/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0314.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0314.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0314/ -e s/START_COL/1/ \ -e s/REAL_PDB/2hg6A/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1174910949 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.82111 sec, elapsed time= 6.31253 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.8961 sec, elapsed time= 6.61429 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0314 numbered 1 through 106 Created new target T0314 from T0314.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2hg6A expands to /projects/compbio/data/pdb/2hg6.pdb.gz 2hg6A: Read 106 residues and 854 atoms. # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.11077 sec, elapsed time= 9.00976 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 99 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -19.5755 # GDT_score(maxd=8,maxw=2.9)= -16.9948 # GDT_score(maxd=8,maxw=3.2)= -16.1091 # GDT_score(maxd=8,maxw=3.5)= -15.3521 # GDT_score(maxd=10,maxw=3.8)= -17.7606 # GDT_score(maxd=10,maxw=4)= -17.18 # GDT_score(maxd=10,maxw=4.2)= -16.5865 # GDT_score(maxd=12,maxw=4.3)= -19.0158 # GDT_score(maxd=12,maxw=4.5)= -18.3803 # GDT_score(maxd=12,maxw=4.7)= -17.7989 # GDT_score(maxd=14,maxw=5.2)= -18.6156 # GDT_score(maxd=14,maxw=5.5)= -17.8061 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.2770000e+03 rmsd (weighted)= 1.6507880e+01 (unweighted)= 1.6765708e+01 superimposing iter= 1 total_weight= 1.8038468e+03 rmsd (weighted)= 1.1081009e+01 (unweighted)= 1.6872459e+01 superimposing iter= 2 total_weight= 1.0598233e+03 rmsd (weighted)= 9.8349571e+00 (unweighted)= 1.7010461e+01 superimposing iter= 3 total_weight= 9.4438143e+02 rmsd (weighted)= 9.2913565e+00 (unweighted)= 1.7108912e+01 superimposing iter= 4 total_weight= 8.9182596e+02 rmsd (weighted)= 9.0461637e+00 (unweighted)= 1.7181580e+01 superimposing iter= 5 total_weight= 8.7369598e+02 rmsd (weighted)= 8.9045523e+00 (unweighted)= 1.7234917e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_31196836.pdb -s /var/tmp/to_scwrl_31196836.seq -o /var/tmp/from_scwrl_31196836.pdb > /var/tmp/scwrl_31196836.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31196836.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -23.3491 # GDT_score(maxd=8,maxw=2.9)= -21.2488 # GDT_score(maxd=8,maxw=3.2)= -19.9643 # GDT_score(maxd=8,maxw=3.5)= -18.8999 # GDT_score(maxd=10,maxw=3.8)= -21.8923 # GDT_score(maxd=10,maxw=4)= -21.1751 # GDT_score(maxd=10,maxw=4.2)= -20.5261 # GDT_score(maxd=12,maxw=4.3)= -23.4493 # GDT_score(maxd=12,maxw=4.5)= -22.7425 # GDT_score(maxd=12,maxw=4.7)= -22.0566 # GDT_score(maxd=14,maxw=5.2)= -23.0222 # GDT_score(maxd=14,maxw=5.5)= -22.1154 # command:# request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1337389101.pdb -s /var/tmp/to_scwrl_1337389101.seq -o /var/tmp/from_scwrl_1337389101.pdb > /var/tmp/scwrl_1337389101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1337389101.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -15.8019 # GDT_score(maxd=8,maxw=2.9)= -13.9953 # GDT_score(maxd=8,maxw=3.2)= -13.2139 # GDT_score(maxd=8,maxw=3.5)= -12.5665 # GDT_score(maxd=10,maxw=3.8)= -14.9447 # GDT_score(maxd=10,maxw=4)= -14.4805 # GDT_score(maxd=10,maxw=4.2)= -14.0328 # GDT_score(maxd=12,maxw=4.3)= -16.5487 # GDT_score(maxd=12,maxw=4.5)= -16.0312 # GDT_score(maxd=12,maxw=4.7)= -15.5497 # GDT_score(maxd=14,maxw=5.2)= -16.9273 # GDT_score(maxd=14,maxw=5.5)= -16.2613 # command:# request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_349087967.pdb -s /var/tmp/to_scwrl_349087967.seq -o /var/tmp/from_scwrl_349087967.pdb > /var/tmp/scwrl_349087967.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_349087967.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -18.3962 # GDT_score(maxd=8,maxw=2.9)= -17.439 # GDT_score(maxd=8,maxw=3.2)= -16.4011 # GDT_score(maxd=8,maxw=3.5)= -15.4805 # GDT_score(maxd=10,maxw=3.8)= -17.3088 # GDT_score(maxd=10,maxw=4)= -16.7264 # GDT_score(maxd=10,maxw=4.2)= -16.1994 # GDT_score(maxd=12,maxw=4.3)= -18.3951 # GDT_score(maxd=12,maxw=4.5)= -17.8291 # GDT_score(maxd=12,maxw=4.7)= -17.3062 # GDT_score(maxd=14,maxw=5.2)= -18.3554 # GDT_score(maxd=14,maxw=5.5)= -17.6115 # command:# request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1085376040.pdb -s /var/tmp/to_scwrl_1085376040.seq -o /var/tmp/from_scwrl_1085376040.pdb > /var/tmp/scwrl_1085376040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1085376040.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -19.1038 # GDT_score(maxd=8,maxw=2.9)= -17.3429 # GDT_score(maxd=8,maxw=3.2)= -16.5503 # GDT_score(maxd=8,maxw=3.5)= -15.8595 # GDT_score(maxd=10,maxw=3.8)= -17.9326 # GDT_score(maxd=10,maxw=4)= -17.4506 # GDT_score(maxd=10,maxw=4.2)= -16.979 # GDT_score(maxd=12,maxw=4.3)= -19.3349 # GDT_score(maxd=12,maxw=4.5)= -18.811 # GDT_score(maxd=12,maxw=4.7)= -18.2941 # GDT_score(maxd=14,maxw=5.2)= -19.3536 # GDT_score(maxd=14,maxw=5.5)= -18.6084 # command:# request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_27754785.pdb -s /var/tmp/to_scwrl_27754785.seq -o /var/tmp/from_scwrl_27754785.pdb > /var/tmp/scwrl_27754785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_27754785.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0314.try1-opt2.pdb looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -19.5755 # GDT_score(maxd=8,maxw=2.9)= -17.3854 # GDT_score(maxd=8,maxw=3.2)= -16.5123 # GDT_score(maxd=8,maxw=3.5)= -15.6098 # GDT_score(maxd=10,maxw=3.8)= -18.1435 # GDT_score(maxd=10,maxw=4)= -17.5193 # GDT_score(maxd=10,maxw=4.2)= -16.9546 # GDT_score(maxd=12,maxw=4.3)= -19.6109 # GDT_score(maxd=12,maxw=4.5)= -18.9909 # GDT_score(maxd=12,maxw=4.7)= -18.4236 # GDT_score(maxd=14,maxw=5.2)= -19.6105 # GDT_score(maxd=14,maxw=5.5)= -18.7981 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.2770000e+03 rmsd (weighted)= 1.5208751e+01 (unweighted)= 1.5477057e+01 superimposing iter= 1 total_weight= 1.7705398e+03 rmsd (weighted)= 1.0283399e+01 (unweighted)= 1.5624252e+01 superimposing iter= 2 total_weight= 1.0500547e+03 rmsd (weighted)= 9.1232037e+00 (unweighted)= 1.5873273e+01 superimposing iter= 3 total_weight= 9.7804424e+02 rmsd (weighted)= 8.4188051e+00 (unweighted)= 1.6113235e+01 superimposing iter= 4 total_weight= 9.4815106e+02 rmsd (weighted)= 7.9041745e+00 (unweighted)= 1.6307686e+01 superimposing iter= 5 total_weight= 9.2368756e+02 rmsd (weighted)= 7.5330489e+00 (unweighted)= 1.6442681e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0314.