# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b6eA 146 1.62e-17 1o0iA 138 1.98e-17 d.38.1.5 86532 1zkiA 133 3.94e-17 1vh5A 148 1.78e-16 d.38.1.5 100642 1u1zA 168 3.80e-16 d.38.1.6 107602 1wluA 136 2.23e-15 1j1yA 136 2.27e-15 d.38.1.5 90776 2fs2A 151 2.92e-15 1psuA 140 2.98e-15 d.38.1.5 88285 1yliA 153 4.26e-15 1vpmA 169 1.74e-14 2gvhA 288 9.12e-14 1q4uA 151 1.30e-12 d.38.1.5 95828 1t82A 155 1.44e-12 d.38.1.5 106639 1z6bA 154 1.50e-12 1ixlA 131 3.91e-12 d.38.1.5 90717 1yocA 147 5.85e-12 1njkA 156 1.04e-11 d.38.1.1 85818 2cyeA 133 1.49e-11 1sh8A 154 5.98e-11 d.38.1.5 105549 2av9A 147 2.18e-09 1s5uA 138 2.82e-09 d.38.1.1 98573 1z54A 132 1.54e-08 2b3nA 159 3.98e-08 2gf6A 135 5.90e-07 2cwzA 141 6.90e-07 2aliA 158 2.48e-06 1iq6A 134 3.75e-06 d.38.1.4 76755 1lo7A 141 7.17e-06 d.38.1.1 74144 1bvqA 141 1.05e-05 1bvqA d.38.1.1 38542 1tbuA 118 2.57e-05 1mkaA 171 1.45e-04 1mkaA d.38.1.2 38543 2essA 248 2.28e-04 2bi0A 337 3.61e-04 1c8uA 285 4.85e-04 1c8uA d.38.1.3,d.38.1.3 38547,38548 1yycA 174 4.44e-02 1pn2A 280 3.43e-01 d.38.1.4,d.38.1.4 94930,94931 1te5A 257 1.08e+00 d.153.1.1 106795 2bm3A 166 1.50e+00 1lshA 1056 1.50e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2b59A 187 1.74e+00 1xdnA 277 2.35e+00 1sdjA 310 2.48e+00 d.21.1.2,d.21.1.2 98807,98808 2bf6A 449 2.68e+00 2b4wA 315 6.18e+00 1h3nA 878 6.29e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1xkpC 143 6.99e+00 1qyaA 307 7.95e+00 d.21.1.2,d.21.1.2 104653,104654 1tf4A 605 8.04e+00 1tf4A a.102.1.2,b.2.2.2 18827,22393 1gsoA 431 8.48e+00 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2a15A 139 9.56e+00 2f6kA 307 9.75e+00 1k4nA 192 1.01e+01 d.32.1.5 72059 1dmmA 131 1.01e+01 1opy d.17.4.3 38114 1txqA 93 1.05e+01 1nkgA 508 1.08e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1vpkA 378 1.10e+01 1ikpA 613 1.22e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1oh0A 131 1.22e+01 d.17.4.3 87004 1g24A 211 1.33e+01 1g24A d.166.1.1 42270 1cb0A 283 1.33e+01 1cb0A c.56.2.1 33790 1opy 131 1.34e+01 1opy d.17.4.3 38113 2f4lA 297 1.46e+01 1cwvA 492 1.55e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1su8A 636 1.55e+01 e.26.1.2 98999 1jjyA 636 1.56e+01 1jjyA 1cvrA 435 1.64e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1bowA 159 1.74e+01 1bowA d.60.1.1 39528 1at3A 247 1.76e+01 1at3A b.57.1.1 27021 1s7jA 262 1.78e+01 d.21.1.2 98647 1rf6A 427 1.79e+01 d.68.2.2 97366 1gmiA 136 1.83e+01 b.7.1.1 65309 1o6vA 466 1.89e+01 b.1.18.15,c.10.2.1 81099,81100 1ve4A 206 2.02e+01 1iq4A 179 2.05e+01 1iq4A d.77.1.1 62641 2sli 679 2.13e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1kt6A 183 2.23e+01 b.60.1.1 84466 1cr5A 189 2.30e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1ayl 541 2.32e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1f60A 458 2.34e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1tcvA 287 2.42e+01 1g7sA 594 2.46e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1y6hA 177 2.48e+01 2eifA 136 2.56e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1uv7A 110 2.59e+01 d.67.4.1 