# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hlvA 131 1.30e-01 a.4.1.7,a.4.1.7 65854,65855 1pyaB 228 5.16e-01 1pyaB 2au5A 139 7.76e-01 1w2yA 229 9.28e-01 a.204.1.1 109140 1whvA 100 1.00e-00 1v96A 149 1.23e+00 1htwA 158 2.69e+00 c.37.1.18 71083 1s69A 124 3.09e+00 a.1.1.1 105305 1paqA 189 3.40e+00 a.118.1.14 94413 1ufwA 95 4.28e+00 d.58.7.1 99358 1upaA 573 4.47e+00 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1x3kA 152 5.13e+00 2glfA 450 5.51e+00 1z8uA 102 6.94e+00 2bsjA 133 7.11e+00 1t3qA 168 7.13e+00 a.56.1.1,d.15.4.2 106367,106368 1k3yA 221 7.29e+00 a.45.1.1,c.47.1.5 77245,77246 1xsvA 113 7.36e+00 1ugjA 141 7.43e+00 b.41.1.3 107826 1rktA 205 7.97e+00 a.4.1.9,a.121.1.1 97623,97624 1x58A 62 8.43e+00 1wkaA 147 9.60e+00 1whzA 70 1.00e+01 1kdgA 546 1.01e+01 c.3.1.2,d.16.1.1 77337,77338 2fpnA 216 1.07e+01 1v9sA 208 1.14e+01 2f4mB 61 1.25e+01 1zljA 78 1.28e+01 1r1tA 122 1.29e+01 a.4.5.5 104769 1b8zA 90 1.30e+01 1huuA a.55.1.1 17902 1z2iA 358 1.41e+01 2vhbA 146 1.57e+01 2vhbA a.1.1.2 15629 1ka8A 100 1.58e+01 a.4.5.20 72241 1sedA 117 1.62e+01 a.219.1.1 105449 1rf8B 100 1.73e+01 a.210.1.1 97371 2af6A 258 1.77e+01 2af4C 333 1.79e+01 2gfnA 209 1.80e+01 1s6cA 183 1.90e+01 a.39.1.5 98594 1t2dA 322 2.05e+01 c.2.1.5,d.162.1.1 99084,99085 1res 43 2.07e+01 1ret a.4.1.2 16023 1t1jA 125 2.10e+01 c.137.1.1 106249 1t17A 148 2.34e+01 2bxxA 134 2.40e+01 1ylqA 96 2.43e+01 1u20A 212 2.46e+01 1ui5A 215 2.49e+01 a.4.1.9,a.121.1.1 107856,107857 1zbsA 291 2.53e+01 2cfxA 144 2.58e+01 1k8kC 372 2.59e+01 b.69.4.1 68308 2f4eA 180 2.64e+01 1wm3A 72 2.67e+01 2bhoA 130 2.68e+01 1x3lA 440 2.70e+01 1pufB 73 2.80e+01 a.4.1.1 95132 1vr4A 103 2.83e+01 1x42A 232 2.91e+01 1o97C 264 2.94e+01 c.26.2.3 81232 2f1lA 187 2.98e+01 1tqhA 247 2.99e+01 c.69.1.29 107225 1zklA 353 3.05e+01 2a6cA 83 3.08e+01 1sqiA 393 3.11e+01 d.32.1.3,d.32.1.3 105914,105915 1l5aA 436 3.24e+01 c.43.1.2,c.43.1.2 75923,75924 2bnuA 203 3.29e+01 2cg4A 152 3.34e+01 1jqlB 140 3.40e+01 c.37.1.20 63234 1r69 69 3.47e+01 1r69 a.35.1.2 17028 1r1uA 106 3.52e+01 a.4.5.5 104771 1vqoN 187 3.82e+01 1p9gA 41 3.85e+01 g.3.1.1 104091 2aaxA 275 3.88e+01 1qc7A 101 3.89e+01 1qc7A a.118.14.1 18456 1je8A 82 3.93e+01 a.4.6.2 77108 1fvkA 189 3.94e+01 1fvkA c.47.1.13 90351 1x47A 98 3.96e+01 1rkbA 173 4.02e+01 1faaA 124 4.03e+01 1erv c.47.1.1 32738 1m0dA 138 4.04e+01 c.52.1.17 74354 1u9lA 70 4.06e+01 a.60.4.2 107751 1oapA 109 4.10e+01 d.79.7.1 92706 1jubA 311 4.11e+01 c.1.4.1 90908 1u0sA 