# TARGET T0337 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0337.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1386 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.019 0.007 0.008 0.012 0.151 0.804 2 D 0.032 0.011 0.015 0.030 0.200 0.711 3 C 0.021 0.015 0.033 0.045 0.283 0.602 4 M 0.026 0.018 0.078 0.043 0.363 0.471 5 R 0.048 0.013 0.059 0.071 0.295 0.514 6 K 0.070 0.021 0.047 0.056 0.192 0.615 7 L 0.034 0.029 0.013 0.106 0.123 0.695 8 D 0.015 0.007 0.004 0.179 0.072 0.723 9 R 0.001 0.001 0.006 0.990 0.002 0.002 10 V 0.001 0.001 0.004 0.990 0.003 0.002 11 D 0.001 0.001 0.003 0.993 0.002 0.002 12 M 0.001 0.001 0.001 0.998 0.001 0.001 13 Q 0.001 0.001 0.001 0.999 0.001 0.001 14 L 0.001 0.001 0.001 0.999 0.001 0.001 15 V 0.001 0.001 0.001 0.999 0.001 0.001 16 K 0.001 0.001 0.001 0.999 0.001 0.001 17 I 0.001 0.001 0.002 0.996 0.001 0.001 18 L 0.001 0.001 0.003 0.982 0.006 0.009 19 S 0.001 0.003 0.013 0.877 0.084 0.022 20 E 0.001 0.001 0.013 0.767 0.173 0.045 21 N 0.001 0.002 0.020 0.124 0.743 0.109 22 S 0.003 0.005 0.021 0.029 0.787 0.154 23 R 0.014 0.011 0.015 0.007 0.440 0.513 24 L 0.027 0.032 0.006 0.005 0.302 0.628 25 T 0.017 0.009 0.002 0.011 0.090 0.870 26 Y 0.001 0.001 0.033 0.942 0.010 0.013 27 R 0.002 0.001 0.034 0.951 0.009 0.004 28 E 0.002 0.001 0.028 0.952 0.014 0.004 29 L 0.001 0.001 0.013 0.978 0.005 0.002 30 A 0.001 0.001 0.013 0.970 0.011 0.004 31 D 0.002 0.001 0.022 0.916 0.036 0.023 32 I 0.008 0.003 0.024 0.820 0.050 0.094 33 L 0.011 0.010 0.018 0.775 0.057 0.128 34 N 0.012 0.007 0.011 0.058 0.114 0.798 35 T 0.005 0.005 0.002 0.013 0.063 0.912 36 T 0.002 0.002 0.001 0.008 0.031 0.957 37 R 0.001 0.001 0.004 0.966 0.009 0.020 38 Q 0.001 0.001 0.005 0.991 0.002 0.001 39 R 0.001 0.001 0.005 0.990 0.003 0.001 40 I 0.001 0.001 0.001 0.996 0.001 0.001 41 A 0.001 0.001 0.001 0.998 0.001 0.001 42 R 0.001 0.001 0.001 0.998 0.001 0.001 43 R 0.001 0.001 0.001 0.996 0.001 0.002 44 I 0.001 0.001 0.001 0.999 0.001 0.001 45 D 0.001 0.001 0.001 0.999 0.001 0.001 46 K 0.001 0.001 0.001 0.999 0.001 0.001 47 L 0.001 0.001 0.002 0.996 0.002 0.001 48 K 0.001 0.001 0.004 0.991 0.003 0.001 49 K 0.001 0.001 0.003 0.991 0.004 0.001 50 L 0.001 0.001 0.004 0.951 0.022 0.023 51 G 0.003 0.001 0.003 0.031 0.143 0.819 52 I 0.102 0.021 0.009 0.011 0.188 0.669 53 I 0.613 0.027 0.018 0.010 0.171 0.160 54 R 0.705 0.009 0.014 0.012 0.150 0.109 55 K 0.704 0.003 0.010 0.013 0.137 0.133 56 F 0.774 0.008 0.004 0.008 0.094 0.112 57 T 0.856 0.005 0.002 0.006 0.052 0.078 58 I 0.896 0.007 0.002 0.004 0.033 0.057 59 I 0.742 0.010 0.003 0.009 0.075 0.160 60 P 0.405 0.028 0.007 0.018 0.139 0.404 61 D 0.108 0.019 0.014 0.030 0.317 0.510 62 I 0.005 0.002 0.513 0.323 0.132 0.025 63 D 0.003 0.001 0.689 0.208 0.090 0.009 64 K 0.005 0.001 0.777 0.135 0.075 0.007 65 L 0.038 0.014 0.327 0.206 0.265 0.150 66 G 0.081 0.009 0.132 0.076 0.303 0.399 67 Y 0.264 0.007 0.031 0.014 0.251 0.433 68 M 0.774 0.006 0.004 0.002 0.063 0.151 69 Y 0.906 0.002 0.001 0.001 0.021 0.070 70 A 0.978 0.001 0.001 0.001 0.005 0.016 71 I 0.991 0.001 0.001 0.001 0.002 0.007 72 V 0.994 0.001 0.001 0.001 0.001 0.005 73 L 0.988 0.001 0.001 0.001 0.001 0.010 74 I 0.957 0.001 0.001 0.001 0.004 0.037 75 