.129.5.1 100495,100496 1v4aA 440 7.10e+01 a.24.16.4,d.218.1.9 108350,108351 1lurA 339 7.12e+01 b.30.5.4 84717 2sak 121 7.16e+01 2sak d.15.5.1 37711 1npsA 88 7.16e+01 1prs b.11.1.1 23622 1reqB 637 7.16e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1q6zA 528 7.18e+01 1wloA 136 7.18e+01 1reqA 727 7.23e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1yp5A 58 7.29e+01 2fz0A 149 7.38e+01 1uhgA 385 7.48e+01 e.1.1.1 88491 2azeB 106 7.51e+01 1fjgE 162 7.53e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1f8vA 355 7.55e+01 2bbvA b.121.4.4 23329 1aop 497 7.57e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1iwdA 215 7.58e+01 d.3.1.1 83756 4tsvA 150 7.62e+01 2tnfA b.22.1.1 23860 1q2lA 939 7.70e+01 2avxA 171 7.72e+01 1vlaA 150 7.72e+01 d.227.1.2 108735 1lbvA 252 7.73e+01 e.7.1.1 73813 2bh8A 101 7.75e+01 1h9mA 145 7.75e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 1yg6A 193 7.82e+01 1yloA 348 7.83e+01 1oi2A 366 7.87e+01 c.119.1.2 103802 1j3wA 163 7.92e+01 d.110.7.1 90833 1j3bA 529 7.92e+01 c.91.1.1,c.109.1.1 77071,77072 2bwnA 401 7.96e+01 1qb2A 109 7.99e+01 1qb2A a.36.1.1 17125 1vlbA 907 8.06e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2axcA 264 8.07e+01 1vk6A 269 8.11e+01 d.113.1.4,d.113.1.4 100851,100852 1pg4A 652 8.13e+01 e.23.1.1 88067 2fzsA 193 8.14e+01 2be1A 339 8.20e+01 1ootA 60 8.21e+01 b.34.2.1 93386 1by2 119 8.21e+01 1by2 d.170.1.1 42452 1aohA 147 8.21e+01 1aohA b.2.2.2 22401 1m1hA 248 8.21e+01 b.114.1.1,d.58.42.1 78415,78416 1jkeA 145 8.26e+01 c.110.1.1 66791 1y1nA 291 8.29e+01 1yf3A 259 8.29e+01 2fneA 117 8.31e+01 1tjyA 316 8.38e+01 c.93.1.1 107062 1q5hA 147 8.41e+01 b.85.4.1 95893 2h6dA 276 8.56e+01 1xccA 220 8.58e+01 1ui5A 215 8.67e+01 a.4.1.9,a.121.1.1 107856,107857 1tt7A 330 8.77e+01 2tgi 112 8.90e+01 2tgi g.17.1.2 44777 1vjyA 303 8.91e+01 d.144.1.7 108633 2bw0A 329 8.93e+01 2bmfA 451 8.94e+01 1vqoT 120 8.96e+01 2g8lA 299 8.97e+01 2a38A 194 8.97e+01 1szwA 379 8.97e+01 d.265.1.4 99047 1u09A 476 8.99e+01 e.8.1.4 107545