# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1it2A 146 5.77e-01 a.1.1.2 66365 1f00I 282 9.80e-01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1z6nA 167 1.45e+00 2fmpA 335 1.53e+00 1rlyA 60 2.54e+00 g.41.3.1 104988 2fp1A 166 2.97e+00 1w9yA 319 3.11e+00 1uz5A 402 3.42e+00 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1jb0A 755 3.50e+00 1jb0A f.29.1.1 62820 2a14A 263 3.74e+00 1y1pA 342 4.27e+00 1jqlB 140 4.69e+00 c.37.1.20 63234 2cobA 70 4.81e+00 2carA 196 5.24e+00 1go3F 107 5.88e+00 a.60.8.2 65407 1knvA 293 6.11e+00 c.52.1.7 68707 1weoA 93 6.24e+00 1w2iA 91 6.39e+00 d.58.10.1 109127 1nm2A 317 6.83e+00 c.19.1.1,d.58.23.1 80654,80655 1vp6A 138 7.12e+00 1a76 326 7.34e+00 1a76 a.60.7.1,c.120.1.2 18091,33361 2g7sA 194 7.59e+00 1ay7B 89 7.86e+00 1ay7B c.9.1.1 30836 1ed1A 135 8.25e+00 1hiwA a.61.1.1 18130 1yk4A 52 8.29e+00 1iro 54 8.77e+00 1rb9 g.41.5.1 45223 1jigA 146 8.84e+00 a.25.1.1 71685 1dfuP 94 8.99e+00 1dfuP b.53.1.1 26936 1wijA 140 9.54e+00 1sr2A 116 9.62e+00 1j7xA 302 9.70e+00 c.14.1.2 66425 1zin 217 9.75e+00 1zin c.37.1.1,g.41.2.1 31915,45178 2fztA 79 9.94e+00 1f5mA 180 1.00e+01 1f5mB d.110.2.1 40895 1fm4A 159 1.01e+01 1bv1 d.129.3.1 76186 1wozA 177 1.05e+01 1dv1A 449 1.14e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1vmjA 151 1.16e+01 1zaiA 363 1.19e+01 1xreA 217 1.21e+01 1b6g 310 1.29e+01 1b6g c.69.1.8 34661 2axwA 134 1.39e+01 2aa1B 146 1.39e+01 1t77A 414 1.40e+01 1vr5A 547 1.41e+01 2bjdA 101 1.42e+01 1b4bA 71 1.42e+01 1b4aA d.74.2.1 39718 1pp0A 199 1.42e+01 d.103.1.1 104211 1aa6 715 1.42e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1q5nA 454 1.47e+01 a.127.1.1 95901 1yua 122 1.51e+01 1yua g.41.3.3,g.41.3.3 45210,45211 2d28C 149 1.52e+01 1oj4A 283 1.54e+01 d.14.1.5,d.58.26.5 93083,93084 1lvaA 258 1.54e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1wy6A 172 1.60e+01 1km4A 247 1.67e+01 c.1.2.3 72740 2aawA 222 1.71e+01 2cc0A 195 1.71e+01 1v54F 98 1.85e+01 g.41.5.3 100327 1rdg 53 1.86e+01 1rb9 g.41.5.1 45221 2f6mB 109 1.88e+01 2hrvA 142 1.89e+01 2hrvA b.47.1.4 26429 1j8mF 297 1.91e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1zu4A 320 1.92e+01 2av5A 120 1.95e+01 2etvA 346 1.95e+01 1zt2B 212 1.96e+01 1x1zA 252 1.99e+01 1z1zA 131 1.99e+01 1no5A 114 2.05e+01 d.218.1.5 92014 1k4mA 213 2.08e+01 c.26.1.3 77258 1nq6A 302 2.09e+01 c.1.8.3 92046 2gdm 153 2.10e+01 2gdm a.1.1.2 15212 1fl1A 230 2.17e+01 1at3A b.57.1.1 27023 1rb9 53 2.18e+01 1rb9 g.41.5.1 45214 1dvpA 