# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1f45B 197 3.05e-01 1f45B a.26.1.1 59642 1htjF 210 4.35e-01 1htjF a.91.1.1 61254 1w7jA 795 6.14e-01 1w33A 181 1.72e+00 1oe9A 795 1.78e+00 b.34.3.1,c.37.1.9 92792,92793 1m8jA 181 1.97e+00 c.26.1.3 84875 1ej2A 181 2.25e+00 1f9aA c.26.1.3 59414 1jyoE 105 5.34e+00 d.184.1.2 67487 1ark 60 8.09e+00 1bb9 b.34.2.1 24473 1hybA 181 8.80e+00 1f9aA c.26.1.3 61399 1jbgA 109 9.25e+00 a.6.1.3 66480 1aab 83 1.24e+01 1cktA a.21.1.1 16420 1ywmA 200 1.46e+01 2a08A 60 1.76e+01 1rcwA 231 1.80e+01 a.132.1.4 97299 1mnnA 340 1.82e+01 b.2.5.7 79324 1iiyA 101 1.94e+01 b.89.1.1 66152 1r0vA 305 1.98e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1f4kA 122 1.98e+01 1bm9A a.4.5.7 59646 1bm9A 122 2.06e+01 1bm9A a.4.5.7 16116 1uxaA 194 2.16e+01 b.21.1.1 108091 2fx0A 201 2.18e+01 1wkqA 164 2.28e+01 c.97.1.2 109393 1aba 87 2.44e+01 1aba c.47.1.1 32760 1eia 207 2.73e+01 1eia a.28.3.1,a.73.1.1 16951,18331 1ll2A 333 2.75e+01 c.68.1.14 74005 1b5eA 246 2.80e+01 1b5eA d.117.1.1 41056 1r8eA 278 2.87e+01 a.6.1.3,d.60.1.1 104843,104844 2azqA 311 3.16e+01 2cs3A 93 3.35e+01 2fpqA 444 3.37e+01 1aazA 87 3.41e+01 1aba c.47.1.1 32761 1d0yA 761 3.61e+01 1lvk b.34.3.1,c.37.1.9 24581,32178 2iugA 120 4.12e+01 2eiaB 206 4.16e+01 1eia a.28.3.1,a.73.1.1 16950,18330 1q8fA 313 4.17e+01 c.70.1.1 96203 2br9A 234 4.17e+01 1or7A 194 4.22e+01 a.4.13.2,a.177.1.1 87332,87333 1jnyA 435 4.23e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2dpkA 152 4.24e+01 1gw5B 591 4.30e+01 a.118.1.10 70630 1xizA 159 4.43e+01 2cj4A 150 4.52e+01 1czfA 362 4.69e+01 1czfA b.80.1.3 28031 1lvfA 110 4.70e+01 a.47.2.1 74280 1xteA 154 4.73e+01 1st0A 337 4.76e+01 d.13.1.3,d.246.1.1 98979,98980 1ll0A 339 4.86e+01 c.68.1.14 73995 1xwsA 313 4.94e+01 2pna 104 4.98e+01 1qadA d.93.1.1 40501 2ahqA 76 4.98e+01 1owqA 361 5.12e+01 c.1.8.5,d.26.3.1 104041,104042 1gk4D 84 5.17e+01 h.1.20.1 70206 1d8hA 311 5.18e+01 1d8iA d.63.1.1 39544 1ro0A 216 5.18e+01 d.264.1.2 97664 1ro2A 216 5.20e+01 d.264.1.2 97665 1tiyA 164 5.22e+01 c.97.1.2 107012 1wr2A 238 5.32e+01 2akaA 776 5.34e+01 1gk4A 84 5.44e+01 h.1.20.1 70203 2cp8A 54 5.53e+01 1z8fA 228 5.56e+01 1y74A 57 5.71e+01 2f1cX 286 5.71e+01 1gk4C 84 5.75e+01 h.1.20.1 70205 2bhwA 232 5.75e+01 1xhcA 367 5.83e+01 2kinB 100 5.92e+01 3kinB 1fzpB 123 6.07e+01 1fznD a.4.5.28 19008 2ifo 46 6.12e+01 2ifo h.1.4.1 45567 2g3kA 94 6.22e+01 1y1uA 585 6.23e+01 1rwtA 232 6.23e+01 f.43.1.1 97992 1cktA 71 6.28e+01 1cktA a.21.1.1 16417 1jgcA 161 6.28e+01 a.25.1.1 66673 1k2eA 156 6.39e+01 d.113.1.1 72010 1irqA 71 6.44e+01 a.43.1.4 66297 2bikB 313 6.51e+01 1ymmB 198 6.59e+01 1ukz 203 6.66e+01 1zin c.37.1.1 31840 1rj1A 151 6.69e+01 a.29.6.1 97526 1i1iP 681 6.73e+01 1i1iP d.92.1.5 40297 1l1oC 181 6.87e+01 b.40.4.3 73480 1ox3A 109 6.97e+01 h.1.17.1 93668 1zejA 293 7.16e+01 2dp5A 332 7.46e+01 1ootA 60 7.46e+01 b.34.2.1 93386 1t3kA 152 7.50e+01 c.46.1.1 106357 1h3fA 432 7.52e+01 c.26.1.1,d.66.1.4 76631,76632 1s4qA 228 7.57e+01 c.37.1.1 98507 1sq5A 308 7.61e+01 c.37.1.6 105882 1qk9A 92 7.63e+01 1qk9A d.10.1.3 37485 1t3wA 148 7.65e+01 1qbqA 333 7.82e+01 1ft1A a.118.6.1 19187 1fvuA 133 7.92e+01 1ixxB d.169.1.1 42345 1d8iA 311 7.92e+01 1d8iA d.63.1.1 39541 2rslA 140 8.00e+01 2rslA c.53.1.1 33345 1a6aB 187 8.06e+01 1iakB b.1.1.2,d.19.1.1 21616,38190 2a8kA 108 8.14e+01 2fkkA 206 8.27e+01 1icyA 37 8.30e+01 j.6.1.1 71192 1fj7A 101 8.34e+01 1fj7A d.58.7.1 39209 1bolA 222 8.34e+01 1bolA d.124.1.1 41120 1j6qA 136 8.45e+01 b.40.9.1 77091 2dnjA 260 8.65e+01 3dni d.151.1.1 41790 1ik7A 108 8.74e+01 a.77.1.2 71241 1l3aA 228 8.81e+01 d.18.1.2 73531 1n2aA 201 8.85e+01 a.45.1.1,c.47.1.5 91553,91554 3ezmA 101 8.91e+01 3ezmA b.89.1.1 28395 1r4gA 53 8.98e+01 a.8.5.1 96996