# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zxmA 400 5.30e-01 1y2qA 143 1.15e+00 1pvgA 418 1.39e+00 d.14.1.3,d.122.1.2 95161,95162 1epuA 591 1.68e+00 1dn1A e.25.1.1 43358 1tqjA 230 1.96e+00 c.1.2.2 107228 1w25A 459 2.41e+00 1gesA 450 3.47e+00 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2bcqA 335 4.57e+00 1v6tA 255 4.60e+00 1rztA 331 4.68e+00 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2ci1A 275 5.18e+00 1xsnA 335 5.21e+00 2ewtA 71 5.46e+00 1y8qB 640 5.96e+00 1jg1A 235 7.25e+00 c.66.1.7 66661 1rz3A 201 7.62e+00 c.37.1.6 98132 1trb 320 8.63e+00 1trb c.3.1.5,c.3.1.5 30529,30530 1wy7A 207 8.95e+00 1mp9A 198 9.69e+00 d.129.1.1,d.129.1.1 91385,91386 1rpjA 288 9.99e+00 2dri c.93.1.1 35656 1s69A 124 1.01e+01 a.1.1.1 105305 1o7fA 469 1.02e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1dlyA 164 1.27e+01 1dlyA a.1.1.1 14983 1rtxA 123 1.27e+01 a.1.1.1 97827 1wqaA 455 1.32e+01 1aisA 182 1.39e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1vljA 407 1.47e+01 e.22.1.2 108832 2bkrA 212 1.54e+01 1pt7A 437 1.55e+01 c.123.1.1 95093 1rcf 169 1.59e+01 1rcf c.23.5.1 31170 1u7iA 136 1.62e+01 d.32.1.7 107724 1l3iA 192 1.62e+01 c.66.1.22 77676 1vzsA 76 1.77e+01 f.45.1.1 108972 1cx4A 305 1.83e+01 b.82.3.2,b.82.3.2 59099,59100 1vjtA 483 1.92e+01 c.2.1.5,d.162.1.2 100833,100834 1zowA 313 2.00e+01 1qhxA 178 2.02e+01 1qhsA c.37.1.3 31936 1vdxA 184 2.06e+01 1zwxA 301 2.06e+01 1omwA 689 2.12e+01 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1xt9A 212 2.17e+01 1bkpA 278 2.23e+01 1bkpA d.117.1.1 41029 2fcr 173 2.29e+01 1rcf c.23.5.1 31151 1gudA 288 2.34e+01 c.93.1.1 83326 1h8eG 272 2.35e+01 1e79G c.49.2.1 60756 1lt8A 406 2.44e+01 c.1.26.1 78186 1wijA 140 2.44e+01 1xpiA 231 2.53e+01 1z4rA 168 2.57e+01 1vgjA 184 2.59e+01 1ssfA 156 2.82e+01 b.34.9.1,b.34.9.1 105982,105983 3dni 260 2.85e+01 3dni d.151.1.1 41791 2fm8A 135 2.98e+01 1s28A 132 3.02e+01 d.198.1.1 105223 1q7eA 428 3.05e+01 c.123.1.1 96035 1kk1A 410 3.05e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1rzhH 260 3.06e+01 b.41.1.1,f.23.10.1 98162,98163 1hn2A 159 3.06e+01 b.60.1.1 65890 1wjtA 103 3.08e+01 1gt1A 159 3.10e+01 b.60.1.1 90515 1xniA 118 3.17e+01 1yoxA 250 3.20e+01 1fit 147 3.21e+01 1fit d.13.1.1 37499 1qovH 260 3.22e+01 6prcH b.41.1.1,f.23.10.1 25464,43457 1v9kA 228 3.26e+01 d.265.1.3 108449 1vmbA 140 3.34e+01 1f4pA 147 3.39e+01 5nul c.23.5.1 59651 1oboA 169 3.40e+01 c.23.5.1 86776 1a8p 258 3.41e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1ufkA 254 3.44e+01 c.66.1.39 99340 1gheA 177 3.46e+01 d.108.1.1 76222 2culA 232 3.47e+01 1r9gA 216 3.52e+01 c.23.16.1 97258 1obpA 159 3.67e+01 1obpA b.60.1.1 27092 1c44A 123 3.70e+01 1qndA d.106.1.1 40795 1y7rA 133 3.97e+01 1tueB 218 4.03e+01 b.91.1.1 107324 2c6cA 707 4.06e+01 2a40B 260 4.13e+01 