# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fe5A 94 9.04e-20 2fcfA 103 2.57e-19 1g9oA 91 4.87e-19 1pdr b.36.1.1 60400 2fneA 117 6.50e-19 1i92A 91 9.95e-19 1pdr b.36.1.1 61990 1tp5A 119 2.05e-18 1bfeA 119 5.30e-18 1pdr b.36.1.1 24775 1be9A 119 6.21e-18 1pdr b.36.1.1 24774 1qavA 90 7.03e-18 1qauA b.36.1.1 24777 1pdr 99 9.30e-18 1pdr b.36.1.1 24771 1n7eA 97 1.84e-17 b.36.1.1 91691 1q3oA 109 2.16e-17 b.36.1.1 95700 1n7fA 97 2.54e-17 b.36.1.1 91692 1qavB 115 1.07e-16 1qauA b.36.1.1 24780 1l6oA 95 2.41e-16 b.36.1.1 84534 1qauA 112 3.02e-16 1qauA b.36.1.1 24779 1ihjA 98 3.04e-16 1pdr b.36.1.1 62382 2h2bA 107 9.40e-16 2f0aA 98 9.76e-16 1b8qA 127 1.02e-15 1qauA b.36.1.1 24781 1n99A 166 2.32e-15 b.36.1.1,b.36.1.1 85459,85460 1i16 130 2.49e-15 1i16 b.36.1.2 24787 2h3lA 103 4.38e-15 1mfgA 95 5.94e-15 b.36.1.1 79043 1nf3C 128 6.35e-15 b.36.1.1 85596 1kwaB 88 6.90e-15 1kwaA b.36.1.1 24773 1kwaA 88 7.74e-15 1kwaA b.36.1.1 24772 1wf7A 103 1.73e-14 2f5yA 91 1.09e-13 1v5lA 103 1.42e-13 b.36.1.1 108378 1m5zA 91 2.09e-12 b.36.1.1 78676 1nteA 82 3.32e-12 b.36.1.1 86163 1r6jA 82 3.32e-12 b.36.1.1 97151 1fc6A 388 6.06e-11 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 2.45e-07 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 3.95e-07 1ky9B 448 5.34e-06 b.36.1.4,b.36.1.4,b.47.1.1 73200,73201,73202 1y8tA 324 2.71e-05 1sotA 320 3.25e-05 b.36.1.4,b.47.1.1 105852,105853 1ky9A 448 2.15e-04 b.36.1.4,b.47.1.1 73198,73199 1zn8A 180 3.07e-02 1qb7A 236 1.78e-01 1qb7A c.61.1.1 34087 1ao0A 459 2.46e-01 1ecfB c.61.1.1,d.153.1.1 34049,41816 1gph1 465 2.47e-01 1ecfB 1bx4A 345 3.40e-01 1bx4A c.72.1.1 34935 1db3A 372 3.62e-01 1db3A c.2.1.2 29813 2d4pA 141 9.19e-01 1lnzA 342 1.05e+00 b.117.1.1,c.37.1.8 78112,78113 1fxlA 167 1.79e+00 1b7fA d.58.7.1,d.58.7.1 39183,39184 1x3mA 415 2.18e+00 1fdr 248 2.42e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 1uc2A 481 2.59e+00 d.261.1.1 99161 2gwnA 452 2.70e+00 1t6t1 118 2.87e+00 1yg9A 330 2.90e+00 2fe7A 166 3.68e+00 1vqqA 646 3.87e+00 1evfA 264 4.52e+00 1bkpA d.117.1.1 40932 1xx6A 191 4.88e+00 1qqqA 264 4.96e+00 1bkpA d.117.1.1 40931 2g8oA 264 5.04e+00 2g8mA 264 5.28e+00 1eu1A 780 5.35e+00 1dmr b.52.2.2,c.81.1.1 26903,35311 1opr 213 5.35e+00 1opr c.61.1.1 34091 