# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bc8C 93 9.80e-01 1awcA a.4.5.21 16168 1wggA 96 1.10e+00 2gatA 66 1.66e+00 1gatA g.39.1.1 45102 2a1rA 430 1.69e+00 1wd2A 60 2.17e+00 g.44.1.1 109232 2cklA 108 2.26e+00 2a8jA 420 2.29e+00 2a8mA 420 3.49e+00 1rlyA 60 3.97e+00 g.41.3.1 104988 1n9dA 199 4.05e+00 a.26.1.1 85464 2ct7A 86 4.57e+00 1ur6B 52 4.74e+00 g.44.1.1 99812 1mr1C 99 4.87e+00 d.217.1.2 79420 1tr9A 341 5.07e+00 1dl6A 58 6.28e+00 1dl6A g.41.3.1 45207 1wjvA 79 6.31e+00 1ypvA 313 6.31e+00 1r61A 207 6.38e+00 c.8.8.1 97138 1ydlA 79 6.89e+00 2c30A 321 7.51e+00 1lm5A 214 7.60e+00 d.211.2.1 74029 1so2A 420 7.87e+00 a.211.1.2 98936 1s7bA 110 8.21e+00 f.39.1.1 98634 1hm9A 468 8.42e+00 b.81.1.4,c.68.1.5 65866,65867 1lv3A 68 8.45e+00 g.39.1.9 78231 1pm6A 72 8.86e+00 a.6.1.7 94894 1fiqB 350 9.13e+00 1fiqB d.87.2.1,d.145.1.3 40229,41760 1hn6A 110 9.82e+00 g.61.1.1 76721 1guqA 348 1.02e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 1e53A 59 1.04e+01 1e53A g.49.1.2 45356 1woyA 500 1.06e+01 1hcnA 92 1.07e+01 1hcnA g.17.1.4 44809 2a20A 62 1.13e+01 1yb3A 175 1.18e+01 1vq0A 302 1.27e+01 1ka8A 100 1.32e+01 a.4.5.20 72241 2conA 79 1.33e+01 1hvyA 288 1.38e+01 1bkpA d.117.1.1 41049 1vckA 115 1.43e+01 1w0uA 55 1.49e+01 1a8h 500 1.49e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 2axiA 115 1.50e+01 1xd3A 230 1.53e+01 1v87A 114 1.55e+01 g.44.1.1 108422 1llmC 88 1.57e+01 g.37.1.1,g.37.1.1 91059,91060 1xccA 220 1.61e+01 1x31D 99 1.66e+01 1uch 230 1.67e+01 1uch d.3.1.6 37129 1owxA 121 1.70e+01 d.58.7.1 87494 1hyuA 521 1.73e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1d0qA 103 1.73e+01 1d0qA g.41.3.2 45208 1vk6A 269 1.76e+01 d.113.1.4,d.113.1.4 100851,100852 1rfs 139 1.88e+01 1rfs b.33.1.1 24434 1y88A 199 2.01e+01 1vd4A 62 2.10e+01 1zv1A 65 2.12e+01 2bwfA 77 2.14e+01 1z60A 59 2.17e+01 1vggA 161 2.25e+01 1ejxA 100 2.39e+01 d.8.1.1 83182 1oapA 109 2.44e+01 d.79.7.1 92706 1m1qA 91 2.63e+01 a.138.1.3 74419 1z1zA 131 2.63e+01 1qxfA 66 2.69e+01 g.41.8.4 96527 2fqpA 97 2.76e+01 2c1xA 456 2.77e+01 1yc5A 246 2.78e+01 1tw6A 133 2.81e+01 2bx9A 53 2.89e+01 1qqqA 264 2.93e+01 1bkpA d.117.1.1 40931 1q5hA 147 2.96e+01 b.85.4.1 95893 1w8kA 447 2.96e+01 1fl2A 310 3.13e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1tzyB 126 3.20e+01 a.22.1.1 107531 1evfA 264 3.26e+01 1bkpA d.117.1.1 40932 1s2dA 167 3.27e+01 c.23.14.1 98377 1jb0F 164 3.31e+01 1jb0F f.23.16.1 62825 2g8mA 264 3.34e+01 1yviA 149 