100040 2bwqA 129 2.64e+01 1qgvA 142 2.70e+01 1qgvA c.47.1.8 33056 1l0wA 580 2.73e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1q52A 314 2.79e+01 c.14.1.3 95846 3pmgA 561 2.92e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1s1fA 406 3.00e+01 1w9hA 427 3.03e+01 1k7hA 476 3.10e+01 c.76.1.1 72101 2f4nA 273 3.13e+01 2bc4A 211 3.14e+01 1xeuA 263 3.25e+01 1vzyA 291 3.25e+01 1r4vA 171 3.36e+01 a.197.1.1 97049 1g87A 614 3.45e+01 a.102.1.2,b.2.2.2 83275,83276 1cbs 137 3.47e+01 1hmt b.60.1.2 27201 1b06A 210 3.47e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1ztuA 341 3.62e+01 2beiA 170 3.68e+01 1aqb 183 3.69e+01 1aqb b.60.1.1 27084 2azpA 318 3.79e+01 1tu1A 148 3.79e+01 d.107.1.3 107316 1vrbA 342 3.80e+01 1qysA 106 3.86e+01 k.41.1.1 96603 1yirA 408 3.91e+01 2gr8A 99 4.10e+01 1ihjA 98 4.19e+01 1pdr b.36.1.1 62382 2mspA 126 4.34e+01 1mspA b.1.11.2 22335 1zo2A 129 4.39e+01 1ndh 272 4.40e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1o9gA 250 4.60e+01 c.66.1.29 86692 1zyoA 191 4.73e+01 1h6tA 291 4.85e+01 b.1.18.15,c.10.2.1 65686,65687 1uwdA 103 4.86e+01 1ydwA 362 5.00e+01 1b8oA 284 5.05e+01 1b8oA c.56.2.1 33762 1sx5A 244 5.31e+01 c.52.1.2 99023 1cjbA 231 5.32e+01 1qk3A c.61.1.1 34079 2d0eA 407 5.33e+01 1o0wA 252 5.42e+01 a.149.1.1,d.50.1.1 80751,80752 1fm0D 81 5.44e+01 1fmaD d.15.3.1 37642 2a9kB 223 5.47e+01 1jx2B 315 5.54e+01 c.37.1.8 67404 1ttwA 138 5.62e+01 d.198.1.1 107308 2d09A 407 5.67e+01 1bbt3 220 5.76e+01 1qqp3 1qqp3 220 5.76e+01 1qqp3 1cl8A 276 5.76e+01 1ckqA c.52.1.1 33230 1mpp 361 5.84e+01 2rmpA b.50.1.2 26856 1u69A 163 5.93e+01 d.32.1.7 107699 1nb9A 147 5.94e+01 b.43.5.1 85515 2ae5B 528 5.97e+01 1w66A 232 5.98e+01 1qzzA 374 6.13e+01 a.4.5.29,c.66.1.12 96719,96720 1xi1A 575 6.15e+01 1hbq 183 6.18e+01 1aqb b.60.1.1 27078 2fg1A 158 6.23e+01 1meoA 209 6.33e+01 c.65.1.1 79035 1fm2B 520 6.45e+01 1fm2B 1u58A 253 6.48e+01 1k77A 260 6.54e+01 c.1.15.5 72096 1eo9B 241 6.56e+01 3pchM b.3.6.1 22826 1j9lA 247 6.58e+01 c.106.1.1 62762 2fibA 269 6.59e+01 3fib d.171.1.1 42457 3fib 249 6.60e+01 3fib d.171.1.1 42455 1owfB 94 6.77e+01 a.55.1.1 87488 2f7tA 227 6.87e+01 1rmg 422 6.89e+01 1rmg b.80.1.3 28029 1oruA 195 6.91e+01 b.58.1.2 93464 2afcA 168 6.94e+01 1ocvA 125 6.98e+01 d.17.4.3 86810 1yr0A 175 6.99e+01 1t4wA 196 7.03e+01 b.2.5.2 106427 1bli 483 7.06e+01 1bli b.71.1.1,c.1.8.1 27715,28702 1pjhA 280 7.07e+01 c.14.1.3 94761 1hnuA 280 7.10e+01 1hnoA c.14.1.3 61096 1r6yA 115 7.12e+01 1tuvA 114 7.30e+01 1tjgH 237 7.31e+01 1ww7A 160 7.43e+01 1xfrA 128 7.46e+01 1g38A 393 7.78e+01 2admA c.66.1.27 60235 1ic6A 279 7.82e+01 1gci c.41.1.1 62257 1w2iA 91 7.84e+01 d.58.10.1 109127 1n9pA 207 7.93e+01 b.1.18.16 80343 1bd3A 243 7.93e+01 1bd3A c.61.1.1 34098 2furA 209 8.00e+01 1dkuA 317 8.13e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1l1qA 186 8.22e+01 c.61.1.1 77653 1ohpA 125 8.33e+01 1j1bA 420 8.41e+01 d.144.1.7 90758 1bzyA 217 8.61e+01 1qk3A c.61.1.1 34071 1wcdJ 441 8.62e+01 2bolA 314 8.63e+01 1qi9A 556 8.78e+01 1qhbA a.111.1.2 19053 1gnxA 479 8.82e+01 c.1.8.4 76241