Best Alignments for T0348

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2ct7A/T0348-2ct7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ct7A/T0348-2ct7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5765e-012.36e-04
1vqoZ/T0348-1vqoZ-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vqoZ/T0348-1vqoZ-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2215e-016.52e-05
1vk6A/T0348-1vk6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vk6A/T0348-1vk6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.4537e-011.23e-05 d.113.1.4
d.113.1.4
1rlyA/T0348-1rlyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rlyA/T0348-1rlyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6762e-015.87e-02 g.41.3.1
1vckA/T0348-1vckA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vckA/T0348-1vckA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1163e+001.69e-04
1vd4A/T0348-1vd4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vd4A/T0348-1vd4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2144e+006.60e-03
1odhA/T0348-1odhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1odhA/T0348-1odhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3989e+002.70e-02 d.239.1.1
1ee8A/T0348-1ee8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ee8A/T0348-1ee8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0342e+001.25e-02 1ee8A a.156.1.2
b.113.1.1
g.39.1.8
1ur6B/T0348-1ur6B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ur6B/T0348-1ur6B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2365e+007.69e+00 g.44.1.1
1d0qA/T0348-1d0qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1d0qA/T0348-1d0qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1288e+004.69e-02 1d0qA g.41.3.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001