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0314)F21.C and (T0314)G26.C only 0.0000000e+00 apart, marking (T0314)G26.C as missing WARNING: atoms too close: (T0314)N22.N and (T0314)R27.N only 0.0000000e+00 apart, marking (T0314)N22.N as missing WARNING: atoms too close: (T0314)N22.CA and (T0314)R27.CA only 0.0000000e+00 apart, marking (T0314)N22.CA as missing WARNING: atoms too close: (T0314)E51.C and (T0314)R58.C only 0.0000000e+00 apart, marking (T0314)R58.C as missing WARNING: atoms too close: (T0314)F52.N and (T0314)D59.N only 0.0000000e+00 apart, marking (T0314)F52.N as missing WARNING: atoms too close: (T0314)F52.CA and (T0314)D59.CA only 0.0000000e+00 apart, marking (T0314)F52.CA as missing # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.575472 # GDT_score = -13.6792 # GDT_score(maxd=8,maxw=2.9)= -12.9738 # GDT_score(maxd=8,maxw=3.2)= -12.6304 # GDT_score(maxd=8,maxw=3.5)= -12.1771 # GDT_score(maxd=10,maxw=3.8)= -13.2376 # GDT_score(maxd=10,maxw=4)= -12.8803 # GDT_score(maxd=10,maxw=4.2)= -12.5354 # GDT_score(maxd=12,maxw=4.3)= -13.817 # GDT_score(maxd=12,maxw=4.5)= -13.4456 # GDT_score(maxd=12,maxw=4.7)= -13.0742 # GDT_score(maxd=14,maxw=5.2)= -13.5161 # GDT_score(maxd=14,maxw=5.5)= -12.994 # command:# ReadConformPDB reading from PDB file T0314.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.358491 # GDT_score = -13.6792 # GDT_score(maxd=8,maxw=2.9)= -13.3575 # GDT_score(maxd=8,maxw=3.2)= -12.8213 # GDT_score(maxd=8,maxw=3.5)= -12.3117 # GDT_score(maxd=10,maxw=3.8)= -13.2849 # GDT_score(maxd=10,maxw=4)= -12.9509 # GDT_score(maxd=10,maxw=4.2)= -12.6459 # GDT_score(maxd=12,maxw=4.3)= -13.6822 # GDT_score(maxd=12,maxw=4.5)= -13.3573 # GDT_score(maxd=12,maxw=4.7)= -13.0139 # GDT_score(maxd=14,maxw=5.2)= -13.2636 # GDT_score(maxd=14,maxw=5.5)= -12.746 # command:# ReadConformPDB reading from PDB file T0314.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0314.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0314)D59.C and (T0314)R63.C only 0.0000000e+00 apart, marking (T0314)R63.C as missing WARNING: atoms too close: (T0314)D60.N and (T0314)L64.N only 0.0000000e+00 apart, marking (T0314)D60.N as missing WARNING: atoms too close: (T0314)D60.CA and (T0314)L64.CA only 0.0000000e+00 apart, marking (T0314)D60.CA as missing # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0314.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0314)F18.C and (T0314)K24.C only 0.0000000e+00 apart, marking (T0314)K24.C as missing WARNING: atoms too close: (T0314)V19.N and (T0314)T25.N only 0.0000000e+00 apart, marking (T0314)V19.N as missing WARNING: atoms too close: (T0314)V19.CA and (T0314)T25.CA only 0.0000000e+00 apart, marking (T0314)V19.CA as missing WARNING: atoms too close: (T0314)G26.C and (T0314)D59.C only 0.0000000e+00 apart, marking (T0314)D59.C as missing WARNING: atoms too close: (T0314)R27.N and (T0314)D60.N only 0.0000000e+00 apart, marking (T0314)R27.N as missing WARNING: atoms too close: (T0314)R27.CA and (T0314)D60.CA only 0.0000000e+00 apart, marking (T0314)R27.CA as missing # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt2-moved-strand-and-helices.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try14-opt2.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0314.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try18-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try19-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try19-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try19-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try19-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try19-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2-fix-loop-2nd-try.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2-fix-loop.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2-moved-strand-and-helix.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt2.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt2-fix-loop.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt2-fix-loop.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt1.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt2.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt2-fix-loop.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt1.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt2.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt2.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1126877284.pdb -s /var/tmp/to_scwrl_1126877284.seq -o /var/tmp/from_scwrl_1126877284.pdb > /var/tmp/scwrl_1126877284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1126877284.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1825708437.pdb -s /var/tmp/to_scwrl_1825708437.seq -o /var/tmp/from_scwrl_1825708437.pdb > /var/tmp/scwrl_1825708437.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1825708437.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_265758823.pdb -s /var/tmp/to_scwrl_265758823.seq -o /var/tmp/from_scwrl_265758823.pdb > /var/tmp/scwrl_265758823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_265758823.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1083491001.pdb -s /var/tmp/to_scwrl_1083491001.seq -o /var/tmp/from_scwrl_1083491001.pdb > /var/tmp/scwrl_1083491001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1083491001.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1494135347.pdb -s /var/tmp/to_scwrl_1494135347.seq -o /var/tmp/from_scwrl_1494135347.pdb > /var/tmp/scwrl_1494135347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1494135347.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1665985847.pdb -s /var/tmp/to_scwrl_1665985847.seq -o /var/tmp/from_scwrl_1665985847.pdb > /var/tmp/scwrl_1665985847.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1665985847.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_21855872.pdb -s /var/tmp/to_scwrl_21855872.seq -o /var/tmp/from_scwrl_21855872.pdb > /var/tmp/scwrl_21855872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_21855872.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_630138186.pdb -s /var/tmp/to_scwrl_630138186.seq -o /var/tmp/from_scwrl_630138186.pdb > /var/tmp/scwrl_630138186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_630138186.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1941874758.pdb -s /var/tmp/to_scwrl_1941874758.seq -o /var/tmp/from_scwrl_1941874758.pdb > /var/tmp/scwrl_1941874758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1941874758.