# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gs9A 165 1.34e+00 a.24.1.1 83313 1le4 144 1.36e+00 1nfn a.24.1.1 16528 1xqaA 113 1.66e+00 2ahqA 76 1.97e+00 1lpe 144 2.53e+00 1nfn a.24.1.1 16524 1or3A 165 2.78e+00 1nfn a.24.1.1 16522 1bz4A 144 2.85e+00 1nfn a.24.1.1 16521 1fjgP 88 2.88e+00 1emwA d.27.1.1 38444 1emwA 88 2.90e+00 1emwA d.27.1.1 38448 2bh8A 101 3.09e+00 1b68A 191 3.32e+00 1nfn a.24.1.1 59076 2cviA 83 6.65e+00 2eshA 118 7.08e+00 1nfn 191 7.57e+00 1nfn a.24.1.1 16523 2b20A 403 8.61e+00 2g0uA 92 8.66e+00 1aoiC 116 8.80e+00 1aoiC a.22.1.1 16440 1exrA 148 9.14e+00 1cll a.39.1.5 17299 1aoiG 116 9.20e+00 1aoiC a.22.1.1 16441 1y0vH 146 9.38e+00 6acn 754 9.53e+00 1amj c.8.2.1,c.83.1.1 30721,35397 1wqgA 185 1.09e+01 1xfxO 149 1.13e+01 1q48A 134 1.16e+01 d.224.1.2 95783 1ywlA 96 1.19e+01 1b0jA 754 1.43e+01 1amj c.8.2.1,c.83.1.1 30719,35395 1osa 148 1.43e+01 1cll a.39.1.5 17300 3cln 148 1.44e+01 1cll a.39.1.5 17286 1hfoA 113 1.50e+01 d.80.1.3 61006 1xawA 140 1.57e+01 1z5yE 149 1.57e+01 1k3eA 156 1.61e+01 d.198.1.1 68103 1n91A 108 1.65e+01 d.206.1.1 80326 1hynP 379 1.68e+01 1hynP d.112.1.2 61408 1wr2A 238 1.74e+01 1ahr 146 1.76e+01 1cll a.39.1.5 17287 1cll 148 1.79e+01 1cll a.39.1.5 17263 1i9gA 280 1.79e+01 c.66.1.13 62090 1zhvA 134 1.83e+01 1yirA 408 1.90e+01 7acn 754 1.93e+01 1amj c.8.2.1,c.83.1.1 30717,35393 1c7iA 489 1.93e+01 1thg c.69.1.1 34632 2f3yA 148 1.94e+01 8acn 754 1.96e+01 1amj c.8.2.1,c.83.1.1 30724,35400 1amj 754 2.06e+01 1amj c.8.2.1,c.83.1.1 30725,35401 1q38A 89 2.15e+01 b.1.2.1 95663 1wp5A 323 2.17e+01 1jy2O 56 2.19e+01 h.1.8.1 67441 1jy3O 56 2.19e+01 h.1.8.1 67447 1g4yR 148 2.22e+01 1cll a.39.1.5 60252 3proC 166 2.31e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1rot 149 2.38e+01 1fkj d.26.1.1 38429 1q59A 172 2.46e+01 f.1.4.1 95881 1ggzA 148 2.56e+01 a.39.1.5 70176 1sseB 86 2.59e+01 1g9uA 454 2.66e+01 c.10.2.6 65172 3proD 166 2.74e+01 3proC d.52.1.1,d.52.1.1 38814,38815 1c96A 753 2.81e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1c7jA 489 2.81e+01 2bce c.69.1.1 34631 1q2hA 69 2.84e+01 a.34.4.1 104498 1fxzA 476 2.85e+01 b.82.1.2,b.82.1.2 65059,65060 1ufiA 64 3.01e+01 a.30.4.1 99336 2cfxA 144 3.02e+01 1o7fA 469 3.08e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1tzyA 129 3.13e+01 a.22.1.1 107530 1ky3A 182 3.16e+01 c.37.1.8 73193 1hq3A 129 3.20e+01 1aoiC a.22.1.1 16434 1nrlA 316 3.30e+01 a.123.1.1 92091 1pdgA 109 