# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ct7A 86 3.36e-01 1s72Z 73 3.85e-01 g.41.8.1 105345 1vqoZ 83 3.98e-01 1vk6A 269 1.19e+00 d.113.1.4,d.113.1.4 100851,100852 1dl6A 58 1.30e+00 1dl6A g.41.3.1 45207 1rlyA 60 1.33e+00 g.41.3.1 104988 1vckA 115 1.50e+00 1wd2A 60 1.61e+00 g.44.1.1 109232 1odhA 174 1.64e+00 d.239.1.1 86850 1jm1A 204 1.79e+00 b.33.1.1 71745 1kmtA 141 1.96e+00 b.1.18.8 77442 1y9wA 140 2.13e+00 1fsoA 139 2.20e+00 1rhoA b.1.18.8 60007 1wrvA 308 2.64e+00 1w9aA 147 2.88e+00 1xxoA 147 2.88e+00 1jj2Y 73 3.35e+00 1ffkW g.41.8.1 63110 1n9dA 199 3.39e+00 a.26.1.1 85464 1wpkA 146 4.06e+00 1mswD 883 4.22e+00 e.8.1.3 79427 1zgwA 139 4.29e+00 1deoA 233 4.83e+00 1deoA c.23.10.4 31345 1neeA 138 5.19e+00 d.241.1.1,g.59.1.1 91841,91842 2awpA 198 5.26e+00 2fqpA 97 5.28e+00 1qxfA 66 5.28e+00 g.41.8.4 96527 1k7cA 233 5.37e+00 c.23.10.4 68267 1nykA 165 6.34e+00 b.33.1.1 86408 1d0qA 103 6.36e+00 1d0qA g.41.3.2 45208 1x75A 132 6.90e+00 1s9rA 410 6.92e+00 d.126.1.4 98758 1ur6B 52 7.09e+00 g.44.1.1 99812 1vd4A 62 7.91e+00 1ee8A 266 8.31e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1adn 92 9.56e+00 1adn g.48.1.1 45348 1qwtA 255 9.57e+00 b.26.1.3 96501 2btfA 375 9.62e+00 1yagA c.55.1.1,c.55.1.1 33429,33430 1bc8C 93 1.07e+01 1awcA a.4.5.21 16168 1wxiA 275 1.15e+01 1l1oC 181 1.29e+01 b.40.4.3 73480 1hvyA 288 1.30e+01 1bkpA d.117.1.1 41049 1k7hA 476 1.35e+01 c.76.1.1 72101 1mr1C 99 1.36e+01 d.217.1.2 79420 1yk4A 52 1.47e+01 1x31D 99 1.52e+01 1inp 400 1.57e+01 1inp e.7.1.1 42972 1hyeA 313 1.64e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1vhqA 232 1.68e+01 c.23.16.2 100696 2aq6A 147 1.71e+01 1upiA 225 1.75e+01 b.82.1.1 99757 1i50L 70 1.78e+01 g.41.9.2 61766 1ww8A 439 1.79e+01 1ifqA 138 1.84e+01 1ifqA d.110.4.1 62350 2sak 121 1.89e+01 2sak d.15.5.1 37711 1ypvA 313 1.90e+01 1dxgA 36 1.92e+01 1dxgA g.41.5.2 45247 1ab4 477 1.96e+01 1ab4 e.11.1.1 43251 1oahA 519 2.10e+01 a.138.1.3 86736 1vor2 58 2.13e+01 1qlaB 239 2.13e+01 1qlaB a.1.2.1,d.15.4.2 15679,37707 2b5iD 217 2.20e+01 1v87A 114 2.20e+01 g.44.1.1 108422 1r5mA 425 2.20e+01 1z92B 219 2.29e+01 1dl0A 37 2.29e+01 1dl0A g.3.6.2 44112 1ptq 50 2.32e+01 1ptq g.49.1.1 45349 1wjvA 79 2.33e+01 1k0mA 241 2.35e+01 a.45.1.1,c.47.1.5 67949,67950 1z6uA 150 2.42e+01 1wijA 140 2.42e+01 1hyuA 521 