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1124956595.pdb -s /var/tmp/to_scwrl_1124956595.seq -o /var/tmp/from_scwrl_1124956595.pdb > /var/tmp/scwrl_1124956595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1124956595.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_929914967.pdb -s /var/tmp/to_scwrl_929914967.seq -o /var/tmp/from_scwrl_929914967.pdb > /var/tmp/scwrl_929914967.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_929914967.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2123194584.pdb -s /var/tmp/to_scwrl_2123194584.seq -o /var/tmp/from_scwrl_2123194584.pdb > /var/tmp/scwrl_2123194584.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2123194584.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_852696079.pdb -s /var/tmp/to_scwrl_852696079.seq -o /var/tmp/from_scwrl_852696079.pdb > /var/tmp/scwrl_852696079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_852696079.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_845567256.pdb -s /var/tmp/to_scwrl_845567256.seq -o /var/tmp/from_scwrl_845567256.pdb > /var/tmp/scwrl_845567256.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_845567256.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_672798467.pdb -s /var/tmp/to_scwrl_672798467.seq -o /var/tmp/from_scwrl_672798467.pdb > /var/tmp/scwrl_672798467.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_672798467.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_682296487.pdb -s /var/tmp/to_scwrl_682296487.seq -o /var/tmp/from_scwrl_682296487.pdb > /var/tmp/scwrl_682296487.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_682296487.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_167353766.pdb -s /var/tmp/to_scwrl_167353766.seq -o /var/tmp/from_scwrl_167353766.pdb > /var/tmp/scwrl_167353766.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_167353766.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_96505509.pdb -s /var/tmp/to_scwrl_96505509.seq -o /var/tmp/from_scwrl_96505509.pdb > /var/tmp/scwrl_96505509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_96505509.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_136518090.pdb -s /var/tmp/to_scwrl_136518090.seq -o /var/tmp/from_scwrl_136518090.pdb > /var/tmp/scwrl_136518090.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136518090.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_389040810.pdb -s /var/tmp/to_scwrl_389040810.seq -o /var/tmp/from_scwrl_389040810.pdb > /var/tmp/scwrl_389040810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_389040810.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1698315365.pdb -s /var/tmp/to_scwrl_1698315365.seq -o /var/tmp/from_scwrl_1698315365.pdb > /var/tmp/scwrl_1698315365.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1698315365.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_538798141.pdb -s /var/tmp/to_scwrl_538798141.seq -o /var/tmp/from_scwrl_538798141.pdb > /var/tmp/scwrl_538798141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_538798141.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1110692226.pdb -s /var/tmp/to_scwrl_1110692226.seq -o /var/tmp/from_scwrl_1110692226.pdb > /var/tmp/scwrl_1110692226.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1110692226.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2068314198.pdb -s /var/tmp/to_scwrl_2068314198.seq -o /var/tmp/from_scwrl_2068314198.pdb > /var/tmp/scwrl_2068314198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2068314198.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_733524965.pdb -s /var/tmp/to_scwrl_733524965.seq -o /var/tmp/from_scwrl_733524965.pdb > /var/tmp/scwrl_733524965.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_733524965.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1293231771.pdb -s /var/tmp/to_scwrl_1293231771.seq -o /var/tmp/from_scwrl_1293231771.pdb > /var/tmp/scwrl_1293231771.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1293231771.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2099511034.pdb -s /var/tmp/to_scwrl_2099511034.seq -o /var/tmp/from_scwrl_2099511034.pdb > /var/tmp/scwrl_2099511034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2099511034.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2070914066.pdb -s /var/tmp/to_scwrl_2070914066.seq -o /var/tmp/from_scwrl_2070914066.pdb > /var/tmp/scwrl_2070914066.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2070914066.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1642319738.pdb -s /var/tmp/to_scwrl_1642319738.seq -o /var/tmp/from_scwrl_1642319738.pdb > /var/tmp/scwrl_1642319738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1642319738.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1037403428.pdb -s /var/tmp/to_scwrl_1037403428.seq -o /var/tmp/from_scwrl_1037403428.pdb > /var/tmp/scwrl_1037403428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1037403428.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2098668851.pdb -s /var/tmp/to_scwrl_2098668851.seq -o /var/tmp/from_scwrl_2098668851.pdb > /var/tmp/scwrl_2098668851.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2098668851.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_621713377.pdb -s /var/tmp/to_scwrl_621713377.seq -o /var/tmp/from_scwrl_621713377.pdb > /var/tmp/scwrl_621713377.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_621713377.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_715628219.pdb -s /var/tmp/to_scwrl_715628219.seq -o /var/tmp/from_scwrl_715628219.pdb > /var/tmp/scwrl_715628219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_715628219.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_216944027.pdb -s /var/tmp/to_scwrl_216944027.seq -o /var/tmp/from_scwrl_216944027.pdb > /var/tmp/scwrl_216944027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_216944027.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1705204378.pdb -s /var/tmp/to_scwrl_1705204378.seq -o /var/tmp/from_scwrl_1705204378.pdb > /var/tmp/scwrl_1705204378.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1705204378.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_62279919.pdb -s /var/tmp/to_scwrl_62279919.seq -o /var/tmp/from_scwrl_62279919.pdb > /var/tmp/scwrl_62279919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62279919.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1882929874.pdb -s /var/tmp/to_scwrl_1882929874.seq -o /var/tmp/from_scwrl_1882929874.pdb > /var/tmp/scwrl_1882929874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1882929874.