# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cg4A 152 2.69e-22 2cfxA 144 5.95e-19 1sfxA 109 2.04e-05 a.4.5.50 105505 2a61A 145 2.37e-05 1ulyA 192 8.44e-05 2fbiA 142 5.34e-04 1je8A 82 5.63e-04 a.4.6.2 77108 1ub9A 100 5.73e-04 a.4.5.28 99159 2fbhA 146 1.30e-03 1z91A 147 1.44e-03 1lj9A 144 1.97e-03 a.4.5.28 78035 2b0lA 102 2.25e-03 2g7uA 257 2.26e-03 1zljA 78 2.64e-03 1lnwA 147 4.25e-03 a.4.5.28 78104 1jhfA 202 4.59e-03 a.4.5.2,b.87.1.1 63057,63058 1mkmA 249 7.75e-03 a.4.5.33,d.110.2.2 79242,79243 1u2wA 122 7.84e-03 1r1tA 122 8.33e-03 a.4.5.5 104769 1bia 321 9.06e-03 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1xd7A 145 9.35e-03 a.4.5.55 109566 2csbA 519 3.43e-02 1on2A 142 3.73e-02 a.4.5.24,a.76.1.1 87103,87104 1hw5A 210 4.19e-02 2cgpA a.4.5.4,b.82.3.2 16098,28137 1fseA 74 5.58e-02 1fseA a.4.6.2 60000 1zarA 282 5.73e-02 1lvaA 258 6.29e-02 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1jgsA 138 7.48e-02 a.4.5.28 66683 2ethA 154 8.65e-02 1sd4A 126 9.54e-02 a.4.5.39 105428 1xmkA 79 1.16e-01 1hw1A 239 1.26e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1j75A 67 1.47e-01 a.4.5.19 62673 1in6A 334 1.91e-01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1g2hA 61 2.19e-01 1g2hA a.4.1.12 60224 1wi9A 72 2.35e-01 1p4xA 250 2.61e-01 a.4.5.28,a.4.5.28 87784,87785 1qbjA 81 2.72e-01 1qbjA a.4.5.19 16155 1y0uA 96 3.02e-01 1zybA 232 3.48e-01 2fxaA 207 3.67e-01 1in4A 334 4.60e-01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1s6lA 212 4.68e-01 2bj7A 138 5.35e-01 1qzzA 374 5.36e-01 a.4.5.29,c.66.1.12 96719,96720 1b0nA 111 5.72e-01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1r1uA 106 5.77e-01 a.4.5.5 104771 1aisB 200 7.25e-01 1aisB a.74.1.2,a.74.1.2 18384,18385 2fu4A 83 7.51e-01 1z7uA 112 7.58e-01 2fswA 107 9.27e-01 1hlvA 131 1.02e+00 a.4.1.7,a.4.1.7 65854,65855 1xn7A 78 1.05e+00 2f2eA 146 1.23e+00 2f4iA 197 1.37e+00 2aq4A 434 1.43e+00 2f06A 144 1.45e+00 1k78A 149 1.54e+00 a.4.1.5,a.4.1.5 68255,68256 2a6cA 83 1.85e+00 1obbA 480 1.92e+00 c.2.1.5,d.162.1.2 86760,86761 1rr7A 129 1.93e+00 a.4.1.14 105075 1mgtA 174 2.26e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 2cohA 202 2.31e+00 2g7gA 213 2.31e+00 1xgsA 295 2.55e+00 1bn5 a.4.5.25,d.127.1.1 16216,41153 1n2aA 201 2.58e+00 a.45.1.1,c.47.1.5 91553,91554 1fxxA 482 2.64e+00 1fxxA c.55.3.5 33726 1xsvA 113 2.94e+00 1d02A 202 3.07e+00 1d02A c.52.1.8 33313 1m32A 366 3.09e+00 