# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fe5A 94 8.41e-15 2fneA 117 2.63e-14 1g9oA 91 3.02e-14 1pdr b.36.1.1 60400 2fcfA 103 4.63e-14 1tp5A 119 6.04e-14 1qavA 90 3.56e-13 1qauA b.36.1.1 24777 1ihjA 98 1.31e-12 1pdr b.36.1.1 62382 1n7eA 97 1.45e-12 b.36.1.1 91691 1q3oA 109 1.61e-12 b.36.1.1 95700 1n7fA 97 1.64e-12 b.36.1.1 91692 2h2bA 107 4.65e-12 2f0aA 98 6.69e-12 1nf3C 128 3.05e-11 b.36.1.1 85596 1kwaA 88 3.21e-11 1kwaA b.36.1.1 24772 1mfgA 95 3.35e-11 b.36.1.1 79043 2h3lA 103 3.40e-11 1qauA 112 5.62e-11 1qauA b.36.1.1 24779 2f5yA 91 6.41e-11 1wf7A 103 7.05e-11 1r6jA 82 1.85e-09 b.36.1.1 97151 1fc6A 388 9.51e-06 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 5.06e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 5.78e-05 1y8tA 324 1.80e-03 1zn8A 180 4.93e-02 1qb7A 236 1.86e-01 1qb7A c.61.1.1 34087 1fxlA 167 2.18e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1h72C 296 1.55e+00 d.14.1.5,d.58.26.1 60712,60713 1yg9A 330 1.90e+00 1bx4A 345 1.96e+00 1bx4A c.72.1.1 34935 1x3mA 415 2.22e+00 1cliA 345 2.74e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1fdr 248 3.03e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 1o63A 219 3.50e+00 c.94.1.1 92540 1xx6A 191 3.64e+00 1q52A 314 3.91e+00 c.14.1.3 95846 1se8A 301 6.57e+00 b.40.4.3 105448 1vcaA 202 7.09e+00 1vcaA b.1.1.3,b.1.1.4 21649,21685 2az4A 429 7.13e+00 1o6dA 163 7.45e+00 c.116.1.3 92567 1xv5A 401 7.76e+00 1g2qA 187 8.37e+00 c.61.1.1 65117 1lh0A 213 9.77e+00 c.61.1.1 73896 2bhoA 130 1.08e+01 1uh5A 329 1.10e+01 c.2.1.2 107840 2gwnA 452 1.12e+01 1mkmA 249 1.13e+01 a.4.5.33,d.110.2.2 79242,79243 1r31A 428 1.14e+01 d.58.20.1,d.179.1.1 96897,96898 2d4pA 141 1.22e+01 1l1qA 186 1.36e+01 c.61.1.1 77653 1rypB 250 1.37e+01 1rypB d.153.1.4 41933 2bsjA 133 1.39e+01 1zxxA 319 1.42e+01 1qqqA 264 1.43e+01 1bkpA d.117.1.1 40931 2g8oA 264 1.44e+01 1bu6O 501 1.48e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 2g8mA 264 1.50e+01 1w78A 422 1.59e+01 1r62A 160 1.62e+01 d.122.1.3 104816 2brfA 110 1.69e+01 1vpqA 273 1.77e+01 1uc2A 481 1.90e+01 d.261.1.1 99161 1fr3A 67 1.91e+01 1fr3A b.40.6.1 25436 1y0bA 197 1.98e+01 1jmuB 666 2.00e+01 1t6t1 118 2.04e+01 1cq3A 233 2.09e+01 1cq3A b.27.1.1 23923 1csh 435 2.12e+01 1csh a.103.1.1 18880 1yqfA 203 2.15e+01 1j24A 143 2.16e+01 c.52.1.20 84008 1euwA 152 2.19e+01 1dupA b.85.4.1 28349 2bw3A 534 2.20e+01 2bikB 313 2.23e+01 1fjrA 195 2.35e+01 1fjrA b.102.1.1 59855 1wlsA 328 2.48e+01 2fvgA 340 2.50e+01 1n6aA 259 2.50e+01 b.76.2.1,b.85.7.1 80121,80122 2bh8A 101 2.50e+01 1jalA 363 2.53e+01 c.37.1.8,d.15.10.2 84138,84139 1u9yA 284 2.60e+01 2iu4A 336 2.65e+01 1eu1A 780 2.65e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1o7fA 469 2.95e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1dmgA 225 3.01e+01 1dmgA c.22.1.1 31036 2fvtA 135 3.07e+01 1f28A 297 3.08e+01 1bkpA d.117.1.1 59608 1ecfA 504 3.18e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1ti6A 875 3.19e+01 b.52.2.2,c.81.1.1 106974,106975 1g57A 217 3.22e+01 1g57A d.115.1.2 60253 1a8y 367 3.27e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1w94A 156 3.33e+01 1koe 172 3.35e+01 1koe d.169.1.5 42448 