220 2.19e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1hdhA 536 2.20e+01 c.76.1.2 65805 1ub4A 110 2.21e+01 b.34.6.2 88399 2g8yA 385 2.33e+01 1eswA 500 2.36e+01 1cwyA c.1.8.1 59500 1iwmA 186 2.39e+01 b.125.1.2 83758 1kjnA 157 2.49e+01 c.115.1.1 72614 2a8eA 220 2.50e+01 1x1rA 178 2.54e+01 1v6zA 228 2.57e+01 1jyoE 105 2.59e+01 d.184.1.2 67487 1wrdA 103 2.66e+01 1u69A 163 2.68e+01 d.32.1.7 107699 1k5nB 100 2.69e+01 b.1.1.2 77268 1qzzA 374 2.71e+01 a.4.5.29,c.66.1.12 96719,96720 1wmiA 90 2.73e+01 2d5xA 141 2.79e+01 1rw1A 114 2.79e+01 1j8rA 196 2.82e+01 1j8rA b.2.3.3 62745 1pa7A 130 2.83e+01 a.40.1.1 94410 1nu0A 138 2.84e+01 c.55.3.8 92165 1reqA 727 2.86e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1zd9A 188 2.86e+01 1z90A 469 2.89e+01 1xkuA 330 2.92e+01 1w27A 714 2.93e+01 1c02A 166 3.05e+01 1qspA a.24.10.2 16633 1wcrA 103 3.07e+01 2g8mA 264 3.12e+01 2g8oA 264 3.16e+01 1qwlA 505 3.18e+01 e.5.1.1 96483 1u04A 771 3.19e+01 b.34.14.1,c.55.3.10 107539,107540 1woyA 500 3.21e+01 1mo0A 275 3.22e+01 c.1.1.1 79329 1d8bA 81 3.25e+01 1d8bA a.60.8.1 18094 1avqA 228 3.32e+01 1avqA c.52.1.13 33326 1wolA 122 3.32e+01 1r69 69 3.41e+01 1r69 a.35.1.2 17028 1zlqA 502 3.42e+01 1acc 735 3.42e+01 1acc f.11.1.1 43828 1rmd 116 3.47e+01 1rmd g.37.1.1,g.44.1.1 45025,45322 1ri5A 298 3.50e+01 c.66.1.34 97502 1wyuA 438 3.53e+01 1rocA 155 3.55e+01 b.1.22.1 97673 1hx1B 114 3.62e+01 1hx1B a.7.7.1 61350 1tig 94 3.66e+01 1tig d.68.1.1 39566 1jb0E 75 3.68e+01 1pse b.34.4.2 62824 2gaxA 135 3.74e+01 1gx1A 160 3.76e+01 d.79.5.1 70675 1unlD 208 3.80e+01 1wh5A 80 3.87e+01 1xszA 356 3.96e+01 1vq0A 302 3.99e+01 1uhkA 191 4.06e+01 1j2zA 270 4.08e+01 b.81.1.1 90805 1xocA 520 4.09e+01 1szoA 257 4.09e+01 c.14.1.3 106164 1v2bA 177 4.10e+01 d.107.1.2 108279 1f0lA 535 4.17e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1sziA 247 4.17e+01 a.24.23.1 106159 1u5kA 244 4.54e+01 1aisA 182 4.60e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1ulrA 88 4.64e+01 1wpbA 172 4.68e+01 1b8aA 438 4.73e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1s96A 219 4.74e+01 c.37.1.1 98740 1t0aA 159 4.77e+01 1wer 334 4.77e+01 1wer a.116.1.2 19108 2djkA 133 4.78e+01 1zarA 282 4.79e+01 2cyjA 118 4.84e+01 1ukuA 102 4.84e+01 d.58.5.2 99533 1aua 296 4.85e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1brfA 53 4.91e+01 1rb9 g.41.5.1 45236 1rsgA 516 4.92e+01 1ws0A 156 4.93e+01 1g9gA 629 4.95e+01 a.102.1.2 83279 1g8sA 230 5.07e+01 c.66.1.3 90507 1kwgA 645 