c.67.1.3 78508 5nul 138 3.55e+00 5nul c.23.5.1 31191 1t56A 216 3.74e+00 a.4.1.9,a.121.1.1 106428,106429 2exrA 524 3.98e+00 1ixcA 294 4.01e+00 a.4.5.37,c.94.1.1 83764,83765 1bm9A 122 4.17e+00 1bm9A a.4.5.7 16116 1zk8A 183 4.38e+00 1ufmA 84 4.45e+00 a.4.5.47 107816 1u8bA 133 4.52e+00 1or7A 194 4.72e+00 a.4.13.2,a.177.1.1 87332,87333 1vfgA 390 5.88e+00 a.173.1.1,d.218.1.4 108570,108571 1utxA 66 6.42e+00 a.35.1.3 108034 1t6sA 162 6.46e+00 1xt8A 292 6.67e+00 1pufB 73 6.81e+00 a.4.1.1 95132 1jggA 60 6.88e+00 2hddA a.4.1.1 62950 1js3A 486 7.11e+00 c.67.1.6 67215 1w23A 360 7.34e+00 1lkdA 297 7.80e+00 d.32.1.3,d.32.1.3 78059,78060 1kqfB 294 8.22e+00 d.58.1.5,f.23.22.1 75900,75901 2tct 207 8.36e+00 2tct a.4.1.9,a.121.1.1 16063,19240 1kw3B 292 8.41e+00 d.32.1.3,d.32.1.3 77549,77550 1tuzA 118 8.44e+00 1kblA 873 8.46e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1fgyA 127 8.51e+00 1faoA b.55.1.1 26976 2a1iA 146 9.53e+00 1g8aA 227 9.69e+00 c.66.1.3 90506 1tbxA 99 9.82e+00 a.4.5.48 106748 1kxoA 184 1.01e+01 b.60.1.1 84475 2b06A 155 1.03e+01 1yqfA 203 1.03e+01 1t95A 240 1.04e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1p0yA 444 1.08e+01 a.166.1.1,b.85.7.3 87654,87655 2f46A 156 1.10e+01 1yw3A 208 1.12e+01 1r69 69 1.19e+01 1r69 a.35.1.2 17028 1wwzA 159 1.22e+01 1t6cA 315 1.24e+01 c.55.1.8,c.55.1.8 106558,106559 1r9wA 145 1.27e+01 d.89.1.2 97264 1r7jA 95 1.28e+01 a.4.5.49 104836 1uwwA 191 1.34e+01 b.18.1.23 108079 2ao9A 155 1.34e+01 2h21A 440 1.37e+01 1qd1A 325 1.38e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1chd 203 1.38e+01 1chd c.40.1.1 32478 1uz3A 102 1.42e+01 1azo 232 1.47e+01 1azo c.52.1.14 33329 1sc6A 404 1.48e+01 1vmbA 140 1.55e+01 1jr7A 311 1.56e+01 b.82.2.3 63255 2b5aA 77 1.58e+01 1z1dA 103 1.59e+01 2c6qA 351 1.60e+01 1adr 76 1.62e+01 1r69 a.35.1.2 17042 1heiA 451 1.62e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 2fsxA 148 1.65e+01 1uj6A 227 1.69e+01 c.124.1.4,d.58.40.1 107898,107899 1d5yA 292 1.70e+01 1d5yA a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1k4nA 192 1.71e+01 d.32.1.5 72059 1bs0A 384 1.75e+01 1bs0A c.67.1.4 34490 2f1fA 164 1.78e+01 1fpzA 212 1.87e+01 1fpzA c.45.1.1 59976 1jhgA 101 1.95e+01 1jhgA a.4.12.1 19009 1pu6A 218 2.01e+01 a.96.1.5 95123 2bnmA 198 2.03e+01 1gvdA 52 2.04e+01 a.4.1.3 83338 2c0rA 362 2.05e+01 1xviA 275 2.07e+01 1txuA 273 2.07e+01 a.222.1.1 107439 1lfpA 249 2.10e+01 e.39.1.1 73885 