2.44e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1vqoC 246 2.46e+01 1u8bA 133 2.47e+01 1iro 54 2.53e+01 1rb9 g.41.5.1 45223 1exkA 79 2.53e+01 1exkA g.54.1.1 45384 1iyeA 309 2.55e+01 e.17.1.1 83786 1gvjA 146 2.65e+01 a.4.5.21 90525 1uh4A 637 2.71e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1jj2C 246 2.72e+01 1ffkC c.22.1.1 63087 1s72C 246 2.74e+01 c.22.1.1 105321 1ji1A 637 2.74e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1f4lA 551 2.74e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 1w8kA 447 2.74e+01 1pfvA 551 2.81e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1u24A 337 2.82e+01 1yl35 60 2.82e+01 2bx9A 53 2.83e+01 1qlnA 883 2.85e+01 1cezA e.8.1.3 43111 1t0bA 252 3.02e+01 c.23.16.6 106199 1qz5A 375 3.02e+01 c.55.1.1,c.55.1.1 96614,96615 1twfL 70 3.04e+01 1wfeA 86 3.08e+01 1dgaA 375 3.11e+01 1yagA 1zzpA 130 3.12e+01 1rb9 53 3.18e+01 1rb9 g.41.5.1 45214 1sp1 29 3.25e+01 g.37.1.1 45051 1zin 217 3.26e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1d4xA 375 3.27e+01 1yagA c.55.1.1,c.55.1.1 59107,59108 1ogdA 131 3.28e+01 c.133.1.1 92893 1xakA 83 3.34e+01 1xi7A 61 3.36e+01 1n6zA 105 3.39e+01 d.263.1.1 85369 1c3hA 137 3.39e+01 b.22.1.1 90405 1weoA 93 3.39e+01 1q68B 29 3.44e+01 j.108.1.1 95963 1e53A 59 3.45e+01 1e53A g.49.1.2 45356 1utyA 187 3.50e+01 b.147.1.1 108036 1zip 217 3.53e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1plq 258 3.58e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1j6zA 376 3.60e+01 1yagA c.55.1.1,c.55.1.1 62667,62668 1kkeA 210 3.61e+01 b.21.1.2,b.83.1.2 68669,68670 1i1kA 309 3.65e+01 1daaA e.17.1.1 61533 1fp0A 88 3.69e+01 1fp0A g.50.1.2 45361 2avuE 192 3.77e+01 1rfs 139 3.78e+01 1rfs b.33.1.1 24434 1zyoA 191 3.82e+01 1mea 28 3.83e+01 g.41.1.1 45176 1twfI 122 3.89e+01 1hw5A 210 3.90e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1qtwA 285 3.94e+01 1qumA c.1.15.1 29392 2bwfA 77 3.95e+01 2aaiB 262 3.99e+01 1abrB b.42.2.1,b.42.2.1 25561,25562 2c43A 323 4.04e+01 2cx1A 187 4.10e+01 1m2tB 263 4.15e+01 b.42.2.1,b.42.2.1 84762,84763 2g8yA 385 4.17e+01 1jgsA 138 4.30e+01 a.4.5.28 66683 1kyqA 274 4.34e+01 c.2.1.11,e.37.1.1 73281,73282 1l8dA 112 4.37e+01 h.4.12.1 73687 1wuaA 375 4.41e+01 1guiA 155 4.52e+01 b.18.1.14 76351 3daaA 277 4.52e+01 1daaA e.17.1.1 43272 1c28A 135 4.53e+01 1c28A b.22.1.1 23857 1m22A 503 4.57e+01 