1dg6A 191 3.36e+01 1d4vB b.22.1.1 23883 2ghpA 292 3.52e+01 2b8tA 223 3.53e+01 1h65A 270 3.64e+01 c.37.1.8 65640 2f69A 261 3.70e+01 1xdnA 277 3.70e+01 1vkmA 297 3.74e+01 c.138.1.1 108670 1hw7A 255 3.76e+01 1i7fA d.193.1.1 61297 1rwzA 245 3.77e+01 d.131.1.2,d.131.1.2 98005,98006 1ueoA 63 3.85e+01 j.107.1.1 99269 1h3gA 601 3.92e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1y791 680 3.93e+01 1mo1A 87 3.94e+01 d.94.1.1 91363 2f9dA 125 3.94e+01 1xs1A 193 3.98e+01 1vraB 215 4.06e+01 2anuA 255 4.09e+01 1yloA 348 4.13e+01 1xxqA 161 4.17e+01 1vchA 175 4.21e+01 1rypL 212 4.22e+01 d.153.1.4 41880 1p0zA 131 4.24e+01 d.110.6.1 93882 2bsyA 278 4.36e+01 1wl4A 397 4.48e+01 1behA 187 4.55e+01 1a44 b.17.1.1 23700 1i1wA 303 4.59e+01 c.1.8.3 76732 2bb3A 221 4.59e+01 2cyjA 118 4.61e+01 2bw4A 340 4.85e+01 1zkkA 167 4.90e+01 2hc1A 291 5.01e+01 1sw5A 275 5.01e+01 c.94.1.1 106069 1u0mA 382 5.11e+01 c.95.1.2,c.95.1.2 107557,107558 2h03A 291 5.12e+01 1y7lA 316 5.12e+01 2cw8A 537 5.23e+01 1d4oA 184 5.27e+01 1d4oA c.31.1.4 31748 1zq9A 285 5.29e+01 1l1dA 152 5.30e+01 b.88.1.3 73452 1vdmA 153 5.37e+01 1p7tA 731 5.52e+01 c.1.13.1 94319 1zm8A 259 5.53e+01 1uthA 315 5.60e+01 c.94.1.1 108032 1o12A 376 5.60e+01 b.92.1.5,c.1.9.10 80758,80759 1fm0E 150 5.61e+01 1fmaE d.41.5.1 38629 1lk2B 99 5.69e+01 b.1.1.2 91058 2gm5A 139 5.73e+01 1llnA 262 5.76e+01 d.165.1.1 84625 1vqqA 646 5.79e+01 1vj0A 380 5.85e+01 b.35.1.2,c.2.1.1 100786,100787 1l0bA 229 5.86e+01 c.15.1.3,c.15.1.3 73391,73392 1eceA 358 5.89e+01 1eceA c.1.8.3 28813 1g6sA 427 6.15e+01 1eps d.68.2.2 39584 1qgdA 662 6.19e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1to2I 64 6.22e+01 2ptd 298 6.31e+01 2plc c.1.18.2 29605 2aamA 309 6.42e+01 2fe7A 166 6.43e+01 1ypvA 313 6.46e+01 2fdiA 211 6.49e+01 1oihA 301 6.60e+01 b.82.2.5 93051 1fxkC 133 6.71e+01 1fxkC a.2.5.1 15702 1p35A 299 6.81e+01 1p35A b.28.1.1 23925 1h3qA 140 6.84e+01 d.110.4.3 76652 1d7oA 297 7.07e+01 1enp c.2.1.2 29907 1w2xA 758 7.07e+01 c.14.1.4,c.14.1.4 109134,109135 1ojhA 65 7.12e+01 a.214.1.1 103976 1t0hB 224 7.15e+01 c.37.1.1 106208 1hh1A 143 7.21e+01 1gefA c.52.1.18 61036 1quqA 129 7.27e+01 1quqA b.40.4.3 25303 1sw5B 275 7.44e+01 c.94.1.1 106070 1b0uA 262 7.49e+01 1b0uA c.37.1.12 32370 1yqgA 263 7.52e+01 1kk1A 410 7.59e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2cq2A 114 7.62e+01 1x8vA 455 7.69e+01 1htrB 329 7.75e+01 1smrA 1ef8A 261 7.86e+01 1ef8A c.14.1.3 30921 1q1rA 431 7.87e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1wrvA 308 7.88e+01 1brt 277 7.93e+01 1brt c.69.1.12 34699 1yy6A 155 7.94e+01 1ako 268 7.97e+01 1ako d.151.1.1 41779 2fa1A 160 8.05e+01 2f9fA 177 8.06e+01 1odkA 235 8.08e+01 c.56.2.1 86863 1o4rA 108 8.16e+01 d.93.1.1 92469 2f4wA 187 8.23e+01 1b25A 619 8.32e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1kw4A 89 8.40e+01 a.60.1.2 73077 1ugmA 125 8.42e+01 d.15.1.3 107827 1gpjA 404 8.60e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2ckiA 262 8.62e+01 1w9gA 104 8.70e+01 1bg4 302 8.71e+01 1taxA c.1.8.3 28806 2rslA 140 8.74e+01 2rslA c.53.1.1 33345 1g8sA 230 8.80e+01 c.66.1.3 90507 1bb9 115 8.82e+01 1bb9 b.34.2.1 24554 2bs3A 656 8.85e+01