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1727060250.pdb -s /var/tmp/to_scwrl_1727060250.seq -o /var/tmp/from_scwrl_1727060250.pdb > /var/tmp/scwrl_1727060250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1727060250.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_692418105.pdb -s /var/tmp/to_scwrl_692418105.seq -o /var/tmp/from_scwrl_692418105.pdb > /var/tmp/scwrl_692418105.log Error: Couldn't open file /var/tmp/from_scwrl_692418105.pdb or /var/tmp/from_scwrl_692418105.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_692418105_b.pdb or decoys//var/tmp/from_scwrl_692418105_b.pdb.gz for input Trying /var/tmp/from_scwrl_692418105_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_692418105_b.pdb or /var/tmp/from_scwrl_692418105_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_692418105_a.pdb or decoys//var/tmp/from_scwrl_692418105_a.pdb.gz for input Trying /var/tmp/from_scwrl_692418105_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_692418105_a.pdb or /var/tmp/from_scwrl_692418105_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_692418105.pdb or /var/tmp/from_scwrl_692418105_b.pdb or /var/tmp/from_scwrl_692418105_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1677320986.pdb -s /var/tmp/to_scwrl_1677320986.seq -o /var/tmp/from_scwrl_1677320986.pdb > /var/tmp/scwrl_1677320986.log Error: Couldn't open file /var/tmp/from_scwrl_1677320986.pdb or /var/tmp/from_scwrl_1677320986.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1677320986_b.pdb or decoys//var/tmp/from_scwrl_1677320986_b.pdb.gz for input Trying /var/tmp/from_scwrl_1677320986_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1677320986_b.pdb or /var/tmp/from_scwrl_1677320986_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1677320986_a.pdb or decoys//var/tmp/from_scwrl_1677320986_a.pdb.gz for input Trying /var/tmp/from_scwrl_1677320986_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1677320986_a.pdb or /var/tmp/from_scwrl_1677320986_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1677320986.pdb or /var/tmp/from_scwrl_1677320986_b.pdb or /var/tmp/from_scwrl_1677320986_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_704533200.pdb -s /var/tmp/to_scwrl_704533200.seq -o /var/tmp/from_scwrl_704533200.pdb > /var/tmp/scwrl_704533200.log Error: Couldn't open file /var/tmp/from_scwrl_704533200.pdb or /var/tmp/from_scwrl_704533200.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_704533200_b.pdb or decoys//var/tmp/from_scwrl_704533200_b.pdb.gz for input Trying /var/tmp/from_scwrl_704533200_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_704533200_b.pdb or /var/tmp/from_scwrl_704533200_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_704533200_a.pdb or decoys//var/tmp/from_scwrl_704533200_a.pdb.gz for input Trying /var/tmp/from_scwrl_704533200_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_704533200_a.pdb or /var/tmp/from_scwrl_704533200_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_704533200.pdb or /var/tmp/from_scwrl_704533200_b.pdb or /var/tmp/from_scwrl_704533200_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1622333072.pdb -s /var/tmp/to_scwrl_1622333072.seq -o /var/tmp/from_scwrl_1622333072.pdb > /var/tmp/scwrl_1622333072.log Error: Couldn't open file /var/tmp/from_scwrl_1622333072.pdb or /var/tmp/from_scwrl_1622333072.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1622333072_b.pdb or decoys//var/tmp/from_scwrl_1622333072_b.pdb.gz for input Trying /var/tmp/from_scwrl_1622333072_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1622333072_b.pdb or /var/tmp/from_scwrl_1622333072_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1622333072_a.pdb or decoys//var/tmp/from_scwrl_1622333072_a.pdb.gz for input Trying /var/tmp/from_scwrl_1622333072_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1622333072_a.pdb or /var/tmp/from_scwrl_1622333072_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1622333072.pdb or /var/tmp/from_scwrl_1622333072_b.pdb or /var/tmp/from_scwrl_1622333072_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1653031923.pdb -s /var/tmp/to_scwrl_1653031923.seq -o /var/tmp/from_scwrl_1653031923.pdb > /var/tmp/scwrl_1653031923.log Error: Couldn't open file /var/tmp/from_scwrl_1653031923.pdb or /var/tmp/from_scwrl_1653031923.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1653031923_b.pdb or decoys//var/tmp/from_scwrl_1653031923_b.pdb.gz for input Trying /var/tmp/from_scwrl_1653031923_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1653031923_b.pdb or /var/tmp/from_scwrl_1653031923_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1653031923_a.pdb or decoys//var/tmp/from_scwrl_1653031923_a.pdb.gz for input Trying /var/tmp/from_scwrl_1653031923_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1653031923_a.pdb or /var/tmp/from_scwrl_1653031923_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1653031923.pdb or /var/tmp/from_scwrl_1653031923_b.pdb or /var/tmp/from_scwrl_1653031923_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1557229278.pdb -s /var/tmp/to_scwrl_1557229278.seq -o /var/tmp/from_scwrl_1557229278.pdb > /var/tmp/scwrl_1557229278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1557229278.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_320416681.pdb -s /var/tmp/to_scwrl_320416681.seq -o /var/tmp/from_scwrl_320416681.pdb > /var/tmp/scwrl_320416681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_320416681.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_178346744.pdb -s /var/tmp/to_scwrl_178346744.seq -o /var/tmp/from_scwrl_178346744.pdb > /var/tmp/scwrl_178346744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_178346744.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_92042119.pdb -s /var/tmp/to_scwrl_92042119.seq -o /var/tmp/from_scwrl_92042119.pdb > /var/tmp/scwrl_92042119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_92042119.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_487770447.pdb -s /var/tmp/to_scwrl_487770447.seq -o /var/tmp/from_scwrl_487770447.pdb > /var/tmp/scwrl_487770447.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_487770447.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_274852253.pdb -s /var/tmp/to_scwrl_274852253.seq -o /var/tmp/from_scwrl_274852253.pdb > /var/tmp/scwrl_274852253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_274852253.