# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjkA 98 1.70e-03 d.15.3.1 108631 1rwsA 77 7.95e-03 d.15.3.2 97991 1oqqA 106 1.18e-01 d.15.4.1 93422 1frrA 95 1.55e-01 1awd d.15.4.1 37674 1xlqA 106 2.17e-01 1jenA 267 4.62e-01 1jenA 1b9rA 105 5.79e-01 1ayfA d.15.4.1 37683 1jl0A 334 6.82e-01 1jenA d.156.1.1 63155 1e9mA 106 7.15e-01 1ayfA d.15.4.1 59397 1uwmA 106 7.17e-01 1fm0D 81 7.88e-01 1fmaD d.15.3.1 37642 1zud2 66 1.27e+00 1ryjA 70 1.38e+00 d.15.3.2 98104 2bpsA 81 2.03e+00 2fcr 173 2.05e+00 1rcf c.23.5.1 31151 1f1xA 322 3.30e+00 d.32.1.3,d.32.1.3 83208,83209 1f1uA 323 3.43e+00 d.32.1.3,d.32.1.3 83200,83201 1doi 128 4.08e+00 1awd d.15.4.1 37676 2bb6A 414 4.41e+00 1wgrA 100 4.66e+00 1k07A 263 5.09e+00 d.157.1.1 77218 1ivzA 132 5.17e+00 d.58.41.1 76863 2fcfA 103 5.30e+00 2cu3A 64 5.77e+00 1r5lA 262 6.09e+00 a.5.3.1,c.13.1.1 97099,97100 2bkdN 134 6.32e+00 2bwfA 77 6.46e+00 1awd 94 7.13e+00 1awd d.15.4.1 37673 2fexA 188 7.40e+00 1i0rA 169 7.71e+00 1i0rA b.45.1.2 61489 1l5pA 93 8.39e+00 d.15.4.1 73598 1k94A 165 8.66e+00 a.39.1.8 68333 1i0sA 169 8.80e+00 1i0rA b.45.1.2 61491 1pvc3 238 9.26e+00 1aym3 2f4pA 147 9.59e+00 1p99A 295 9.76e+00 c.94.1.1 94384 1zpuA 534 9.77e+00 1ad2 228 9.90e+00 1ad2 e.24.1.1 43353 1hoe 74 1.01e+01 1hoe b.5.1.1 22833 2h2bA 107 1.02e+01 1i7hA 111 1.08e+01 d.15.4.1 71122 1h9mA 145 1.15e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 1wwkA 307 1.16e+01 1itg 166 1.25e+01 1b9dA c.55.3.2 33661 1kwiA 101 1.27e+01 d.17.1.3 77564 1rfkA 98 1.31e+01 1xt8A 292 1.33e+01 1c1yB 77 1.34e+01 1c1yB d.15.1.5 37618 1uasA 362 1.44e+01 b.71.1.1,c.1.8.1 88388,88389 1hj9A 226 1.47e+01 b.47.1.2 65845 2g1lA 104 1.49e+01 1f4qA 165 1.51e+01 1alvA a.39.1.8 17360 1ktbA 405 1.54e+01 b.71.1.1,c.1.8.1 72960,72961 1ok0A 74 1.57e+01 b.5.1.1 93191 1h0pA 182 1.69e+01 b.62.1.1 76450 1bl3A 160 1.69e+01 1b9dA c.55.3.2 33655 2bbvA 363 1.71e+01 2bbvA b.121.4.4 23323 1vybA 238 1.72e+01 d.151.1.1 108897 1jb3A 131 1.76e+01 1jc7A b.40.3.2 62833 1frd 98 1.77e+01 1awd d.15.4.1 37648 1offA 97 1.84e+01 d.15.4.1 86947 1r8eA 278 1.85e+01 a.6.1.3,d.60.1.1 104843,104844 1euwA 152 1.90e+01 1dupA b.85.4.1 28349 1zkcA 197 2.07e+01 1o54A 277 2.10e+01 c.66.1.13 92482 1ekeA 230 2.27e+01 1ekeA c.55.3.1 33572 1f06A 320 2.33e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 2rmcA 182 2.39e+01 2cpl b.62.1.1 27491 2c5lC 117 2.42e+01 1xe1A 116 2.49e+01 b.43.3.1 109571 1nbfD 76 2.61e+01 d.15.1.1 80390 1o57A 291 2.68e+01 a.4.5.40,c.61.1.1 92483,92484 2fgtA 417 2.70e+01 1scuA 288 2.84e+01 2scuA c.2.1.8,c.23.4.1 30307,31135 1wmmA 145 2.86e+01 1y0bA 197 2.99e+01 1ihjA 98 3.02e+01 1pdr b.36.1.1 62382 1hf2A 210 3.03e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1zh2A 121 3.17e+01 2aj6A 159 3.23e+01 1ogwA 76 3.34e+01 d.15.1.1 87001 1yb0A 159 3.37e+01 1ag9A 175 3.50e+01 1rcf c.23.5.1 31178 1l4uA 176 3.51e+01 c.37.1.2 73568 1oboA 169 3.52e+01 c.23.5.1 86776 2fytA 340 3.53e+01 1agjA 242 3.56e+01 1agjA b.47.1.1 25827 1gpr 162 3.61e+01 1gpr b.84.3.1 28267 1rcf 169 3.67e+01 1rcf c.23.5.1 31170 1befA 181 3.68e+01 1befA b.47.1.3 26419 1w78A 422 3.85e+01 1kevA 351 3.97e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1yloA 348 4.05e+01 1f9aA 168 4.15e+01 1f9aA c.26.1.3 31602 1l7yA 94 4.21e+01 