K 0.881 0.002 0.001 0.001 0.031 0.084 76 S 0.354 0.010 0.001 0.002 0.137 0.495 77 K 0.066 0.009 0.004 0.003 0.344 0.574 78 V 0.017 0.006 0.005 0.004 0.373 0.596 79 P 0.003 0.003 0.278 0.099 0.420 0.196 80 S 0.003 0.006 0.369 0.193 0.330 0.099 81 D 0.001 0.001 0.444 0.429 0.097 0.028 82 A 0.001 0.001 0.052 0.905 0.022 0.019 83 D 0.001 0.001 0.033 0.925 0.023 0.017 84 K 0.001 0.001 0.012 0.969 0.009 0.008 85 V 0.001 0.001 0.005 0.986 0.005 0.003 86 I 0.001 0.001 0.004 0.990 0.003 0.002 87 S 0.001 0.001 0.008 0.982 0.007 0.003 88 E 0.001 0.001 0.012 0.968 0.012 0.007 89 I 0.001 0.001 0.020 0.937 0.030 0.011 90 S 0.001 0.002 0.034 0.813 0.091 0.059 91 D 0.002 0.002 0.029 0.344 0.215 0.409 92 I 0.008 0.007 0.033 0.156 0.442 0.355 93 E 0.031 0.003 0.039 0.127 0.380 0.420 94 Y 0.388 0.015 0.054 0.133 0.242 0.169 95 V 0.659 0.007 0.019 0.143 0.082 0.092 96 K 0.785 0.002 0.011 0.108 0.038 0.056 97 S 0.779 0.002 0.007 0.126 0.034 0.052 98 V 0.755 0.004 0.006 0.128 0.042 0.065 99 E 0.742 0.004 0.005 0.116 0.052 0.081 100 K 0.624 0.012 0.007 0.098 0.090 0.170 101 G 0.309 0.020 0.011 0.062 0.265 0.334 102 V 0.117 0.015 0.014 0.039 0.386 0.430 103 G 0.066 0.011 0.020 0.017 0.503 0.383 104 R 0.123 0.019 0.042 0.022 0.510 0.285 105 Y 0.262 0.015 0.030 0.022 0.400 0.271 106 N 0.407 0.005 0.011 0.009 0.295 0.273 107 I 0.907 0.005 0.001 0.003 0.036 0.048 108 I 0.980 0.001 0.001 0.002 0.006 0.011 109 V 0.993 0.001 0.001 0.002 0.002 0.003 110 R 0.989 0.001 0.001 0.005 0.002 0.004 111 L 0.969 0.001 0.001 0.007 0.005 0.018 112 L 0.834 0.003 0.001 0.006 0.036 0.120 113 L 0.294 0.007 0.005 0.004 0.200 0.491 114 P 0.059 0.006 0.011 0.009 0.419 0.496 115 K 0.014 0.014 0.013 0.015 0.376 0.568 116 D 0.008 0.011 0.006 0.039 0.201 0.735 117 I 0.001 0.001 0.048 0.922 0.020 0.010 118 K 0.001 0.001 0.026 0.964 0.008 0.002 119 D 0.001 0.001 0.031 0.953 0.013 0.003 120 A 0.001 0.001 0.007 0.984 0.004 0.004 121 E 0.001 0.001 0.002 0.994 0.002 0.002 122 N 0.001 0.001 0.004 0.989 0.004 0.003 123 L 0.001 0.001 0.002 0.989 0.003 0.005 124 I 0.001 0.001 0.001 0.993 0.002 0.003 125 S 0.001 0.001 0.002 0.994 0.002 0.002 126 E 0.001 0.001 0.003 0.993 0.003 0.002 127 F 0.001 0.001 0.006 0.980 0.007 0.007 128 L 0.001 0.001 0.013 0.972 0.010 0.004 129 Q 0.001 0.001 0.021 0.940 0.022 0.015 130 R 0.002 0.002 0.026 0.694 0.075 0.202 131 I 0.003 0.008 0.063 0.263 0.606 0.056 132 K 0.004 0.002 0.042 0.101 0.785 0.065 133 N 0.003 0.001 0.041 0.025 0.833 0.097 134 A 0.066 0.024 0.040 0.015 0.791 0.063 135 E 0.383 0.020 0.036 0.022 0.273 0.266 136 N 0.676 0.016 0.023 0.009 0.150 0.126 137 V 0.869 0.005 0.003 0.002 0.051 0.069 138 E 0.904 0.001 0.001 0.001 0.019 0.073 139 V 0.963 0.001 0.001 0.001 0.010 0.024 140 I 0.967 0.001 0.001 0.001 0.008 0.022 141 L 0.970 0.001 0.001 0.001 0.007 0.020 142 I 0.943 0.002 0.001 0.002 0.014 0.038 143 S 0.825 0.002 0.003 0.005 0.039 0.126 144 E 0.748 0.002 0.004 0.010 0.071 0.165 145 V 0.734 0.005 0.007 0.018 0.084 0.152 146 R 0.776 0.010 0.006 0.033 0.062 0.114 147 K 0.715 0.008 0.010 0.048 0.086 0.133 148 F 0.522 0.008 0.017 0.062 0.131 0.260 149 E 0.253 0.013 0.019 0.094 0.156 0.466 150 I 0.130 0.019 0.009 0.050 0.130 0.661 151 I 0.040 0.007 0.002 0.011 0.077 0.862