Best Alignments for T0330

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1s69A/T0330-1s69A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s69A/T0330-1s69A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1281e+002.01e-08 a.1.1.1
1hlvA/T0330-1hlvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hlvA/T0330-1hlvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2350e+002.98e-01 a.4.1.7
a.4.1.7
1b8zA/T0330-1b8zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b8zA/T0330-1b8zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8915e+008.20e-06 1huuA a.55.1.1
1zljA/T0330-1zljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zljA/T0330-1zljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2433e+001.86e-05
1fvkA/T0330-1fvkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fvkA/T0330-1fvkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4538e+003.04e-11 1fvkA c.47.1.13
1rkbA/T0330-1rkbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rkbA/T0330-1rkbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5445e+005.92e-04
2cg4A/T0330-2cg4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cg4A/T0330-2cg4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5863e+002.08e-07
1whzA/T0330-1whzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1whzA/T0330-1whzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7085e+003.51e-03
1ywfA/T0330-1ywfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ywfA/T0330-1ywfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5952e+008.47e-04
1g5cA/T0330-1g5cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1g5cA/T0330-1g5cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.2244e+002.28e-08 1g5cA c.53.2.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001