2c9wA 169 2.10e+01 1mzbA 136 2.18e+01 a.4.5.42 91497 1m6sA 347 2.20e+01 c.67.1.1 78701 1sw5A 275 2.21e+01 c.94.1.1 106069 1wa8B 95 2.22e+01 1rzsA 61 2.32e+01 a.35.1.2 105139 1kjnA 157 2.32e+01 c.115.1.1 72614 1sw5B 275 2.35e+01 c.94.1.1 106070 1b9mA 265 2.36e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1jixA 351 2.37e+01 1c3jA c.87.1.1 63081 1jnyA 435 2.40e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1or0B 528 2.48e+01 1svmA 377 2.48e+01 1z0xA 220 2.58e+01 2ae5B 528 2.60e+01 1qf5A 431 2.63e+01 1adeA c.37.1.10 32212 1zx4A 192 2.65e+01 1ne2A 200 2.76e+01 c.66.1.32 85586 1v7bA 185 2.82e+01 2guhA 214 2.84e+01 1v05A 96 2.88e+01 1yg2A 179 2.93e+01 1mai 131 3.02e+01 1mai b.55.1.1 26951 1dgnA 89 3.03e+01 1dgnA a.77.1.3 18436 1q79A 514 3.06e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1dwkA 156 3.06e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1jh6A 189 3.08e+01 d.61.1.1 66707 1jayA 212 3.30e+01 c.2.1.6 66478 1f08A 148 3.30e+01 1f08A d.89.1.2 59564 1vk1A 242 3.32e+01 d.268.1.2 108634 1wdyA 285 3.37e+01 1u5xA 140 3.37e+01 1neeA 138 3.39e+01 d.241.1.1,g.59.1.1 91841,91842 1zkoA 136 3.47e+01 1vjoA 393 3.48e+01 c.67.1.3 100827 1txoA 237 3.50e+01 1cf7B 95 3.62e+01 1cf7B a.4.5.17 16152 1hy7A 173 3.67e+01 d.92.1.11 65957 1t0tV 248 3.67e+01 d.58.4.10 106229 2g3bA 208 3.67e+01 1uekA 275 3.73e+01 d.14.1.5,d.58.26.5 88483,88484 2gtqA 867 3.78e+01 1n5nA 180 3.79e+01 d.167.1.1 85336 1mml 265 3.82e+01 1mml e.8.1.2 43015 1bl0A 129 3.82e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1yzxA 226 3.85e+01 1zirA 173 3.91e+01 1jalA 363 3.93e+01 c.37.1.8,d.15.10.2 84138,84139 1f0lA 535 3.98e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1m1hA 248 4.00e+01 b.114.1.1,d.58.42.1 78415,78416 1q90M 39 4.05e+01 f.23.25.1 96246 1b6a 478 4.05e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1iab 200 4.10e+01 1iae d.92.1.8 40312 2a10A 125 4.12e+01 1rh9A 373 4.12e+01 1x46A 150 4.28e+01 1ro0A 216 4.45e+01 d.264.1.2 97664 2mhr 118 4.56e+01 2mhr a.24.4.1 16581 1sfuA 75 4.62e+01 a.4.5.19 105503 1xzoA 174 4.64e+01 1pmzA 86 4.66e+01 a.39.1.10 104195 1vgjA 184 4.73e+01 2g0dA 409 4.74e+01 1ddgA 374 4.76e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1a62 130 4.76e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 2cro 71 4.79e+01 1r69 a.35.1.2 17038 2aj0A 71 4.83e+01 1hr6A 475 4.84e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 2f94F 