Best Alignments for T0330

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1jud/T0330-1jud-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jud/T0330-1jud-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2700e-282.46e-90 1qq5A c.108.1.1
2fdrA/T0330-2fdrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fdrA/T0330-2fdrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0014e-245.81e-108
2ah5A/T0330-2ah5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ah5A/T0330-2ah5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.6657e-241.04e-107
1te2A/T0330-1te2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1te2A/T0330-1te2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5528e-233.14e-104 c.108.1.6
2gfhA/T0330-2gfhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfhA/T0330-2gfhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5776e-238.06e-100
1x42A/T0330-1x42A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x42A/T0330-1x42A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7136e-212.46e-95
1rqlA/T0330-1rqlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rqlA/T0330-1rqlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3023e-202.13e-92 c.108.1.3
2go7A/T0330-2go7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2go7A/T0330-2go7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1370e-201.17e-99
1swvA/T0330-1swvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1swvA/T0330-1swvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5182e-201.21e-86
2fi1A/T0330-2fi1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fi1A/T0330-2fi1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3329e-186.44e-85

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001