# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1u1zA 168 4.60e-14 d.38.1.6 107602 2b6eA 146 2.99e-13 1zkiA 133 3.53e-13 1o0iA 138 4.33e-13 d.38.1.5 86532 1vh5A 148 1.99e-12 d.38.1.5 100642 1j1yA 136 6.03e-12 d.38.1.5 90776 1wluA 136 6.39e-12 1vpmA 169 8.15e-12 1psuA 140 1.03e-11 d.38.1.5 88285 2fs2A 151 1.13e-11 1yliA 153 1.33e-11 2gvhA 288 6.25e-11 1z6bA 154 2.24e-10 1ixlA 131 4.28e-10 d.38.1.5 90717 1t82A 155 5.92e-10 d.38.1.5 106639 1q4uA 151 6.92e-10 d.38.1.5 95828 2cyeA 133 2.79e-09 1njkA 156 5.73e-09 d.38.1.1 85818 1yocA 147 1.00e-08 1sh8A 154 6.94e-08 d.38.1.5 105549 1s5uA 138 2.59e-07 d.38.1.1 98573 2b3nA 159 2.91e-07 2av9A 147 3.28e-07 1z54A 132 1.53e-06 2gf6A 135 7.56e-06 2cwzA 141 1.18e-05 1iq6A 134 4.86e-05 d.38.1.4 76755 2aliA 158 4.92e-05 1lo7A 141 1.16e-04 d.38.1.1 74144 1bvqA 141 1.31e-04 1bvqA d.38.1.1 38542 1c8uA 285 5.85e-04 1c8uA d.38.1.3,d.38.1.3 38547,38548 1tbuA 118 2.60e-03 2essA 248 9.27e-03 1mkaA 171 1.43e-02 1mkaA d.38.1.2 38543 1pn2A 280 2.75e-02 d.38.1.4,d.38.1.4 94930,94931 2bi0A 337 4.17e-02 1te5A 257 1.15e+00 d.153.1.1 106795 1r4vA 171 2.60e+00 a.197.1.1 97049 1ikpA 613 3.07e+00 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1qyaA 307 5.22e+00 d.21.1.2,d.21.1.2 104653,104654 1sdjA 310 5.58e+00 d.21.1.2,d.21.1.2 98807,98808 1yycA 174 7.34e+00 1s50A 259 8.33e+00 1nnxA 109 1.07e+01 b.40.10.1 92013 2bf6A 449 1.16e+01 1tf4A 605 1.20e+01 1tf4A a.102.1.2,b.2.2.2 18827,22393 2bm3A 166 1.46e+01 1g87A 614 1.65e+01 a.102.1.2,b.2.2.2 83275,83276 1ydwA 362 1.65e+01 1wguA 136 1.72e+01 1su8A 636 1.73e+01 e.26.1.2 98999 2b59A 187 1.79e+01 1hbq 183 2.51e+01 1aqb b.60.1.1 27078 1cbs 137 2.65e+01 1hmt b.60.1.2 27201 1yt8A 539 2.67e+01 1vrbA 342 2.69e+01 1lfwA 470 2.77e+01 c.56.5.4,d.58.19.1 77942,77943 1h30A 422 2.77e+01 b.29.1.4,b.29.1.4 76604,76605 1wurA 220 2.81e+01 1xahA 354 2.82e+01 1txqA 93 2.83e+01 1x9pA 523 3.12e+01 1wk2A 121 3.18e+01 1k4nA 192 3.21e+01 d.32.1.5 72059 1e0tA 470 3.22e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1jjyA 636 3.29e+01 1jjyA 1l5jA 865 3.31e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1icxA 155 3.40e+01 d.129.3.1 71191 1dqsA 393 3.67e+01 1dqsA e.22.1.1 43347 1q3eA 207 3.86e+01 b.82.3.2 95669 1xfrA 128 3.95e+01 1lzlA 323 3.98e+01 c.69.1.2 78306 1vgmA 378 4.00e+01 1vcaA 202 4.04e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1vehA 92 4.14e+01 1i76A 163 4.22e+01 1hfc d.92.1.11 61877 1ieaA 192 4.29e+01 1iakA b.1.1.2,d.19.1.1 21631,38205 1yy5B 513 4.30e+01 1d0iA 156 4.31e+01 2dhqA c.23.13.1 31383 1aqb 183 4.35e+01 1aqb b.60.1.1 27084 1fts 295 4.37e+01 1ng1 a.24.13.1,c.37.1.10 16968,32279 1f60A 458 4.42e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1kt6A 183 4.45e+01 b.60.1.1 84466 2f4lA 297 4.47e+01 1te0A 318 4.49e+01 2ew8A 249 4.65e+01 1fo0B 112 4.67e+01 1kb5B b.1.1.1 20631 1qr6A 584 4.84e+01 1qr6A c.2.1.7,c.58.1.3 30293,33941 4ubpC 570 4.97e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1upaA 573 5.00e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1wgzA 510 5.04e+01 1zyoA 191 5.15e+01 1gtzA 156 5.21e+01 c.23.13.1 70539 1ydlA 79 5.33e+01 1cvrA 435 5.47e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1meoA 209 5.48e+01 c.65.1.1 79035 1n67A 359 5.50e+01 b.2.3.4,b.2.3.4 85354,85355 1qi9A 556 5.54e+01 1qhbA a.111.1.2 19053 1f7lA 121 5.72e+01 1f7lA d.150.1.2 59666 1cojA 212 5.75e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2conA 79 5.82e+01 1iq4A 179 5.92e+01 1iq4A d.77.1.1 62641 2f5gA 133 5.93e+01 1u2cA 246 5.99e+01 b.1.6.2,d.272.1.1 107610,107611 1suuA 312 6.25e+01 b.68.10.1 99006 1z98A 281 6.29e+01 1pmi 440 6.32e+01 1pmi b.82.1.3 28114 1q5dA 419 6.56e+01 a.104.1.1 95891 2brqA 97 6.65e+01 1dqeA 137 6.71e+01 1dqeA a.39.2.1 17388 1w5rA 278 6.88e+01 1ak5 503 6.89e+01 1ak5 c.1.5.1 28639 2erbA 125 6.94e+01 1y0yA 353 6.96e+01 1kq3A 376 6.99e+01 e.22.1.2 68790 1dbiA 280 6.99e+01 1gci c.41.1.1 32543 1ndh 272 7.20e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1u8fO 335 7.32e+01 2azqA 311 7.40e+01 1rf6A 427 7.43e+01 d.68.2.2 97366 1l0wA 580 7.51e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1xfoA 357 7.56e+01 1at3A 247 7.62e+01 1at3A b.57.1.1 27021 1to6A 371 7.92e+01 c.141.1.1 107170 1rsgA 516 8.07e+01 1zz1A 369 8.17e+01 1fgxA 288 8.19e+01 1fgxA c.68.1.2 34508 1hr0W 71 8.20e+01 1ah9 b.40.4.5 25329 2awkA 228 8.39e+01 1u0tA 307 8.46e+01 e.52.1.1 107567 1eemA 241 8.47e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 2gujA 155 8.91e+01 1wu4A 396 8.93e+01 1b1cA 181 8.97e+01 1amoA c.23.5.2 31212