1lh0A 213 5.79e+00 c.61.1.1 73896 1ad3A 452 6.10e+00 1ad3A c.82.1.1 35335 1mwrA 646 6.38e+00 d.17.4.5,d.175.1.1,e.3.1.1 79586,79587,79588 1aiqA 264 6.48e+00 1bkpA d.117.1.1 40967 1q52A 314 7.33e+00 c.14.1.3 95846 1axwA 265 7.86e+00 1bkpA d.117.1.1 40938 1tys 265 7.93e+00 1bkpA d.117.1.1 40937 1g2qA 187 8.12e+00 c.61.1.1 65117 1fwkA 296 8.66e+00 1fwkA d.14.1.5,d.58.26.1 37576,39398 1j08A 226 8.94e+00 c.47.1.2,c.47.1.2 83855,83856 1mwsA 646 9.29e+00 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 1uh5A 329 1.13e+01 c.2.1.2 107840 1vpqA 273 1.28e+01 1l1dA 152 1.42e+01 b.88.1.3 73452 1y0bA 197 1.45e+01 2bh8A 101 1.47e+01 1h72C 296 1.49e+01 d.14.1.5,d.58.26.1 60712,60713 1zm8A 259 1.49e+01 1fr3A 67 1.51e+01 1fr3A b.40.6.1 25436 1ciqA 40 1.52e+01 2sniI d.40.1.1 38576 1jalA 363 1.53e+01 c.37.1.8,d.15.10.2 84138,84139 1koe 172 1.55e+01 1koe d.169.1.5 42448 1ah1 129 1.56e+01 1ah1 b.1.1.1 20652 1lckA 175 1.62e+01 1lckA b.34.2.1,d.93.1.1 24552,40421 1fm0E 150 1.64e+01 1fmaE d.41.5.1 38629 2fa1A 160 1.68e+01 1bu6O 501 1.69e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1fmaE 150 1.69e+01 1fmaE d.41.5.1 38630 1w78A 422 1.69e+01 1csp 67 1.70e+01 1mjc b.40.4.5 25321 2tscA 264 1.75e+01 1bkpA d.117.1.1 40952 1xv5A 401 1.75e+01 1eb0A 147 1.80e+01 b.107.1.1,d.58.38.1 64890,64891 1jzxK 205 1.82e+01 i.1.1.2 67885 1lkkA 105 1.83e+01 1lckA d.93.1.1 40412 1lcjA 109 1.87e+01 1qadA d.93.1.1 40414 2sxl 88 1.91e+01 1b7fA d.58.7.1 39179 1ecfA 504 1.92e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1jv2B 692 1.94e+01 b.1.15.1,c.62.1.1,d.200.1.1,g.3.11.6,g.3.11.6 67338,67339,67340,67341,67342 1w30A 201 1.94e+01 1ecfB 504 1.98e+01 1ecfB c.61.1.1,d.153.1.1 34054,41821 2cc0A 195 2.02e+01 1earA 147 2.09e+01 b.107.1.1,d.58.38.1 64875,64876 1mkmA 249 2.10e+01 a.4.5.33,d.110.2.2 79242,79243 1rypB 250 2.20e+01 1rypB d.153.1.4 41933 1uisA 231 2.25e+01 d.22.1.1 99431 1sw5A 275 2.27e+01 c.94.1.1 106069 3sxlA 184 2.28e+01 1b7fA d.58.7.1,d.58.7.1 39173,39174 1r62A 160 2.43e+01 d.122.1.3 104816 1f3z 161 2.44e+01 1gpr b.84.3.1 28273 1reqD 637 2.45e+01 1reqB c.1.19.1,c.23.6.1 29623,31250 1g7rA 594 2.45e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25716,25717,31034,32149 1ggrA 168 2.47e+01 1gpr b.84.3.1 28279 