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_228560209.pdb -s /var/tmp/to_scwrl_228560209.seq -o /var/tmp/from_scwrl_228560209.pdb > /var/tmp/scwrl_228560209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_228560209.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_876811257.pdb -s /var/tmp/to_scwrl_876811257.seq -o /var/tmp/from_scwrl_876811257.pdb > /var/tmp/scwrl_876811257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_876811257.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1973167618.pdb -s /var/tmp/to_scwrl_1973167618.seq -o /var/tmp/from_scwrl_1973167618.pdb > /var/tmp/scwrl_1973167618.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1973167618.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_767358351.pdb -s /var/tmp/to_scwrl_767358351.seq -o /var/tmp/from_scwrl_767358351.pdb > /var/tmp/scwrl_767358351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_767358351.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1987503483.pdb -s /var/tmp/to_scwrl_1987503483.seq -o /var/tmp/from_scwrl_1987503483.pdb > /var/tmp/scwrl_1987503483.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1987503483.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1893998169.pdb -s /var/tmp/to_scwrl_1893998169.seq -o /var/tmp/from_scwrl_1893998169.pdb > /var/tmp/scwrl_1893998169.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1893998169.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1500883315.pdb -s /var/tmp/to_scwrl_1500883315.seq -o /var/tmp/from_scwrl_1500883315.pdb > /var/tmp/scwrl_1500883315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1500883315.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1133251607.pdb -s /var/tmp/to_scwrl_1133251607.seq -o /var/tmp/from_scwrl_1133251607.pdb > /var/tmp/scwrl_1133251607.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1133251607.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1846025557.pdb -s /var/tmp/to_scwrl_1846025557.seq -o /var/tmp/from_scwrl_1846025557.pdb > /var/tmp/scwrl_1846025557.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1846025557.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1424313734.pdb -s /var/tmp/to_scwrl_1424313734.seq -o /var/tmp/from_scwrl_1424313734.pdb > /var/tmp/scwrl_1424313734.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1424313734.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_628087700.pdb -s /var/tmp/to_scwrl_628087700.seq -o /var/tmp/from_scwrl_628087700.pdb > /var/tmp/scwrl_628087700.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_628087700.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_735945338.pdb -s /var/tmp/to_scwrl_735945338.seq -o /var/tmp/from_scwrl_735945338.pdb > /var/tmp/scwrl_735945338.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_735945338.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1375498939.pdb -s /var/tmp/to_scwrl_1375498939.seq -o /var/tmp/from_scwrl_1375498939.pdb > /var/tmp/scwrl_1375498939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375498939.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 138, because occupancy 1.0000000e+00 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 140, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 342, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 344, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1249801076.pdb -s /var/tmp/to_scwrl_1249801076.seq -o /var/tmp/from_scwrl_1249801076.pdb > /var/tmp/scwrl_1249801076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1249801076.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1451573556.pdb -s /var/tmp/to_scwrl_1451573556.seq -o /var/tmp/from_scwrl_1451573556.pdb > /var/tmp/scwrl_1451573556.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1451573556.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1592442966.pdb -s /var/tmp/to_scwrl_1592442966.seq -o /var/tmp/from_scwrl_1592442966.pdb > /var/tmp/scwrl_1592442966.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1592442966.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_807521808.pdb -s /var/tmp/to_scwrl_807521808.seq -o /var/tmp/from_scwrl_807521808.pdb > /var/tmp/scwrl_807521808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_807521808.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 Skipped atom 138, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 140, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 342, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 344, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1513853475.pdb -s /var/tmp/to_scwrl_1513853475.seq -o /var/tmp/from_scwrl_1513853475.pdb > /var/tmp/scwrl_1513853475.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1513853475.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1327889194.pdb -s /var/tmp/to_scwrl_1327889194.seq -o /var/tmp/from_scwrl_1327889194.pdb > /var/tmp/scwrl_1327889194.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1327889194.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_387098411.pdb -s /var/tmp/to_scwrl_387098411.seq -o /var/tmp/from_scwrl_387098411.pdb > /var/tmp/scwrl_387098411.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_387098411.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_58787934.pdb -s /var/tmp/to_scwrl_58787934.seq -o /var/tmp/from_scwrl_58787934.pdb > /var/tmp/scwrl_58787934.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_58787934.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_857726534.pdb -s /var/tmp/to_scwrl_857726534.seq -o /var/tmp/from_scwrl_857726534.pdb > /var/tmp/scwrl_857726534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_857726534.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1091631610.pdb -s /var/tmp/to_scwrl_1091631610.seq -o /var/tmp/from_scwrl_1091631610.pdb > /var/tmp/scwrl_1091631610.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1091631610.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1681121006.pdb -s /var/tmp/to_scwrl_1681121006.seq -o /var/tmp/from_scwrl_1681121006.pdb > /var/tmp/scwrl_1681121006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1681121006.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_363274810.pdb -s /var/tmp/to_scwrl_363274810.seq -o /var/tmp/from_scwrl_363274810.pdb > /var/tmp/scwrl_363274810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_363274810.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_501377243.pdb -s /var/tmp/to_scwrl_501377243.seq -o /var/tmp/from_scwrl_501377243.pdb > /var/tmp/scwrl_501377243.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_501377243.