# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zn8A 180 4.14e-01 1yhfA 115 8.07e-01 1d2eA 397 1.14e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1a6vL 110 1.16e+00 1mfa b.1.1.1 20256 2ait 74 1.17e+00 1hoe b.5.1.1 22837 1hoe 74 1.19e+00 1hoe b.5.1.1 22833 1ok0A 74 1.37e+00 b.5.1.1 93191 1a6uL 108 1.67e+00 1mfa b.1.1.1 20254 1oaqL 120 1.79e+00 b.1.1.1 92708 3ait 74 2.02e+00 1hoe b.5.1.1 22835 1a6wL 109 2.02e+00 1mfa b.1.1.1 20252 1uebA 184 2.44e+00 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1efuA 385 2.99e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1efcA 393 4.26e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1v6fA 151 4.44e+00 d.109.1.2 108395 2fs2A 151 4.62e+00 1psuA 140 4.93e+00 d.38.1.5 88285 1yhpA 212 6.00e+00 1z0sA 278 6.14e+00 1suwA 249 6.18e+00 e.52.1.1 106027 1914 232 7.44e+00 1914 d.49.1.1,d.49.1.1 83028,83029 1ifrA 121 7.46e+00 b.1.16.1 71203 2g8yA 385 7.90e+00 1o4tA 133 8.47e+00 b.82.1.9 86622 1ha3A 405 9.11e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1k9vF 201 1.00e+01 c.23.16.1 68365 1gpwB 201 1.11e+01 c.23.16.1 65461 1v70A 105 1.14e+01 1vkyA 347 1.22e+01 e.53.1.1 108696 1tu7A 208 1.26e+01 2c78A 405 1.26e+01 1x8hA 228 1.34e+01 1wh0A 134 1.48e+01 1eft 405 1.49e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1lu4A 136 1.52e+01 c.47.1.10 91124 2crvA 120 1.54e+01 1e8pA 46 1.54e+01 g.55.1.1 59385 1tltA 319 1.54e+01 c.2.1.3,d.81.1.5 107135,107136 1pz4A 116 1.64e+01 d.106.1.1 95400 1eajA 126 1.68e+01 1f5wA b.1.1.1 59401 1f5wA 126 1.68e+01 1f5wA b.1.1.1 19705 1xx0A 127 1.69e+01 2aw2A 120 1.70e+01 1vhzA 198 1.80e+01 d.113.1.1 100718 1zm0A 114 1.83e+01 1m2xA 223 1.90e+01 d.157.1.1 84764 1oalA 151 1.96e+01 b.1.8.1 86739 1z6bA 154 2.14e+01 1yruA 364 2.18e+01 1fil 139 2.24e+01 1pne d.110.1.1 40869 1awiA 138 2.25e+01 1pne d.110.1.1 40871 2aynA 404 2.29e+01 1j05A 111 2.32e+01 b.1.1.1 90735 2gpzA 111 2.33e+01 1mfa 247 2.55e+01 1mfa b.1.1.1,b.1.1.1 19888,19889 1yrtA 364 2.58e+01 3mefA 69 2.63e+01 1mjc b.40.4.5 25320 1h6yA 170 2.64e+01 b.18.1.7 70904 1exmA 405 2.65e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1zkiA 133 2.76e+01 1zkkA 167 2.82e+01 2bwrA 401 2.85e+01 1de4C 640 2.89e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1xn5A 146 2.98e+01 1fs0E 138 3.00e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1d3uA 181 3.01e+01 1ytbA d.129.1.1,d.129.1.1 41290,41291 1koqA 253 3.05e+01 2cba b.74.1.1 27964 1e8oA 85 3.05e+01 1914 d.49.1.1 38773 1bshA 138 3.08e+01 1aqt a.2.10.1,b.93.1.1 15720,28437 1dq3A 454 3.13e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1x8mA 288 3.15e+01 b.82.1.13 109516 1x05A 129 3.19e+01 1zotA 358 3.19e+01 1pjcA 361 3.46e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1sayA 361 3.46e+01 1sayA c.2.1.4,c.23.12.2 30102,31362 1aqt 138 3.48e+01 1aqt a.2.10.1,b.93.1.1 15718,28435 1nekA 588 3.57e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1v88A 130 3.58e+01 b.55.1.1 108423 1dyoA 160 3.60e+01 1dyoA b.18.1.7 23771 1nqeA 594 3.77e+01 f.4.3.3 86027 1m8aA 70 3.80e+01 d.9.1.1 74579 