1wnfA 328 2.52e+01 7reqB 637 2.58e+01 1reqB c.1.19.1,c.23.6.1 29617,31244 1o63A 219 2.60e+01 c.94.1.1 92540 3mefA 69 2.62e+01 1mjc b.40.4.5 25320 1t3qB 788 2.68e+01 d.41.1.1,d.133.1.1 106369,106370 1reqB 637 2.72e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1yjmA 110 2.76e+01 1zq9A 285 2.78e+01 1oroA 213 2.81e+01 1opr c.61.1.1 34093 1r13A 148 2.84e+01 d.169.1.1,h.1.1.1 96782,96783 1poiA 317 2.86e+01 1poiA c.124.1.2 34153 1wlsA 328 2.87e+01 1n6aA 259 2.88e+01 b.76.2.1,b.85.7.1 80121,80122 1fxrA 64 2.99e+01 1fxd d.58.1.4 38993 1rxxA 421 3.03e+01 d.126.1.4 98061 1iezA 217 3.08e+01 d.115.1.2 66129 1oi7A 288 3.13e+01 c.2.1.8,c.23.4.1 87049,87050 1se8A 301 3.15e+01 b.40.4.3 105448 1ti6A 875 3.16e+01 b.52.2.2,c.81.1.1 106974,106975 1vkmA 297 3.16e+01 c.138.1.1 108670 1ojhA 65 3.22e+01 a.214.1.1 103976 1kw4A 89 3.25e+01 a.60.1.2 73077 1c9oA 66 3.27e+01 1mjc b.40.4.5 25325 1g7tA 594 3.28e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25714,25715,31033,32148 1glaF 168 3.29e+01 1gpr b.84.3.1 28274 2bb3A 221 3.47e+01 2ckiA 262 3.58e+01 1efvA 315 3.67e+01 1efvA c.26.2.3,c.31.1.2 31633,31728 1d4vB 163 3.69e+01 1d4vB b.22.1.1 23884 1xdnA 277 3.71e+01 2abwA 227 3.81e+01 1g7sA 594 3.92e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1dmr 823 3.95e+01 1dmr b.52.2.2,c.81.1.1 26904,35312 1cliA 345 3.95e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1tsm 316 4.09e+01 1bkpA d.117.1.1 41024 2f69A 261 4.14e+01 1g57A 217 4.21e+01 1g57A d.115.1.2 60253 1eno 312 4.24e+01 1enp c.2.1.2 29905 1enp 312 4.29e+01 1enp c.2.1.2 29906 1zsyA 357 4.35e+01 1nscA 390 4.36e+01 2qwc b.68.1.1 27591 1h3iA 293 4.38e+01 b.76.2.1,b.85.7.1 76635,76636 1ugmA 125 4.46e+01 d.15.1.3 107827 1mt6A 280 4.53e+01 b.76.2.1,b.85.7.1 79446,79447 1cis 66 4.53e+01 2sniI k.1.1.1 46375 1iyu 79 4.61e+01 1iyu b.84.1.1 28227 1w07A 659 4.61e+01 2f51A 118 4.70e+01 1viuA 203 4.72e+01 d.113.1.1 100771 1amz 435 4.72e+01 1csh a.103.1.1 18884 1hvyA 288 4.75e+01 1bkpA d.117.1.1 41049 2sniI 83 4.86e+01 2sniI d.40.1.1 38573 1d7oA 297 4.88e+01 1enp c.2.1.2 29907 2bgiA 272 4.90e+01 1zoxA 113 5.09e+01 1f28A 297 5.23e+01 1bkpA d.117.1.1 59608 1mo1A 87 5.24e+01 d.94.1.1 91363 1sw5B 275 5.30e+01 c.94.1.1 106070 1mjc 69 5.33e+01 1mjc b.40.4.5 25319 