350 4.85e+01 2fq4A 192 4.85e+01 1po5A 476 4.86e+01 a.104.1.1 94963 1lk5A 229 4.87e+01 c.124.1.4,d.58.40.1 73960,73961 1cqmA 101 4.96e+01 1ris d.58.14.1 39321 2ex3B 264 4.97e+01 1imjA 210 5.00e+01 c.69.1.23 71246 1squA 155 5.00e+01 d.252.1.1 98971 1s9jA 341 5.06e+01 2a5hA 416 5.08e+01 1gxqA 106 5.11e+01 a.4.6.1 70721 1pzlA 237 5.12e+01 a.123.1.1 104393 1z4hA 66 5.12e+01 1o8bA 219 5.23e+01 c.124.1.4,d.58.40.1 81180,81181 1shyB 551 5.38e+01 b.69.12.1,g.16.2.1 105565,105566 1wyuA 438 5.41e+01 1o54A 277 5.44e+01 c.66.1.13 92482 1fadA 99 5.45e+01 1fadA a.77.1.2 18428 1b4bA 71 5.65e+01 1b4aA d.74.2.1 39718 2f8mA 244 5.86e+01 1umqA 81 5.94e+01 a.4.1.12 99625 1vmoA 163 5.95e+01 1vmoA b.77.1.1 27974 1qipA 183 6.00e+01 1qipA d.32.1.1 38470 1lv7A 257 6.13e+01 c.37.1.20 78232 1x1rA 178 6.37e+01 1xu9A 286 6.37e+01 1x89A 178 6.43e+01 1j8uA 325 6.45e+01 d.178.1.1 71611 2c27A 315 6.56e+01 1y7yA 74 6.58e+01 2gcfA 73 6.65e+01 1vi0A 206 6.65e+01 a.4.1.9,a.121.1.1 100720,100721 1lfkA 398 6.69e+01 a.104.1.1 77926 1acc 735 6.74e+01 1acc f.11.1.1 43828 1neq 74 6.88e+01 1neq a.35.1.2 17063 1m6pA 152 6.91e+01 1m6pA b.64.1.1 27519 1fexA 59 6.95e+01 a.4.1.3 59803 1pn2A 280 6.96e+01 d.38.1.4,d.38.1.4 94930,94931 1bywA 110 7.01e+01 1bywA d.110.3.6 40912 1stfI 98 7.02e+01 1stfI d.17.1.2 38006 1ro2A 216 7.02e+01 d.264.1.2 97665 1oo0B 110 7.04e+01 d.58.7.1 87183 1khbA 625 7.08e+01 c.91.1.1,c.109.1.1 68606,68607 1vqqA 646 7.10e+01 1b79A 119 7.17e+01 1b79A a.81.1.1 18451 1h3qA 140 7.18e+01 d.110.4.3 76652 1tz0A 114 7.31e+01 d.58.4.5 107463 1v4xB 146 7.35e+01 a.1.1.2 108364 1mvcA 240 7.54e+01 a.123.1.1 79499 1ln4A 104 7.58e+01 d.68.4.1 74043 1q0uA 219 7.65e+01 c.37.1.19 95512 1hruA 188 7.68e+01 1hruA d.115.1.1 40926 2a74A 643 7.74e+01 1vefA 395 7.76e+01 1ng0A 253 7.77e+01 b.121.4.7 80475 2g7sA 194 7.85e+01 1u8sA 192 7.96e+01 d.58.18.5,d.58.18.5 107737,107738 1r71A 178 7.98e+01 a.4.14.1 104823 1z6nA 167 8.03e+01 1gefA 123 8.06e+01 1gefA c.52.1.18 60465 2esnA 310 8.23e+01 1jvr 137 8.32e+01 1jvr a.61.1.2 18132 1jmtA 104 8.38e+01 d.58.7.3 63180 2bmjA 178 8.39e+01 1r29A 127 8.44e+01 d.42.1.1 96856 1v95A 130 8.51e+01 c.51.1.1 108435 1i5gA 144 8.62e+01 1ewxA c.47.1.10 61784 1u8zA 168 8.66e+01 1y0yA 353 8.73e+01 2eryA 172 8.75e+01 2bgcA 238 8.76e+01 1bebA 162 8.77e+01 1bebA b.60.1.1 27115 1whsA 255 8.83e+01 1ivyA c.69.1.5 34649 1jsmA 325 8.94e+01 b.19.1.2 63264 1pufA 77 8.96e+01 a.4.1.1 95131