# List of top-scoring protein chains for T0362.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s5uA 138 3.10e-16 d.38.1.1 98573 1z54A 132 7.39e-16 2gf6A 135 3.12e-14 1lo7A 141 3.81e-14 d.38.1.1 74144 1lo9A 141 7.40e-14 d.38.1.1 74146 2cyeA 133 2.11e-13 1njkA 156 3.02e-13 d.38.1.1 85818 2av9A 147 5.32e-12 2aliA 158 9.34e-11 1yliA 153 1.00e-07 1vpmA 169 9.04e-07 2gvhA 288 3.72e-05 2h4uA 145 3.93e-04 2cy9A 140 5.60e-04 1y7uA 174 5.75e-04 1u1zA 168 8.09e-04 d.38.1.6 107602 2b3nA 159 1.14e-03 1ixlA 131 3.04e-03 d.38.1.5 90717 1zkiA 133 3.75e-03 1wluA 136 1.92e-02 1psuA 140 3.26e-02 d.38.1.5 88285 2fs2A 151 3.30e-02 2fl8A 602 1.27e-01 1iq6A 134 1.77e-01 d.38.1.4 76755 1c8uA 285 3.39e-01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1t82A 155 4.42e-01 d.38.1.5 106639 2b6eA 146 4.52e-01 1o0iA 138 5.94e-01 d.38.1.5 86532 2essA 248 6.13e-01 2cwzA 141 8.70e-01 1q4uA 151 3.12e+00 d.38.1.5 95828 1q6wA 161 3.28e+00 d.38.1.4 96000 2c08A 204 4.05e+00 1p6pA 125 4.40e+00 b.60.1.2 87839 1x03A 252 4.42e+00 1x04A 230 4.86e+00 1zhgA 139 4.97e+00 1z6bA 154 5.66e+00 1zwwA 256 6.13e+00 1ah9 71 7.01e+00 1ah9 b.40.4.5 25330 1widA 130 7.74e+00 1eg0B 148 1.05e+01 1pkp i.1.1.1 45808 1dv4E 145 1.05e+01 i.1.1.3 45875 1pkp 150 1.05e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1gwz 299 1.08e+01 2shpA c.45.1.2 32685 1te5A 257 1.10e+01 d.153.1.1 106795 1vh9A 149 1.13e+01 d.38.1.5 100653 1grj 158 1.15e+01 1grj a.2.1.1,d.26.1.2 15691,38433 2c58A 537 1.29e+01 1gqrA 532 1.49e+01 c.69.1.1 70374 1eeaA 534 1.50e+01 2bce c.69.1.1 34609 2dfpA 534 1.50e+01 2bce c.69.1.1 34597 2cekA 535 1.50e+01 1ea5A 537 1.50e+01 2bce c.69.1.1 34592 1ut6A 537 1.50e+01 1w6rA 543 1.51e+01 1hd0A 75 1.54e+01 1ha1 d.58.7.1 39188 1zxkA 98 1.58e+01 1hjxA 362 1.70e+01 c.1.8.5,d.26.3.1 83512,83513 2b1uA 71 1.70e+01 1owqA 361 1.72e+01 c.1.8.5,d.26.3.1 104041,104042 2bi0A 337 1.89e+01 2a4cA 99 1.98e+01 2c8mA 262 2.02e+01 1mrzA 293 2.05e+01 b.43.5.1,c.26.1.3 91452,91453 1kg0C 136 2.12e+01 d.169.1.1 72445 1x4zA 121 2.18e+01 2escA 361 2.21e+01 1vdkA 466 2.29e+01 a.127.1.1 100561 1j36A 607 2.36e+01 d.92.1.5 84054 2a4eA 215 2.37e+01 1sv8A 361 2.50e+01 c.1.8.5,d.26.3.1 99019,99020 2b3oA 532 2.60e+01 2a62A 322 2.75e+01 1zyoA 191 2.81e+01 1fprA 284 3.04e+01 2shpA c.45.1.2 59949 1xrvA 361 3.24e+01 2dpeA 361 3.65e+01 2bkwA 385 3.77e+01 1k9aA 450 3.86e+01 b.34.2.1,d.93.1.1,d.144.1.7 72188,72189,72190 1s9cA 298 3.94e+01 1qdlA 422 4.09e+01 1qdlA d.161.1.1 42088 1ovyA 120 4.28e+01 c.55.4.1 93624 1qgdA 662 4.31e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1r53A 382 4.51e+01 d.258.1.1 97063 1xlmA 394 4.53e+01 4xis c.1.15.3 29441 1xlaA 394 4.53e+01 4xis c.1.15.3 29445 4xiaA 393 4.61e+01 4xis c.1.15.3 29439 2fi1A 190 4.72e+01 1wguA 136 5.29e+01 1ocxA 182 5.31e+01 b.81.1.3 86814 2cswA 145 5.40e+01 1sh8A 154 5.54e+01 d.38.1.5 105549 1vh5A 148 5.59e+01 d.38.1.5 100642 1nrkA 328 5.84e+01 b.44.2.1,d.250.1.1 92089,92090 1vlyA 338 5.87e+01 b.44.2.1,d.250.1.1 108871,108872 2ctjA 95 6.08e+01 1eq2A 310 6.21e+01 1eq2A c.2.1.2 29814 2f4lA 297 6.26e+01 1c4zD 154 6.49e+01 1u9aA d.20.1.1 38331 1y6wA 148 6.50e+01 2tsrA 307 6.64e+01 1bkpA d.117.1.1 41043 1z82A 335 6.69e+01 1uocA 289 6.74e+01 c.55.3.9 99686 1nviD 81 6.75e+01 d.15.3.1 86241 1z7qC 258 6.75e+01 1fm0D 81 6.76e+01 1fmaD d.15.3.1 37642 2b6nA 278 6.84e+01 1n7hA 381 6.87e+01 c.2.1.2 80250 1qp2A 70 7.26e+01 1pse b.34.4.2 24596 1ifhL 218 7.28e+01 8fabA b.1.1.1,b.1.1.2 19790,20900 1hilA 217 7.28e+01 8fabA b.1.1.1,b.1.1.2 19786,20896 2ftbA 125 7.33e+01 1nj9B 215 7.63e+01 b.1.1.1,b.1.1.2 91899,91900 1tqxA 227 7.70e+01 1vm7A 311 7.77e+01 c.72.1.1 108884 1ab2 109 7.83e+01 1lckA d.93.1.1 40506 2cdhS 248 7.85e+01 1b4eA 323 7.88e+01 1b4kA c.1.10.3 29186 1r8sE 203 7.94e+01 a.118.3.1 97248 1h9hI 38 7.99e+01 g.3.2.1 103811 2d85A 124 8.01e+01 1r8mE 203 8.06e+01 a.118.3.1 97242 1tvs 75 8.26e+01 1tvs j.40.1.1 46303 1u8fO 335 8.64e+01 1znqO 338 8.67e+01 1hr0W 71 8.72e+01 1ah9 b.40.4.5 25329 1mjiA 182 8.76e+01 d.77.1.1 79208 1rp5A 702 8.98e+01 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 97694,97695,97696,97697