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2001537687.pdb -s /var/tmp/to_scwrl_2001537687.seq -o /var/tmp/from_scwrl_2001537687.pdb > /var/tmp/scwrl_2001537687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2001537687.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_541621554.pdb -s /var/tmp/to_scwrl_541621554.seq -o /var/tmp/from_scwrl_541621554.pdb > /var/tmp/scwrl_541621554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_541621554.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_593419362.pdb -s /var/tmp/to_scwrl_593419362.seq -o /var/tmp/from_scwrl_593419362.pdb > /var/tmp/scwrl_593419362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_593419362.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_341824487.pdb -s /var/tmp/to_scwrl_341824487.seq -o /var/tmp/from_scwrl_341824487.pdb > /var/tmp/scwrl_341824487.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_341824487.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_816473808.pdb -s /var/tmp/to_scwrl_816473808.seq -o /var/tmp/from_scwrl_816473808.pdb > /var/tmp/scwrl_816473808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_816473808.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_821979571.pdb -s /var/tmp/to_scwrl_821979571.seq -o /var/tmp/from_scwrl_821979571.pdb > /var/tmp/scwrl_821979571.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821979571.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1218635743.pdb -s /var/tmp/to_scwrl_1218635743.seq -o /var/tmp/from_scwrl_1218635743.pdb > /var/tmp/scwrl_1218635743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1218635743.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_642157779.pdb -s /var/tmp/to_scwrl_642157779.seq -o /var/tmp/from_scwrl_642157779.pdb > /var/tmp/scwrl_642157779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642157779.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1589337921.pdb -s /var/tmp/to_scwrl_1589337921.seq -o /var/tmp/from_scwrl_1589337921.pdb > /var/tmp/scwrl_1589337921.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1589337921.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1058655580.pdb -s /var/tmp/to_scwrl_1058655580.seq -o /var/tmp/from_scwrl_1058655580.pdb > /var/tmp/scwrl_1058655580.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1058655580.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_388672302.pdb -s /var/tmp/to_scwrl_388672302.seq -o /var/tmp/from_scwrl_388672302.pdb > /var/tmp/scwrl_388672302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_388672302.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_942737590.pdb -s /var/tmp/to_scwrl_942737590.seq -o /var/tmp/from_scwrl_942737590.pdb > /var/tmp/scwrl_942737590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_942737590.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_44423541.pdb -s /var/tmp/to_scwrl_44423541.seq -o /var/tmp/from_scwrl_44423541.pdb > /var/tmp/scwrl_44423541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_44423541.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_87214212.pdb -s /var/tmp/to_scwrl_87214212.seq -o /var/tmp/from_scwrl_87214212.pdb > /var/tmp/scwrl_87214212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_87214212.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_219567678.pdb -s /var/tmp/to_scwrl_219567678.seq -o /var/tmp/from_scwrl_219567678.pdb > /var/tmp/scwrl_219567678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_219567678.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_672511241.pdb -s /var/tmp/to_scwrl_672511241.seq -o /var/tmp/from_scwrl_672511241.pdb > /var/tmp/scwrl_672511241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_672511241.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_823159550.pdb -s /var/tmp/to_scwrl_823159550.seq -o /var/tmp/from_scwrl_823159550.pdb > /var/tmp/scwrl_823159550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_823159550.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1595066617.pdb -s /var/tmp/to_scwrl_1595066617.seq -o /var/tmp/from_scwrl_1595066617.pdb > /var/tmp/scwrl_1595066617.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1595066617.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1922312317.pdb -s /var/tmp/to_scwrl_1922312317.seq -o /var/tmp/from_scwrl_1922312317.pdb > /var/tmp/scwrl_1922312317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1922312317.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_127249460.pdb -s /var/tmp/to_scwrl_127249460.seq -o /var/tmp/from_scwrl_127249460.pdb > /var/tmp/scwrl_127249460.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_127249460.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1040025937.pdb -s /var/tmp/to_scwrl_1040025937.seq -o /var/tmp/from_scwrl_1040025937.pdb > /var/tmp/scwrl_1040025937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1040025937.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_582350478.pdb -s /var/tmp/to_scwrl_582350478.seq -o /var/tmp/from_scwrl_582350478.pdb > /var/tmp/scwrl_582350478.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_582350478.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1641102935.pdb -s /var/tmp/to_scwrl_1641102935.seq -o /var/tmp/from_scwrl_1641102935.pdb > /var/tmp/scwrl_1641102935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1641102935.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_220431484.pdb -s /var/tmp/to_scwrl_220431484.seq -o /var/tmp/from_scwrl_220431484.pdb > /var/tmp/scwrl_220431484.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_220431484.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_969448889.pdb -s /var/tmp/to_scwrl_969448889.seq -o /var/tmp/from_scwrl_969448889.pdb > /var/tmp/scwrl_969448889.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_969448889.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1699890869.pdb -s /var/tmp/to_scwrl_1699890869.seq -o /var/tmp/from_scwrl_1699890869.pdb > /var/tmp/scwrl_1699890869.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1699890869.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1078158017.pdb -s /var/tmp/to_scwrl_1078158017.seq -o /var/tmp/from_scwrl_1078158017.pdb > /var/tmp/scwrl_1078158017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1078158017.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2061080500.pdb -s /var/tmp/to_scwrl_2061080500.seq -o /var/tmp/from_scwrl_2061080500.pdb > /var/tmp/scwrl_2061080500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061080500.