c.117.1.1 78464 1k3eA 156 4.57e+01 d.198.1.1 68103 2aq4A 434 4.69e+01 1wosA 364 4.72e+01 b.44.2.1,d.250.1.1 109468,109469 1y3nA 490 4.83e+01 2bydA 323 4.84e+01 1k8kA 418 4.91e+01 c.55.1.1,c.55.1.1 68305,68306 2fxuA 375 5.04e+01 1sz6B 263 5.04e+01 1p3jA 217 5.14e+01 c.37.1.1,g.41.2.1 94022,94023 1i50I 122 5.28e+01 g.41.3.1,g.41.3.1 61762,61763 1a78A 134 5.32e+01 1c1lA b.29.1.3 24212 1gp1A 198 5.46e+01 1gp1A c.47.1.10 33059 1o12A 376 5.95e+01 b.92.1.5,c.1.9.10 80758,80759 2a20A 62 6.03e+01 7taa 478 6.03e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1vfyA 73 6.04e+01 1vfyA g.50.1.1 45357 1jofA 365 6.05e+01 b.69.10.1 71775 1wjpA 107 6.10e+01 1tz9A 367 6.17e+01 c.1.15.6 107466 1dgfA 497 6.18e+01 1cf9A e.5.1.1 42782 2au3A 407 6.19e+01 1qvbA 481 6.22e+01 1qvbA c.1.8.4 28983 1r6lA 239 6.48e+01 d.14.1.4,d.101.1.1 97153,97154 1jx4A 352 6.53e+01 d.240.1.1,e.8.1.7 90378,90379 1th8A 145 6.54e+01 d.122.1.3 106908 1ywzA 175 6.55e+01 2cklA 108 6.57e+01 1hdlA 55 6.59e+01 g.68.1.2 65808 1nxjA 183 6.63e+01 c.8.7.1 86382 1wflA 74 6.79e+01 1dvpA 220 6.91e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1u2xA 474 6.92e+01 c.72.1.3 107622 1sur 215 6.94e+01 1sur c.26.2.2 31620 1p6pA 125 6.94e+01 b.60.1.2 87839 1rdg 53 6.98e+01 1rb9 g.41.5.1 45221 1gvzA 237 7.08e+01 b.47.1.2 76360 1lm5A 214 7.16e+01 d.211.2.1 74029 1i6xA 209 7.19e+01 a.4.5.4,b.82.3.2 83673,83674 2frnA 278 7.24e+01 1vetA 124 7.24e+01 d.110.7.1 108553 2aheA 267 7.25e+01 1bq9A 54 7.31e+01 1rb9 g.41.5.1 45238 1zkkA 167 7.38e+01 1zxzA 197 7.39e+01 1ldg 316 7.39e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1g8kB 133 7.40e+01 1g8jB b.33.1.1 24435 1xpa 122 7.42e+01 1xpa a.6.1.2,g.39.1.5 16308,45151 1t2dA 322 7.43e+01 c.2.1.5,d.162.1.1 99084,99085 1afp 51 7.44e+01 1afp g.26.1.1 44947 1zd9A 188 7.54e+01 1fjgS 93 7.56e+01 1qkfA d.28.1.1 38451 1lv3A 68 7.72e+01 g.39.1.9 78231 1vq0A 302 7.78e+01 1q35A 320 8.05e+01 c.94.1.1 95661 1rutX 188 8.24e+01 2cy5A 140 8.26e+01 1brfA 53 8.37e+01 1rb9 g.41.5.1 45236 1hn6A 110 8.43e+01 g.61.1.1 76721 1g8pA 350 8.53e+01 1g8pA c.37.1.20 60376 1theA 260 8.61e+01 1theB d.3.1.1 37056 1q33A 292 8.61e+01 d.113.1.1 95657 1u69A 163 8.73e+01 d.32.1.7 107699 2bcoA 350 8.77e+01 1kkcA 221 8.84e+01 a.2.11.1,d.44.1.1 68660,68661 1fh6A 282 8.92e+01 1fh6A 1rgxA 114 8.99e+01 g.77.1.1 104932