5.09e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ngnA 155 5.13e+01 a.96.1.2 85697 1zsyA 357 5.23e+01 1t0iA 191 5.23e+01 c.23.5.4 106209 1q7lB 88 5.27e+01 1x8qA 184 5.36e+01 1qs1A 462 5.36e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1irdA 141 5.38e+01 a.1.1.2 66286 1dg6A 191 5.38e+01 1d4vB b.22.1.1 23883 1ne8A 117 5.42e+01 b.34.6.2 80424 1ucpA 91 5.43e+01 a.77.1.5 99186 1oktA 211 5.43e+01 a.45.1.1,c.47.1.5 93272,93273 1rljA 139 5.43e+01 c.23.5.7 104983 1kjvB 100 5.59e+01 b.1.1.2 77423 1n2aA 201 5.59e+01 a.45.1.1,c.47.1.5 91553,91554 1rg8A 146 5.76e+01 1ly1A 181 5.91e+01 c.37.1.1 74334 1oyzA 280 5.96e+01 a.118.1.16 93775 1s3eA 520 5.99e+01 c.3.1.2,d.16.1.5 98426,98427 1bfg 146 6.07e+01 1bfg b.42.1.1 25485 1xd3A 230 6.11e+01 2a8yA 270 6.16e+01 1yf3A 259 6.41e+01 1cdy 178 6.45e+01 1cdy b.1.1.1,b.1.1.3 19719,21658 2as0A 396 6.50e+01 1r8sE 203 6.56e+01 a.118.3.1 97248 2faoA 309 6.63e+01 1v0lA 313 6.66e+01 c.1.8.3 108207 1wosA 364 6.67e+01 b.44.2.1,d.250.1.1 109468,109469 1lkoA 191 6.68e+01 a.25.1.1,g.41.5.1 78063,78064 1yukB 120 6.70e+01 3il8 72 6.70e+01 1tvxA d.9.1.1 37356 1wnaA 131 6.76e+01 2es9A 115 6.86e+01 1ucrA 78 6.93e+01 a.4.5.45 99188 1w23A 360 7.03e+01 1zl0A 311 7.13e+01 1qhlA 227 7.17e+01 1qhlA c.37.1.12 32382 1wtaA 275 7.23e+01 1xtoA 311 7.24e+01 1sqnA 261 7.26e+01 a.123.1.1 105944 1xkrA 206 7.28e+01 1y0eA 223 7.29e+01 1qxfA 66 7.31e+01 g.41.8.4 96527 2a0b 125 7.37e+01 2a0b a.24.10.1 16630 1qqqA 264 7.39e+01 1bkpA d.117.1.1 40931 1sk4A 163 7.42e+01 d.118.1.1 105664 2b0cA 206 7.43e+01 1cy5A 97 7.63e+01 1cy5A a.77.1.3 18430 1vmfA 145 7.84e+01 1pzgA 331 7.95e+01 c.2.1.5,d.162.1.1 95425,95426 1v66A 65 7.96e+01 2bo4A 397 8.02e+01 1lam 484 8.05e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1vkmA 297 8.09e+01 c.138.1.1 108670 1c7qA 445 8.10e+01 2pgi c.80.1.2 35307 1zyiA 171 8.17e+01 1ylmA 144 8.30e+01 1l0bA 229 8.30e+01 c.15.1.3,c.15.1.3 73391,73392 1lq7A 67 8.31e+01 k.9.1.1 74183 1o8xA 146 8.33e+01 c.47.1.10 86681 1ve2A 235 8.36e+01 1pl4A 198 8.61e+01 a.2.11.1,d.44.1.1 94854,94855 2g7gA 213 8.61e+01 1qsaA 618 8.62e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1vapA 123 8.65e+01 1poa a.133.1.2 19548 1w33A 181 8.67e+01 1iyeA 309 8.70e+01 e.17.1.1 83786 1ho8A 480 8.73e+01 1ho8A a.118.1.9 61107 1xd7A 145 8.74e+01 a.4.5.55 109566 1jk8B 190 8.75e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1umdA 367 8.78e+01 c.36.1.11 99599 2bt6A 108 8.94e+01 1iv3A 152 8.97e+01 d.79.5.1 76828