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1233528228.pdb -s /var/tmp/to_scwrl_1233528228.seq -o /var/tmp/from_scwrl_1233528228.pdb > /var/tmp/scwrl_1233528228.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1233528228.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1441432828.pdb -s /var/tmp/to_scwrl_1441432828.seq -o /var/tmp/from_scwrl_1441432828.pdb > /var/tmp/scwrl_1441432828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1441432828.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_414974096.pdb -s /var/tmp/to_scwrl_414974096.seq -o /var/tmp/from_scwrl_414974096.pdb > /var/tmp/scwrl_414974096.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_414974096.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1087582268.pdb -s /var/tmp/to_scwrl_1087582268.seq -o /var/tmp/from_scwrl_1087582268.pdb > /var/tmp/scwrl_1087582268.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1087582268.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1983054382.pdb -s /var/tmp/to_scwrl_1983054382.seq -o /var/tmp/from_scwrl_1983054382.pdb > /var/tmp/scwrl_1983054382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983054382.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1008393458.pdb -s /var/tmp/to_scwrl_1008393458.seq -o /var/tmp/from_scwrl_1008393458.pdb > /var/tmp/scwrl_1008393458.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1008393458.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1429406755.pdb -s /var/tmp/to_scwrl_1429406755.seq -o /var/tmp/from_scwrl_1429406755.pdb > /var/tmp/scwrl_1429406755.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1429406755.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_652044543.pdb -s /var/tmp/to_scwrl_652044543.seq -o /var/tmp/from_scwrl_652044543.pdb > /var/tmp/scwrl_652044543.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_652044543.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1830373028.pdb -s /var/tmp/to_scwrl_1830373028.seq -o /var/tmp/from_scwrl_1830373028.pdb > /var/tmp/scwrl_1830373028.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1830373028.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 WARNING: atom 1 has residue number 10 < previous residue 106 in servers/POMYSL_TS1.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_500558852.pdb -s /var/tmp/to_scwrl_500558852.seq -o /var/tmp/from_scwrl_500558852.pdb > /var/tmp/scwrl_500558852.log Error: Couldn't open file /var/tmp/from_scwrl_500558852.pdb or /var/tmp/from_scwrl_500558852.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_500558852_b.pdb or decoys//var/tmp/from_scwrl_500558852_b.pdb.gz for input Trying /var/tmp/from_scwrl_500558852_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_500558852_b.pdb or /var/tmp/from_scwrl_500558852_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_500558852_a.pdb or decoys//var/tmp/from_scwrl_500558852_a.pdb.gz for input Trying /var/tmp/from_scwrl_500558852_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_500558852_a.pdb or /var/tmp/from_scwrl_500558852_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_500558852.pdb or /var/tmp/from_scwrl_500558852_b.pdb or /var/tmp/from_scwrl_500558852_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 10 < previous residue 106 in servers/POMYSL_TS2.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1294202322.pdb -s /var/tmp/to_scwrl_1294202322.seq -o /var/tmp/from_scwrl_1294202322.pdb > /var/tmp/scwrl_1294202322.log Error: Couldn't open file /var/tmp/from_scwrl_1294202322.pdb or /var/tmp/from_scwrl_1294202322.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1294202322_b.pdb or decoys//var/tmp/from_scwrl_1294202322_b.pdb.gz for input Trying /var/tmp/from_scwrl_1294202322_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1294202322_b.pdb or /var/tmp/from_scwrl_1294202322_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1294202322_a.pdb or decoys//var/tmp/from_scwrl_1294202322_a.pdb.gz for input Trying /var/tmp/from_scwrl_1294202322_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1294202322_a.pdb or /var/tmp/from_scwrl_1294202322_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1294202322.pdb or /var/tmp/from_scwrl_1294202322_b.pdb or /var/tmp/from_scwrl_1294202322_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1272227303.pdb -s /var/tmp/to_scwrl_1272227303.seq -o /var/tmp/from_scwrl_1272227303.pdb > /var/tmp/scwrl_1272227303.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1272227303.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1559214432.pdb -s /var/tmp/to_scwrl_1559214432.seq -o /var/tmp/from_scwrl_1559214432.pdb > /var/tmp/scwrl_1559214432.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1559214432.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1682874624.pdb -s /var/tmp/to_scwrl_1682874624.seq -o /var/tmp/from_scwrl_1682874624.pdb > /var/tmp/scwrl_1682874624.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1682874624.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_67481246.pdb -s /var/tmp/to_scwrl_67481246.seq -o /var/tmp/from_scwrl_67481246.pdb > /var/tmp/scwrl_67481246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_67481246.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1603637973.pdb -s /var/tmp/to_scwrl_1603637973.seq -o /var/tmp/from_scwrl_1603637973.pdb > /var/tmp/scwrl_1603637973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1603637973.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1770088836.pdb -s /var/tmp/to_scwrl_1770088836.seq -o /var/tmp/from_scwrl_1770088836.pdb > /var/tmp/scwrl_1770088836.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770088836.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_287048924.pdb -s /var/tmp/to_scwrl_287048924.seq -o /var/tmp/from_scwrl_287048924.pdb > /var/tmp/scwrl_287048924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_287048924.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_128665567.pdb -s /var/tmp/to_scwrl_128665567.seq -o /var/tmp/from_scwrl_128665567.pdb > /var/tmp/scwrl_128665567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_128665567.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_445764739.pdb -s /var/tmp/to_scwrl_445764739.seq -o /var/tmp/from_scwrl_445764739.pdb > /var/tmp/scwrl_445764739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_445764739.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1882115541.pdb -s /var/tmp/to_scwrl_1882115541.seq -o /var/tmp/from_scwrl_1882115541.pdb > /var/tmp/scwrl_1882115541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1882115541.