3.52e+01 1pdgA g.17.1.1 44748 2a3qA 170 3.53e+01 1okrA 123 3.60e+01 a.4.5.39 93269 1kr4A 125 3.70e+01 d.58.5.2 72889 1qe3A 489 3.72e+01 2bce c.69.1.1 34630 1vcbC 160 3.74e+01 1vcbC b.3.3.1 22535 1nzeA 149 3.78e+01 a.24.18.1 92374 1paqA 189 3.79e+01 a.118.1.14 94413 1my5A 114 3.81e+01 b.1.18.1 79673 1f1sA 814 3.92e+01 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1ztsA 139 3.96e+01 1twuA 139 3.99e+01 d.32.1.8 107413 1yewC 289 4.03e+01 1g3gA 164 4.12e+01 1g6gA b.26.1.2 23918 2axwA 134 4.12e+01 1pmnA 364 4.15e+01 d.144.1.7 94907 1my7A 114 4.20e+01 b.1.18.1 79675 1owlA 484 4.25e+01 a.99.1.1,c.28.1.1 93647,93648 1pdgC 109 4.26e+01 1pdgA g.17.1.1 44750 1rfmA 344 4.30e+01 c.122.1.1 97385 1uujA 88 4.32e+01 a.221.1.1 108046 1ji8A 111 4.37e+01 d.203.1.1 66733 1bc9 200 4.39e+01 1pbv a.118.3.1 19180 1qnf 484 4.44e+01 1qnf a.99.1.1,c.28.1.1 18777,31632 1fseA 74 4.48e+01 1fseA a.4.6.2 60000 2axpA 173 4.60e+01 1q02A 52 4.63e+01 a.5.2.1 95490 1tlgA 125 4.71e+01 1byfA d.169.1.1 42421 1etc 110 4.89e+01 1awcA a.4.5.21 16162 1byfA 125 5.10e+01 1byfA d.169.1.1 42419 1hdsA 141 5.10e+01 1abwA a.1.1.2 15378 1sd4A 126 5.16e+01 a.4.5.39 105428 1wgsA 133 5.30e+01 1r03A 182 5.47e+01 a.25.1.1 104675 1puzA 82 5.61e+01 a.218.1.1 104320 1eg2A 319 5.68e+01 1eg2A c.66.1.11 34249 1bmbA 123 5.76e+01 1griA d.93.1.1 40466 1q2lA 939 5.95e+01 1vq0A 302 5.97e+01 1nw8A 319 6.23e+01 c.66.1.11 86292 1kxoA 184 6.50e+01 b.60.1.1 84475 1bftA 101 6.59e+01 1a3qA b.1.18.1 21934 1jvpP 298 6.70e+01 d.144.1.7 67371 1jyrA 96 6.74e+01 d.93.1.1 71969 1nlwA 80 6.80e+01 a.38.1.1 80633 1wxcB 134 7.09e+01 1uiiA 83 7.22e+01 h.1.28.1 107864 2b3wA 168 7.27e+01 2c5kT 95 7.33e+01 1gz8A 299 7.41e+01 d.144.1.7 83405 1hcl 298 7.65e+01 1hcl d.144.1.7 41593 1thtA 305 7.67e+01 1thtA c.69.1.13 34711 2cohA 202 7.91e+01 1a93A 34 7.93e+01 1a93A h.1.3.1 45543 2db9A 149 8.04e+01 1dwkA 156 8.21e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1jykA 254 8.21e+01 c.68.1.13 67458 1yuiA 54 8.24e+01 1yuiA g.37.1.1 45073 1tzeE 98 8.31e+01 1griA d.93.1.1 40468 1dw9A 156 8.32e+01 1dw9A a.35.1.4,d.72.1.1 17065,39596 1pu1A 94 8.49e+01 d.266.1.1 104307 1dd5A 185 8.61e+01 1dd5A d.67.3.1 39564 1s4kA 120 8.62e+01 a.35.1.6 105254 1p1cA 199 8.69e+01 c.66.1.16 87669 1zfpE 98 8.69e+01 1griA d.93.1.1 40465 1jbgA 109 8.85e+01 a.6.1.3 66480 1fiqB 350 8.86e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1tzaA 134 8.95e+01 b.1.23.1 107468