1xruA 282 3.91e+01 1uwcA 261 4.09e+01 c.69.1.17 100101 1i88A 389 4.10e+01 c.95.1.2,c.95.1.2 66070,66071 1neu 124 4.15e+01 1neu b.1.1.1 19704 1wzaA 488 4.19e+01 1ld4M 439 4.19e+01 i.6.1.1 77898 2bjhA 260 4.21e+01 1aipE 405 4.24e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25699,25739,32134 2alaA 391 4.34e+01 1ao5A 237 4.40e+01 5ptp b.47.1.2 26334 1mjc 69 4.41e+01 1mjc b.40.4.5 25319 1tbuA 118 4.63e+01 1aisA 182 4.69e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1pjbA 361 4.72e+01 1sayA c.2.1.4,c.23.12.2 30103,31363 1ofdA 1520 4.83e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1ygtA 111 4.85e+01 1c01A 76 4.96e+01 1c01A b.11.1.5 23633 1llwA 1520 4.96e+01 b.80.4.1,c.1.4.1,d.153.1.1 74017,74018,74019 1v5rA 97 4.97e+01 1uswA 260 4.98e+01 c.69.1.17 99895 2cw8A 537 5.02e+01 1qk4A 233 5.08e+01 1qk3A c.61.1.1 34037 1y7rA 133 5.33e+01 1ojqA 212 5.34e+01 d.166.1.1 93146 1aipA 405 5.35e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1e79D 482 5.38e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 2ck3D 482 5.40e+01 1yaiA 151 5.64e+01 1yaiA b.1.8.1 22289 1kbvA 327 5.68e+01 b.6.1.3,b.6.1.3 68395,68396 1ffkF 157 5.74e+01 1ffkF d.41.4.1 38628 1e3aB 560 5.95e+01 1ajqB 1o9wA 177 5.97e+01 b.2.3.5 86713 1n99A 166 6.00e+01 b.36.1.1,b.36.1.1 85459,85460 1pfl 139 6.01e+01 1pne d.110.1.1 40877 1pc0A 61 6.03e+01 b.137.1.1 94426 1gm9B 557 6.04e+01 1ajqB 557 6.04e+01 1ajqB 1gk9B 557 6.04e+01 1gkfB 557 6.05e+01 1gm7B 557 6.05e+01 1plc 99 6.08e+01 1plc b.6.1.1 22846 2pcy 99 6.08e+01 1plc b.6.1.1 22849 1pi2 63 6.11e+01 1pi2 g.3.13.1 44342 1cx8B 639 6.19e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17783,30764,33852 1h8eD 482 6.23e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1nqzA 194 6.41e+01 d.113.1.1 86077 1wspA 84 6.53e+01 2nmbA 160 6.57e+01 2nmbA b.55.1.2 26994 1z54A 132 6.68e+01 1pnkB 557 6.70e+01 1ajqB 2fhxA 246 6.74e+01 1vk3A 615 6.78e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1vk6A 269 6.79e+01 d.113.1.4,d.113.1.4 100851,100852 1cd8 114 6.80e+01 1cd8 b.1.1.1 19714 1qcsA 211 6.85e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1akjD 120 6.93e+01 1cd8 b.1.1.1 19712 1csp 67 7.26e+01 1mjc b.40.4.5 25321 1avyA 74 7.29e+01 1avyB h.1.17.1 45656 2gvaA 87 7.42e+01 1gvp b.40.4.7 25389 1h6qA 168 7.43e+01 1h6qA b.88.1.2 60692 1pne 140 7.49e+01 1pne d.110.1.1 40866 1yy5B 513 7.64e+01 1dd6A 228 7.66e+01 1a7tA d.157.1.1 42054 1s98A 107 7.67e+01 b.124.1.1 105377 1h54A 754 7.80e+01 a.102.1.4,b.30.5.3 60634,60635 1jjeA 222 7.84e+01 1a7tA d.157.1.1 63117 1avyC 74 7.92e+01 1avyB h.1.17.1 45658 1tul 108 7.95e+01 1tul b.85.5.1 28373 1tit 98 7.96e+01 1tit b.1.1.4 21716 1yg9A 330 7.97e+01 1y0gA 191 7.97e+01 1avyB 74 8.00e+01 1avyB h.1.17.1 45657 1ooeA 236 8.05e+01 c.2.1.2 87196 1h54B 754 8.25e+01 a.102.1.4,b.30.5.3 60636,60637 1ihvA 52 8.30e+01 1ihvA b.34.7.1 24629 1fjgL 135 8.38e+01 1fjfL b.40.4.5 25346 1wapA 75 8.53e+01 1wapA b.82.5.1 28153 1aa0 113 8.70e+01 1aa0 h.1.17.1 45659 1mexH 215 8.76e+01 b.1.1.1,b.1.1.2 91257,91258 1q87A 221 8.94e+01 e.47.1.1 96192