3.44e+01 1cl4A 60 3.52e+01 1cl4A g.40.1.1 45171 1g73C 121 3.58e+01 1g3fA g.52.1.1 45375 1ycdA 243 3.59e+01 1ku1A 230 3.60e+01 a.118.3.1 72996 1ijgA 309 3.73e+01 1fouA e.27.1.1 62493 2g8oA 264 3.81e+01 1yopA 83 3.82e+01 1hq3B 126 3.84e+01 1aoiD a.22.1.1 16444 1t4fM 110 3.90e+01 1y5mA 276 3.92e+01 1e0eA 55 3.95e+01 1wjcA a.4.10.1 59147 1cl8A 276 4.00e+01 1ckqA c.52.1.1 33230 1yk4A 52 4.03e+01 2boqA 331 4.09e+01 1vziA 126 4.32e+01 b.1.13.1,g.41.5.2 108967,108968 3pmgA 561 4.39e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1ee8A 266 4.47e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1lpbA 95 4.48e+01 1lpbA g.3.10.1,g.3.10.1 44189,44190 1vqoZ 83 4.49e+01 1hw5A 210 4.52e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1ww9A 392 4.64e+01 1nal1 297 4.75e+01 1nal3 1fsoA 139 4.76e+01 1rhoA b.1.18.8 60007 1d02A 202 5.10e+01 1d02A c.52.1.8 33313 1dl0A 37 5.14e+01 1dl0A g.3.6.2 44112 1i76A 163 5.25e+01 1hfc d.92.1.11 61877 1kmtA 141 5.27e+01 b.1.18.8 77442 1xseA 295 5.33e+01 1jgsA 138 5.36e+01 a.4.5.28 66683 1ywzA 175 5.44e+01 2ftrA 108 5.47e+01 1hl2A 297 5.51e+01 c.1.10.1 83581 2bmoA 447 5.58e+01 1uliA 460 5.59e+01 b.33.1.2,d.129.3.3 107921,107922 2aw2B 108 5.71e+01 1whuA 104 5.89e+01 1nkzA 53 5.95e+01 f.3.1.1 80611 830cA 168 5.97e+01 1ck7A d.92.1.11 40400 1u35D 126 6.01e+01 1moxC 50 6.16e+01 g.3.11.1 91380 1prxA 224 6.35e+01 1prxA c.47.1.10 33076 1dv1A 449 6.54e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1oxnA 140 6.55e+01 g.52.1.1 93704 1l7bA 92 6.62e+01 c.15.1.2 91053 1lkoA 191 6.83e+01 a.25.1.1,g.41.5.1 78063,78064 2fbhA 146 6.91e+01 1jx2B 315 6.93e+01 c.37.1.8 67404 2fclA 169 6.98e+01 1xu6A 80 7.16e+01 1rb9 53 7.17e+01 1rb9 g.41.5.1 45214 1zy1B 197 7.31e+01 1ayoA 130 7.31e+01 1ayoA b.2.4.1 22431 1josA 128 7.31e+01 d.52.7.1 84191 1odhA 174 7.41e+01 d.239.1.1 86850 1iro 54 7.47e+01 1rb9 g.41.5.1 45223 2ethA 154 7.53e+01 1wfeA 86 7.57e+01 1wer 334 7.58e+01 1wer a.116.1.2 19108 1wjpA 107 7.64e+01 2ct5A 73 7.73e+01 2avuE 192 7.79e+01 1d4xA 375 7.89e+01 1yagA c.55.1.1,c.55.1.1 59107,59108 1je8A 82 7.90e+01 a.4.6.2 77108 1pytA 94 7.91e+01 1pytA d.58.3.1 39064 1ryt 190 7.91e+01 1ryt a.25.1.1,g.41.5.1 16646,45245 1qpaA 345 8.21e+01 1arv a.93.1.1 18585 1a4pA 96 8.28e+01 1b4cA a.39.1.2 17176 1b71A 191 8.47e+01 1ryt a.25.1.1,g.41.5.1 16647,45246 1z6uA 150 8.49e+01 1yhnB 65 8.59e+01 2a8lA 420 8.62e+01 1t1jA 125 8.63e+01 c.137.1.1 106249 1ywsA 82 8.71e+01 1q35A 320 8.92e+01 c.94.1.1 95661