d.15.1.6 73676 1im5A 180 4.27e+01 c.33.1.3 66211 1w9hA 427 4.30e+01 1rdr 461 4.35e+01 1rdr e.8.1.4 43116 1hynP 379 4.38e+01 1hynP d.112.1.2 61408 1feuA 206 4.53e+01 1feuA b.53.1.1 59801 1l2tA 235 4.55e+01 c.37.1.12 73514 1yj1A 76 4.63e+01 1ra6A 461 4.67e+01 e.8.1.4 104879 1jqbA 351 4.68e+01 b.35.1.2,c.2.1.1 77151,77152 1zupA 315 4.74e+01 1wkaA 147 4.75e+01 1meqA 23 4.79e+01 j.53.1.1 79036 2d2eA 250 4.81e+01 1ubi 76 4.81e+01 1ubi d.15.1.1 37584 1qorA 327 4.82e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 2aj2A 208 4.89e+01 1aie 31 5.06e+01 1aie a.53.1.1 17829 1dg6A 191 5.15e+01 1d4vB b.22.1.1 23883 1miuA 738 5.41e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 1rz2A 254 5.43e+01 b.100.1.1 105130 1vl5A 260 5.46e+01 c.66.1.41 108720 1zndA 174 5.49e+01 1aq0A 306 5.51e+01 1aq0A c.1.8.3 28842 1w6sB 74 5.52e+01 2f5xA 312 5.57e+01 2furA 209 5.80e+01 2fmr 65 5.93e+01 2fmr d.51.1.1 38808 1wjnA 97 5.94e+01 2dafA 118 6.06e+01 1m7jA 484 6.11e+01 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 2iu4A 336 6.15e+01 1y51A 88 6.16e+01 1ojqA 212 6.24e+01 d.166.1.1 93146 1o5oA 221 6.24e+01 c.61.1.1 92509 1k47A 337 6.26e+01 d.14.1.5,d.58.26.4 72040,72041 1h8eA 510 6.27e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1oniA 137 6.28e+01 d.79.1.1 87144 2fomB 185 6.31e+01 2fm8A 135 6.36e+01 1sskA 158 6.41e+01 b.148.1.1 105986 1mkiA 330 6.45e+01 e.3.1.2 84994 1gpjA 404 6.53e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2al3A 90 6.55e+01 1seiA 130 6.58e+01 1seiA d.140.1.1 41463 2as0A 396 6.62e+01 2affA 120 6.63e+01 1jk3A 158 6.67e+01 d.92.1.11 66790 2gcuA 245 6.67e+01 1kqfB 294 6.77e+01 d.58.1.5,f.23.22.1 75900,75901 1bio 228 6.78e+01 5ptp b.47.1.2 26314 1qqsA 174 6.86e+01 1nglA b.60.1.1 27143 1cxyA 90 6.89e+01 1cyo d.120.1.1 41085 1q5hA 147 6.99e+01 b.85.4.1 95893 1x1mA 107 7.06e+01 1rk6A 496 7.07e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1nhs 447 7.07e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1a70 97 7.17e+01 1awd d.15.4.1 37678 1onrA 316 7.18e+01 1onrA c.1.10.1 29169 1czpA 98 7.21e+01 1awd d.15.4.1 37645 1vjtA 483 7.26e+01 c.2.1.5,d.162.1.2 100833,100834 1wgkA 114 7.29e+01 2aiqA 231 7.35e+01 1n00A 321 7.37e+01 a.65.1.1 85241 1xc3A 302 7.38e+01 1ss4A 153 7.40e+01 d.32.1.6 105976 1nf8A 207 7.53e+01 c.33.1.3 85630 1qy1A 174 7.66e+01 b.60.1.1 96568 1zu4A 320 7.66e+01 2f49C 30 7.69e+01 1uptC 170 7.74e+01 c.37.1.8 99769 1ve2A 235 7.79e+01 1e79A 510 7.83e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18269,26434,32314 2fb6A 117 7.87e+01 1nhp 447 7.90e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1mz4A 137 8.02e+01 a.3.1.1 91496 1zvtA 256 8.13e+01 1yub 245 8.16e+01 2ercA c.66.1.24 34219 1i2oA 316 8.18e+01 1onrA c.1.10.1 61574 1jv4A 162 8.19e+01 b.60.1.1 67343 1uzcA 71 8.25e+01 a.159.2.1 100222 1nf9A 207 8.32e+01 c.33.1.3 85631 1yopA 83 8.42e+01 1omrA 201 8.42e+01 a.39.1.5 93349 1xdwA 331 8.47e+01 1bob 320 8.49e+01 1bob d.108.1.1 40816 1az9 457 8.70e+01 1az9 c.55.2.1,d.127.1.1 33547,41164 1qahA 136 8.80e+01 d.79.1.1 96338 1yobA 179 8.82e+01 1vc3B 97 8.87e+01 1pufA 77 8.87e+01 a.4.1.1 95131 1hrnA 337 8.88e+01 1smrA b.50.1.2 26869 1xneA 113 8.90e+01 1s50A 259 8.94e+01 1ip9A 85 8.96e+01 1ip9A d.15.2.2 62638 1z5zA 271 9.00e+01