2cyjA 118 5.53e+01 2h03A 291 5.57e+01 2bsyA 278 5.60e+01 1fy7A 278 5.70e+01 1fy7A d.108.1.1 40817 1ueoA 63 5.73e+01 j.107.1.1 99269 1mq7A 154 5.74e+01 b.85.4.1 79404 1gky 187 5.75e+01 1gky c.37.1.1 31839 2nsyA 271 5.75e+01 2nsyA c.26.2.1 31612 1ih8A 271 5.75e+01 2nsyA c.26.2.1 62377 1kqpA 271 5.77e+01 c.26.2.1 72883 1e6oH 219 5.78e+01 1igtB b.1.1.1,b.1.1.2 20495,21453 1nsyA 271 5.79e+01 2nsyA c.26.2.1 31614 1tzfA 259 5.79e+01 c.68.1.13 107476 1dg6A 191 5.80e+01 1d4vB b.22.1.1 23883 1u9yA 284 5.81e+01 2hc1A 291 5.88e+01 1to2I 64 6.04e+01 1csh 435 6.14e+01 1csh a.103.1.1 18880 1al6 437 6.17e+01 1csh a.103.1.1 18885 1b7fA 168 6.20e+01 1b7fA d.58.7.1,d.58.7.1 39169,39170 1dfd 64 6.25e+01 1fxd d.58.1.4 38995 1xmrA 243 6.69e+01 1jkgB 250 6.72e+01 d.17.4.2 66796 1x0lA 333 6.75e+01 1hcz 252 6.76e+01 1hcz b.2.6.1,b.84.2.2 22464,28250 1a4yA 460 6.84e+01 1a4yA c.10.1.1 30852 2cwaA 263 6.86e+01 1wmiA 90 6.97e+01 1jn5B 250 7.01e+01 d.17.4.2 66922 2c71A 216 7.07e+01 2fvgA 340 7.09e+01 1h3qA 140 7.15e+01 d.110.4.3 76652 1mlcB 218 7.17e+01 1igtB b.1.1.1,b.1.1.2 20053,21095 1o4rA 108 7.18e+01 d.93.1.1 92469 1dpuA 99 7.24e+01 1dpuA a.4.5.16 16150 1dax 64 7.28e+01 1fxd d.58.1.4 38996 1z1dA 103 7.33e+01 1lw6I 64 7.36e+01 d.40.1.1 74294 1rbp 182 7.50e+01 1aqb b.60.1.1 27085 1n0qA 93 7.55e+01 k.37.1.1 79754 1f9zA 135 7.65e+01 1qipA d.32.1.1 38484 1oihA 301 7.72e+01 b.82.2.5 93051 1ypvA 313 7.73e+01 1shaA 104 7.73e+01 1fmk d.93.1.1 40424 1shbA 104 7.74e+01 1fmk d.93.1.1 40425 1a8uA 277 7.76e+01 1brt c.69.1.12 34703 2b8tA 223 7.82e+01 1lvoA 302 7.85e+01 b.47.1.4 74284 1vcaA 202 7.94e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1p9uA 302 8.14e+01 b.47.1.4 88001 1epwA 1290 8.27e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1gceA 364 8.34e+01 1gceA e.3.1.1 42738 1cixA 44 8.36e+01 g.3.6.2 70066 1vraB 215 8.41e+01 1fa8A 135 8.45e+01 1qipA d.32.1.1 38486 1h9oA 112 8.45e+01 1qadA d.93.1.1 60837 1jxmA 301 8.57e+01 b.34.2.1,c.37.1.1 67420,67421 1jnyA 435 8.63e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1shwA 138 8.66e+01 b.6.1.5 105562 1coaI 64 8.77e+01 2sniI d.40.1.1 38574 1ifyA 49 8.85e+01 a.5.2.1 71207 1b9vA 390 8.90e+01 2qwc b.68.1.1 27603 1bfi 112 8.91e+01 1qadA d.93.1.1 40499 2az4A 429 8.98e+01