# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fo1D 85 2.65e-01 2fxaA 207 6.88e-01 1ehyA 294 8.89e-01 1ehyA c.69.1.11 34693 1t6sA 162 1.29e+00 1svfB 38 1.92e+00 1svfB h.3.2.1 45764 2cqnA 77 1.97e+00 6ldh 330 2.31e+00 3ldh c.2.1.5,d.162.1.1 30161,42128 2fbwC 141 2.53e+00 1qrvA 73 3.38e+00 1cktA a.21.1.1 16425 2ethA 154 3.65e+00 1u5tA 233 3.65e+00 a.4.5.54,a.4.5.54 107684,107685 1jf8A 131 4.85e+00 c.44.1.1 66621 1o8vA 134 5.14e+00 b.60.1.2 86680 1tmy 120 5.48e+00 1dbwA c.23.1.1 31083 1srrA 124 6.17e+00 1dz3A c.23.1.1 31110 1u0sY 118 6.59e+00 c.23.1.1 107566 1mb3A 124 7.01e+00 c.23.1.1 78907 1msc 129 7.14e+00 1msc d.85.1.1 40039 2cz1B 212 8.12e+00 1w8iA 156 8.71e+00 1ccwA 137 9.73e+00 1be1 c.23.6.1 31238 2frnA 278 1.23e+01 1mvoA 136 1.26e+01 c.23.1.1 79513 1h54A 754 1.29e+01 a.102.1.4,b.30.5.3 60634,60635 1te0A 318 1.37e+01 1vk9A 151 1.47e+01 c.139.1.1 108640 1qp6A 35 1.49e+01 1qp6A k.16.1.1 46443 1v54E 109 1.64e+01 a.118.11.1 100326 2d28C 149 1.67e+01 1yduA 170 1.78e+01 1cnzA 363 1.83e+01 1cnzA c.77.1.1 35061 1bx7 55 1.96e+01 1bx7 g.3.15.1 44355 1mzbA 136 1.98e+01 a.4.5.42 91497 1m6kA 251 2.07e+01 e.3.1.1 78695 1wovA 250 2.28e+01 1m5q1 130 2.40e+01 1eumA 165 2.46e+01 1eumA a.25.1.1 59507 1oqcA 125 2.75e+01 a.24.15.1 87264 2btiA 63 2.78e+01 1j5pA 253 2.79e+01 d.81.1.3,c.2.1.3 71577,83092 1w2wA 211 2.82e+01 c.124.1.5 109130 1r7jA 95 2.85e+01 a.4.5.49 104836 1tqzA 133 2.86e+01 2dp5A 332 3.21e+01 1vqoE 178 3.55e+01 1ikoP 178 3.64e+01 b.6.1.5 71243 1m6pA 152 3.88e+01 1m6pA b.64.1.1 27519 1vp8A 201 3.92e+01 1rsy 152 4.05e+01 1rsy b.7.1.2 23192 1wjvA 79 4.06e+01 1cf4B 44 4.09e+01 1cf4B 1yukB 120 4.45e+01 1z5zA 271 4.81e+01 1vqoH 171 4.85e+01 1sc3A 178 4.95e+01 c.17.1.1 105416 1o54A 277 4.99e+01 c.66.1.13 92482 1k3bB 164 5.05e+01 d.3.1.1 72015 1ysqA 193 5.05e+01 1l0lK 56 5.07e+01 f.23.15.1 84497 2fwuA 157 5.13e+01 1zanL 214 5.20e+01 1u9lA 70 5.21e+01 a.60.4.2 107751 1vzwA 244 5.26e+01 1zybA 232 5.36e+01 2fcr 173 5.37e+01 1rcf c.23.5.1 31151 2coeA 120 5.54e+01 1pfsA 78 5.70e+01 1pfsA b.40.4.7 25391 1v60A 123 5.79e+01 1pm3A 78 5.79e+01 b.41.1.2 94889 1v71A 323 5.80e+01 1qtxB 21 5.92e+01 1xdnA 277 5.93e+01 1qqp3 220 5.93e+01 1qqp3 1ualA 274 6.04e+01 c.116.1.4 88383 1x3cA 73 6.19e+01 1twfH 146 6.21e+01 2bf5A 98 6.28e+01 1wwuA 99 6.36e+01 1c75A 71 6.41e+01 451c a.3.1.1 15796 2d13A 227 6.62e+01 2fl4A 149 6.70e+01 1vioA 243 6.90e+01 d.265.1.3,d.66.1.5 100762,100763 1ghhA 81 6.94e+01 1ghhA d.57.1.1 38940 1pb1A 416 7.02e+01 c.77.1.1 88014 1ntyA 311 7.07e+01 a.87.1.1,b.55.1.1 103873,103874 1d7mA 101 7.11e+01 1d7mA h.1.10.1 45628 2fp4B 395 7.19e+01 2f5gA 133 7.25e+01 2fggA 101 7.28e+01 2a6hC 1119 7.28e+01 1kqpA 271 7.32e+01 c.26.2.1 72883 1fp0A 88 7.34e+01 1fp0A g.50.1.2 45361 1w7jB 151 7.38e+01 1s8nA 205 7.47e+01 c.23.1.1 105374 1bupA 386 7.49e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2avyM 117 7.54e+01 2b3wA 168 7.56e+01 2f23A 156 7.58e+01 2c55A 52 7.70e+01 2b7kA 200 7.80e+01 1bzg 34 7.82e+01 1bzg j.15.1.1 46166 1gs9A 165 7.82e+01 a.24.1.1 83313 1kafA 108 7.83e+01 d.199.1.1 68372 1xniA 118 7.99e+01 1yukA 103 8.08e+01 2anuA 255 8.28e+01 1vd4A 62 8.42e+01 1fjgE 162 8.59e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 2a1xA 308 8.62e+01 1kgcE 242 8.73e+01 b.1.1.1,b.1.1.2 77386,77387 2czrA 226 8.84e+01 1mv8A 436 8.96e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130