1nm2A 317 4.17e+01 c.19.1.1,d.58.23.1 80654,80655 1ltqA 301 4.17e+01 c.108.1.9,c.37.1.1 78208,78209 1u5tC 202 4.18e+01 a.4.5.54,a.4.5.54 107688,107689 1ft5A 211 4.25e+01 1bvb a.138.1.3 19681 1php 394 4.30e+01 16pk c.86.1.1 35452 1bvyF 191 4.30e+01 1bvyF c.23.5.1 31207 1r8sE 203 4.40e+01 a.118.3.1 97248 2abwA 227 4.40e+01 2dnjA 260 4.65e+01 3dni d.151.1.1 41790 2bgiA 272 4.66e+01 1b1cA 181 4.93e+01 1amoA c.23.5.2 31212 1iyxA 432 5.05e+01 c.1.11.1,d.54.1.1 83815,83816 1rypH 205 5.27e+01 d.153.1.4 41876 1vm6A 228 5.35e+01 c.2.1.3,d.81.1.3 108876,108877 2a2kA 175 5.55e+01 1mwmA 320 5.61e+01 c.55.1.1,c.55.1.1 79580,79581 2c8vA 288 5.63e+01 1wvcA 259 5.64e+01 1ekgA 127 5.64e+01 1dlxA d.82.2.1 40021 4tmkA 213 5.70e+01 5tmpA c.37.1.1 31930 1cliA 345 5.73e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1m6iA 493 5.95e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2cqeA 98 6.00e+01 1v8bA 479 6.03e+01 2fliA 220 6.03e+01 2bkqA 212 6.04e+01 1to6A 371 6.14e+01 c.141.1.1 107170 2lbp 346 6.25e+01 2liv c.93.1.1 35709 1yz7A 188 6.37e+01 1rpxA 230 6.50e+01 1rpxA c.1.2.2 28536 1j98A 157 6.52e+01 1j98A d.185.1.2 62755 1ezwA 349 6.53e+01 1ezwA c.1.16.3 29558 2erxA 172 6.61e+01 1kv7A 488 6.63e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1ddwA 120 6.64e+01 1evhA b.55.1.4 27001 1usgA 346 6.71e+01 c.93.1.1 99864 2bjiA 277 6.71e+01 2b6hA 192 6.72e+01 3grs 478 6.82e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1za7A 165 6.83e+01 1n2sA 299 6.87e+01 c.2.1.2 79857 1i1iP 681 6.94e+01 1i1iP d.92.1.5 40297 2ctoA 93 7.17e+01 1b00A 127 7.19e+01 3chy c.23.1.1 31122 1vlbA 907 7.21e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1cznA 169 7.22e+01 1rcf c.23.5.1 31181 1qhfA 240 7.24e+01 1qhfA c.60.1.1 33960 1hlrA 907 7.30e+01 1oqvA 192 7.44e+01 d.24.1.2 87320 1ki9A 192 7.52e+01 c.37.1.1 84404 2cfaA 217 7.61e+01 1i06A 180 7.63e+01 1mup b.60.1.1 27131 1ug7A 128 7.72e+01 a.24.24.1 107824 1gefA 123 7.79e+01 1gefA c.52.1.18 60465 2czdA 208 8.00e+01 2ajrA 331 8.01e+01 1tk9A 188 8.02e+01 c.80.1.3 107082 1tzfA 259 8.07e+01 c.68.1.13 107476 1e79G 272 8.13e+01 1e79G c.49.2.1 33158 1wmqA 147 8.24e+01 1js3A 486 8.33e+01 c.67.1.6 67215 1v60A 123 8.34e+01 1cqxA 403 8.35e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1e6uA 321 8.42e+01 1bsvA c.2.1.2 29805 2b4gA 317 8.47e+01 1au1A 166 8.51e+01 1ifa a.26.1.3 16889 1veaA 148 8.53e+01 d.275.1.1 108529 1fvuB 125 8.55e+01 1ixxB d.169.1.1 42346 1y9aA 360 8.55e+01 1wgrA 100 8.62e+01 1oe8A 211 8.62e+01 a.45.1.1,c.47.1.5 86905,86906 2liv 344 8.63e+01 2liv c.93.1.1 35708 1b5eA 246 8.65e+01 1b5eA d.117.1.1 41056 1i05A 180 8.74e+01 1mup b.60.1.1 27130 1bc8C 93 8.75e+01 1awcA a.4.5.21 16168 1z15A 344 8.78e+01 1xl3C 92 8.85e+01 1cwpA 190 8.87e+01 1cwpA b.121.4.5 23305 1xtqA 177 8.91e+01 1wqsA 173 8.95e+01