# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fs2A 151 1.37e-17 1psuA 140 1.78e-17 d.38.1.5 88285 1j1yA 136 2.25e-14 d.38.1.5 90776 1wluA 136 2.25e-14 1zkiA 133 4.84e-14 2b6eA 146 2.18e-11 1o0iA 138 2.81e-11 d.38.1.5 86532 1q4uA 151 1.64e-10 d.38.1.5 95828 1vh5A 148 5.52e-10 d.38.1.5 100642 1yliA 153 7.02e-10 1ixlA 131 8.53e-10 d.38.1.5 90717 2gvhA 288 1.30e-07 1vpmA 169 3.77e-07 1s5uA 138 1.61e-04 d.38.1.1 98573 1njkA 156 7.73e-04 d.38.1.1 85818 1yocA 147 9.99e-04 1sh8A 154 1.78e-03 d.38.1.5 105549 1u1zA 168 1.91e-03 d.38.1.6 107602 1t82A 155 3.89e-03 d.38.1.5 106639 2b3nA 159 4.22e-03 1c8uA 285 7.68e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 1z54A 132 2.11e-02 2cwzA 141 2.19e-02 2cyeA 133 3.51e-02 2av9A 147 2.66e-01 2gf6A 135 6.47e-01 1z6bA 154 7.12e-01 1iq6A 134 9.99e-01 d.38.1.4 76755 2f86B 143 1.75e+00 2f57A 317 2.98e+00 2aliA 158 3.03e+00 1y9qA 192 5.07e+00 2c30A 321 5.27e+00 1h9dA 134 5.51e+00 1cmoA b.2.5.6 60821 1su8A 636 5.76e+00 e.26.1.2 98999 1jjyA 636 5.89e+00 1jjyA 2bi0A 337 6.48e+00 1dciA 275 8.56e+00 1dciA c.14.1.3 30918 1cmoA 127 9.07e+00 1cmoA b.2.5.6 22462 1ve3A 227 1.05e+01 1vckA 115 1.07e+01 1ayyA 151 1.18e+01 1apyA d.153.1.5 42016 1tbuA 118 1.29e+01 1xg5A 279 1.29e+01 1pn2A 280 1.31e+01 d.38.1.4,d.38.1.4 94930,94931 1h09A 338 1.35e+01 b.109.1.1,c.1.8.8 83420,83421 1sjdA 368 1.40e+01 c.1.11.2,d.54.1.1 105632,105633 1ffkI 194 1.42e+01 1ffkI d.12.1.2 37494 1t3tA 1303 1.56e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1io1A 398 1.65e+01 1io1A e.32.1.1 62611 1vehA 92 1.66e+01 3proC 166 1.75e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1lo7A 141 1.76e+01 d.38.1.1 74144 1bvqA 141 1.85e+01 1bvqA d.38.1.1 38542 1rg9A 383 1.94e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1wdkC 390 2.12e+01 c.95.1.1,c.95.1.1 109258,109259 1aorA 605 2.15e+01 1b25A a.110.1.1,d.152.1.1 19042,41794 1se8A 301 2.19e+01 b.40.4.3 105448 1gwcA 230 2.22e+01 a.45.1.1,c.47.1.5 70660,70661 1wybA 392 2.24e+01 1e50A 134 2.40e+01 1cmoA b.2.5.6 59244 1f7lA 121 2.46e+01 1f7lA d.150.1.2 59666 2ffsA 157 2.52e+01 1f7tA 122 2.63e+01 1f7lA d.150.1.2 59667 1eaqA 140 2.85e+01 b.2.5.6 76144 1wjtA 103 2.98e+01 1uayA 242 3.04e+01 c.2.1.2 88390 1fo0B 112 3.05e+01 1kb5B b.1.1.1 20631 1fts 295 3.14e+01 1ng1 a.24.13.1,c.37.1.10 16968,32279 1zo2A 129 3.19e+01 1vhoA 346 3.21e+01 b.49.3.1,c.56.5.4 100694,100695 1meoA 209 3.21e+01 c.65.1.1 79035 1rf6A 427 3.45e+01 d.68.2.2 97366 1oa8A 133 3.46e+01 b.145.1.1 92698 2g1uA 155 3.71e+01 2essA 248 3.76e+01 1k1zA 78 3.79e+01 b.34.2.1 68026 1wloA 136 3.85e+01 3proD 166 3.93e+01 3proC d.52.1.1,d.52.1.1 38814,38815 1l2lA 457 4.04e+01 c.72.1.3 77656 1yq2A 1024 4.11e+01 1qttA 117 4.32e+01 1a1x b.63.1.1 27516 1ezm 301 4.36e+01 1hyt d.92.1.2 58980 1hkxA 147 4.52e+01 d.17.4.7 83567 1rbp 182 4.61e+01 1aqb b.60.1.1 27085 1dbhA 354 4.63e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1ei1A 391 4.68e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 1jlwA 219 4.70e+01 a.45.1.1,c.47.1.5 71741,71742 1wp5A 323 4.81e+01 1o6sB 105 4.85e+01 b.1.6.1 81096 1w3oA 216 5.08e+01 1q5dA 419 5.27e+01 a.104.1.1 95891 1mejA 223 5.34e+01 c.65.1.1 79029 1ihjA 98 5.39e+01 1pdr b.36.1.1 62382 1u4gA 301 5.42e+01 d.92.1.2 107670 1h30A 422 5.42e+01 b.29.1.4,b.29.1.4 76604,76605 2cu6A 103 5.73e+01 1q90R 49 5.78e+01 f.23.12.1 96248 1as8A 343 5.85e+01 1nif b.6.1.3,b.6.1.3 23074,23075 1awe 130 6.05e+01 1awe b.55.1.1 26968 1s50A 259 6.16e+01 1sgwA 214 6.22e+01 c.37.1.12 105541 1v05A 96 6.25e+01 1thx 115 6.28e+01 1thx c.47.1.1 32732 1e6wA 260 6.48e+01 1e6wA c.2.1.2 59326 1eqkA 102 6.54e+01 1eqkA d.17.1.2 37998 1as6A 343 6.56e+01 1nif b.6.1.3,b.6.1.3 23090,23091 2avdA 219 6.70e+01 1vicA 262 6.98e+01 c.68.1.13 100756 1pms 136 7.04e+01 1awe b.55.1.1 26966 2ew8A 249 7.17e+01 1qb5D 99 7.27e+01 b.40.2.1 88357 1fqtA 112 7.48e+01 1fqtA b.33.1.1 24441 1rm6A 769 7.49e+01 1eg7A 557 7.50e+01 1eg7A c.37.1.10 32241 1wgzA 510 7.82e+01 1ksr 100 7.83e+01 1qfhA b.1.18.10 21897 2brqA 97 7.93e+01 2f9lA 199 8.10e+01 1nu5A 370 8.18e+01 c.1.11.2,d.54.1.1 92183,92184 1te5A 257 8.58e+01 d.153.1.1 106795 1wgbA 159 8.65e+01 1jt8A 102 8.69e+01 b.40.4.5 63279 1tiiD 99 8.70e+01 1tiiD b.40.2.1 24965 1h1oA 183 8.83e+01 a.3.1.4,a.3.1.4 83454,83455 1m32A 366 8.86e+01 c.67.1.3 78508 1zxoA 291 8.97e+01