86 4.17e+01 d.58.24.1 107565 1y7jA 53 4.26e+01 1m6pA 152 4.40e+01 1m6pA b.64.1.1 27519 1v32A 101 4.49e+01 a.42.1.1 100277 1zd0A 150 4.70e+01 1v7nV 163 4.82e+01 a.26.1.2 100476 2eucA 130 4.82e+01 2be4A 272 4.90e+01 2c7nA 74 4.98e+01 2auhB 59 5.02e+01 1p7tA 731 5.07e+01 c.1.13.1 94319 1e6bA 221 5.08e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1is3A 135 5.12e+01 b.29.1.3 76773 1wmmA 145 5.15e+01 2rslA 140 5.26e+01 2rslA c.53.1.1 33345 1eg2A 319 5.28e+01 1eg2A c.66.1.11 34249 1gk7A 39 5.36e+01 h.1.20.1 70212 1u7kA 131 5.36e+01 2fk4A 75 5.44e+01 1ej6D 418 5.46e+01 i.7.1.1 45970 1bia 321 5.53e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 4bcl 366 5.53e+01 4bcl b.75.1.1 27968 3tmkA 216 5.62e+01 3tmkA c.37.1.1 31920 1u55A 188 5.69e+01 d.278.1.1 107677 1x2mA 64 5.71e+01 1my6A 199 5.76e+01 a.2.11.1,d.44.1.1 85232,85233 1yh2A 175 5.80e+01 1t0yA 122 5.80e+01 d.15.1.1 99066 1uj8A 77 5.97e+01 1tc3C 51 6.00e+01 1tc3C a.4.1.2 16025 1oo0B 110 6.02e+01 d.58.7.1 87183 2audA 257 6.08e+01 1qipA 183 6.10e+01 1qipA d.32.1.1 38470 1neq 74 6.11e+01 1neq a.35.1.2 17063 1ctf 74 6.13e+01 1ctf d.45.1.1 38759 1xaoA 121 6.19e+01 1yc9A 442 6.40e+01 1wazA 46 6.49e+01 1l6xB 34 6.49e+01 k.13.1.1 73644 2g7uA 257 6.54e+01 1pb6A 212 6.57e+01 a.4.1.9,a.121.1.1 88017,88018 1ok8A 394 6.65e+01 b.1.18.4,f.10.1.1 93236,93237 1v54I 73 6.67e+01 f.23.3.1 100330 1z7lA 276 6.68e+01 1qcxA 359 6.70e+01 1qcxA b.80.1.2 28028 1x74A 360 6.99e+01 1rzfL 213 7.04e+01 b.1.1.1,b.1.1.2 98152,98153 1d8bA 81 7.11e+01 1d8bA a.60.8.1 18094 1j75A 67 7.15e+01 a.4.5.19 62673 1huxA 270 7.17e+01 1huxA c.55.1.5 61278 1y9iA 178 7.18e+01 1jggA 60 7.26e+01 2hddA a.4.1.1 62950 1zk8A 183 7.34e+01 1k2xB 143 7.35e+01 2ag4A 164 7.37e+01 1dxgA 36 7.47e+01 1dxgA g.41.5.2 45247 1mw5A 187 7.53e+01 d.259.1.1 91477 2a19A 175 7.55e+01 1rrzA 86 7.78e+01 a.7.10.1 105086 2fkiA 126 7.79e+01 1xgsA 295 7.81e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 2guhA 214 7.85e+01 1gz2A 142 7.93e+01 d.169.1.1 83392 1d5yA 292 8.20e+01 1d5yA a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1nrlA 316 8.23e+01 a.123.1.1 92091 1y2mA 716 8.24e+01 1l9vA 317 8.29e+01 d.13.2.1,d.216.1.1 73760,73761 2fa8A 105 8.34e+01 2dbbA 151 8.38e+01 1a8rA 221 8.39e+01 1a8rA d.96.1.1 40587 1dzfA 215 8.42e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 2bh1X 96 8.45e+01 1tkeA 224 8.49e+01 1jixA 351 8.67e+01 1c3jA c.87.1.1 63081 1pd3A 58 8.71e+01 a.30.3.1 94512 1wq3A 322 8.78e+01 1y8qA 346 8.99e+01