# List of top-scoring protein chains for T0320.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1eu8A 409 1.42e-02 1eu8A c.94.1.1 59502 1twyA 290 9.17e-01 1uswA 260 1.70e+00 c.69.1.17 99895 2bjhA 260 1.71e+00 1uwcA 261 1.71e+00 c.69.1.17 100101 1d3gA 367 4.25e+00 1d3gA c.1.4.1 28600 2b0mA 393 4.54e+00 1md6A 154 6.10e+00 b.42.1.2 91242 1shyA 234 8.19e+00 b.47.1.2 105564 1ugvA 72 8.24e+00 b.34.2.1 99367 1si5H 240 8.32e+00 1rvkA 382 8.86e+00 c.1.11.2,d.54.1.1 97928,97929 2anlA 327 9.11e+00 1uumA 372 1.00e+01 c.1.4.1 100010 1oqvA 192 1.07e+01 d.24.1.2 87320 1qs8A 329 1.10e+01 1smrA b.50.1.2 26887 1miqA 375 1.32e+01 b.50.1.2 79151 1ofcX 304 1.34e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1j2fA 258 1.41e+01 b.26.1.3 90785 1gd6A 119 1.51e+01 3lzt d.2.1.2 60440 1zclA 180 1.51e+01 1xm2A 173 1.53e+01 1qynA 153 1.59e+01 d.33.1.1 96597 1fiqA 219 1.72e+01 1qj2A a.56.1.1,d.15.4.2 17912,37697 1wtaA 275 1.72e+01 1zckA 154 1.79e+01 1gvhA 396 1.79e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1rxdA 159 1.80e+01 1x24A 180 1.85e+01 1z6cA 87 1.89e+01 1pypA 285 1.90e+01 1qwtA 255 1.94e+01 b.26.1.3 96501 1ivyA 452 2.02e+01 1ivyA c.69.1.5 34654 1b10A 142 2.06e+01 1b10A d.6.1.1 37306 1j46A 85 2.09e+01 a.21.1.1 66372 1j47A 85 2.10e+01 a.21.1.1 66373 1wxtA 68 2.13e+01 1hryA 76 2.23e+01 1hryA a.21.1.1 16429 1w6yA 131 2.26e+01 1i6pA 220 2.27e+01 1ddzA c.53.2.1 61848 1zuwA 272 2.30e+01 1c7hA 131 2.36e+01 1opy d.17.4.3 38117 1jzdC 132 2.36e+01 b.1.17.1 84261 1z5yD 143 2.38e+01 1cskA 71 2.43e+01 1ckaA b.34.2.1 24513 2fyiA 228 2.46e+01 2cqeA 98 2.56e+01 1ls5A 328 2.62e+01 b.50.1.2 74240 1sqjA 789 2.67e+01 b.69.13.1,b.69.13.1 105918,105919 1oa4A 222 2.70e+01 b.29.1.11 86731 1tpxA 121 2.80e+01 d.6.1.1 107189 1y1uA 585 2.96e+01 1jegA 83 2.97e+01 b.34.2.1 66610 1rm6B 324 3.00e+01 1ea2A 131 3.13e+01 d.17.4.3 64860 1ohoA 131 3.15e+01 1dmqA 131 3.20e+01 1opy d.17.4.3 38116 1oh0A 131 3.23e+01 d.17.4.3 87004 2b32A 131 3.26e+01 1dx0A 219 3.75e+01 1b10A d.6.1.1 37324 1mioB 458 3.94e+01 1qguB c.92.2.3 35602 1cqsA 131 3.95e+01 d.17.4.3 83165 1xmkA 79 3.98e+01 1sd4A 126 4.21e+01 a.4.5.39 105428 1yvvA 336 4.81e+01 1w02A 131 4.84e+01 d.17.4.3 108981 1vzzA 131 4.97e+01 d.17.4.3 108977 2crbA 97 5.00e+01 1w00A 131 5.02e+01 1y6dA 120 5.20e+01 1p6xA 334 5.24e+01 c.37.1.1 94195 1fkcA 142 5.36e+01 1b10A d.6.1.1 37319 1qm0A 143 5.42e+01 1b10A d.6.1.1 37317 1ov3A 138 5.61e+01 b.34.2.1,b.34.2.1 87451,87452 1y96A 86 5.82e+01 2lefA 86 5.90e+01 2lefA a.21.1.1 16433 1ukcA 522 6.26e+01 c.69.1.17 107911 1nwvA 129 6.26e+01 g.18.1.1,g.18.1.1 86304,86305 1wlpB 138 6.47e+01 1u3oA 82 6.56e+01 1fx3A 169 6.58e+01 1fx3B d.33.1.1 38524 1v33A 366 6.69e+01 d.264.1.1 100278 1jewR 120 6.69e+01 i.6.1.1 66618 1kacB 124 6.89e+01 1neu b.1.1.1 19707 1tjtA 250 6.92e+01 1ve1A 304 6.95e+01 1rztA 331 6.98e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1xsnA 335 6.99e+01 1wkuA 254 7.00e+01 2bcqA 335 7.02e+01 1lf2A 331 7.04e+01 b.50.1.2 77914 1s1nA 68 7.09e+01 1eajA 126 7.12e+01 1f5wA b.1.1.1 59401 1rsfA 126 7.12e+01 b.1.1.1 97809 1y9iA 178 7.22e+01 1x40A 91 7.31e+01 1y71A 130 7.37e+01 1yrrA 382 7.38e+01 1qlxA 210 7.49e+01 1b10A d.6.1.1 37311 1dwyA 112 7.56e+01 1b10A d.6.1.1 37321 1eufA 227 7.61e+01 5ptp b.47.1.2 59506 1bpb 248 7.64e+01 1bpyA a.60.12.1,d.218.1.2 75811,75812 1a45 173 7.65e+01 1amm b.11.1.1,b.11.1.1 23602,23603 1rpl 251 7.68e+01 1bpyA a.60.12.1,d.218.1.2 75933,75934 1jn3A 251 7.76e+01 1bpyA a.60.12.1,d.218.1.2 75864,75865 1x1rA 178 7.90e+01 1fh1A 92 7.99e+01 1fh1A i.11.1.1 46014 1a4fB 146 8.03e+01 1abwA a.1.1.2 15573 1or4A 178 8.12e+01 a.1.1.2 93447 1u39A 80 8.21e+01 1zgpA 223 8.24e+01 1pdnC 128 8.24e+01 6paxA a.4.1.5 16047 1fawB 146 8.25e+01 a.1.1.2 65003 1s1hM 132 8.32e+01 i.1.1.1 105165 1xe5A 329 8.37e+01 1x8lA 351 8.37e+01 1xdhA 331 8.39e+01 1fmjA 351 8.42e+01 c.37.1.5 59879 1kcfA 258 8.50e+01 a.140.2.1,c.55.3.7 68434,68435 1ng2A 193 8.53e+01 b.34.2.1,b.34.2.1 85660,85661 2azwA 148 8.56e+01 2bjuA 453 8.58e+01 1y2sA 113 8.60e+01 1bpe 335 8.64e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 18076,75815,75816 1huzA 335 8.66e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 61281,75850,75851 1pfzA 380 8.77e+01 1smrA b.50.1.2 26881 1zgoA 223 8.80e+01 1zokA 93 8.80e+01 1jcaA 21 8.94e+01 1j73A 21 8.95e+01 2bjfA 329 8.99e+01