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2050977884.pdb -s /var/tmp/to_scwrl_2050977884.seq -o /var/tmp/from_scwrl_2050977884.pdb > /var/tmp/scwrl_2050977884.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2050977884.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_573014199.pdb -s /var/tmp/to_scwrl_573014199.seq -o /var/tmp/from_scwrl_573014199.pdb > /var/tmp/scwrl_573014199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_573014199.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_774657832.pdb -s /var/tmp/to_scwrl_774657832.seq -o /var/tmp/from_scwrl_774657832.pdb > /var/tmp/scwrl_774657832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_774657832.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_485844715.pdb -s /var/tmp/to_scwrl_485844715.seq -o /var/tmp/from_scwrl_485844715.pdb > /var/tmp/scwrl_485844715.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_485844715.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_66633488.pdb -s /var/tmp/to_scwrl_66633488.seq -o /var/tmp/from_scwrl_66633488.pdb > /var/tmp/scwrl_66633488.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_66633488.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_995089316.pdb -s /var/tmp/to_scwrl_995089316.seq -o /var/tmp/from_scwrl_995089316.pdb > /var/tmp/scwrl_995089316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_995089316.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1455293603.pdb -s /var/tmp/to_scwrl_1455293603.seq -o /var/tmp/from_scwrl_1455293603.pdb > /var/tmp/scwrl_1455293603.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1455293603.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1766524357.pdb -s /var/tmp/to_scwrl_1766524357.seq -o /var/tmp/from_scwrl_1766524357.pdb > /var/tmp/scwrl_1766524357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1766524357.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2073247334.pdb -s /var/tmp/to_scwrl_2073247334.seq -o /var/tmp/from_scwrl_2073247334.pdb > /var/tmp/scwrl_2073247334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2073247334.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1368890456.pdb -s /var/tmp/to_scwrl_1368890456.seq -o /var/tmp/from_scwrl_1368890456.pdb > /var/tmp/scwrl_1368890456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1368890456.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_852568940.pdb -s /var/tmp/to_scwrl_852568940.seq -o /var/tmp/from_scwrl_852568940.pdb > /var/tmp/scwrl_852568940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_852568940.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1367196515.pdb -s /var/tmp/to_scwrl_1367196515.seq -o /var/tmp/from_scwrl_1367196515.pdb > /var/tmp/scwrl_1367196515.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1367196515.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1783864552.pdb -s /var/tmp/to_scwrl_1783864552.seq -o /var/tmp/from_scwrl_1783864552.pdb > /var/tmp/scwrl_1783864552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1783864552.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1940151208.pdb -s /var/tmp/to_scwrl_1940151208.seq -o /var/tmp/from_scwrl_1940151208.pdb > /var/tmp/scwrl_1940151208.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1940151208.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1202767250.pdb -s /var/tmp/to_scwrl_1202767250.seq -o /var/tmp/from_scwrl_1202767250.pdb > /var/tmp/scwrl_1202767250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1202767250.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_644774363.pdb -s /var/tmp/to_scwrl_644774363.seq -o /var/tmp/from_scwrl_644774363.pdb > /var/tmp/scwrl_644774363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_644774363.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1222074317.pdb -s /var/tmp/to_scwrl_1222074317.seq -o /var/tmp/from_scwrl_1222074317.pdb > /var/tmp/scwrl_1222074317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1222074317.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1854811794.pdb -s /var/tmp/to_scwrl_1854811794.seq -o /var/tmp/from_scwrl_1854811794.pdb > /var/tmp/scwrl_1854811794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1854811794.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_327663745.pdb -s /var/tmp/to_scwrl_327663745.seq -o /var/tmp/from_scwrl_327663745.pdb > /var/tmp/scwrl_327663745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_327663745.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1722633169.pdb -s /var/tmp/to_scwrl_1722633169.seq -o /var/tmp/from_scwrl_1722633169.pdb > /var/tmp/scwrl_1722633169.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1722633169.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1001530470.pdb -s /var/tmp/to_scwrl_1001530470.seq -o /var/tmp/from_scwrl_1001530470.pdb > /var/tmp/scwrl_1001530470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1001530470.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1599891048.pdb -s /var/tmp/to_scwrl_1599891048.seq -o /var/tmp/from_scwrl_1599891048.pdb > /var/tmp/scwrl_1599891048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1599891048.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1134363954.pdb -s /var/tmp/to_scwrl_1134363954.seq -o /var/tmp/from_scwrl_1134363954.pdb > /var/tmp/scwrl_1134363954.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1134363954.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_536921447.pdb -s /var/tmp/to_scwrl_536921447.seq -o /var/tmp/from_scwrl_536921447.pdb > /var/tmp/scwrl_536921447.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_536921447.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1667372294.pdb -s /var/tmp/to_scwrl_1667372294.seq -o /var/tmp/from_scwrl_1667372294.pdb > /var/tmp/scwrl_1667372294.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1667372294.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_590518281.pdb -s /var/tmp/to_scwrl_590518281.seq -o /var/tmp/from_scwrl_590518281.pdb > /var/tmp/scwrl_590518281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_590518281.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_159526636.pdb -s /var/tmp/to_scwrl_159526636.seq -o /var/tmp/from_scwrl_159526636.pdb > /var/tmp/scwrl_159526636.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_159526636.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1954421219.pdb -s /var/tmp/to_scwrl_1954421219.seq -o /var/tmp/from_scwrl_1954421219.pdb > /var/tmp/scwrl_1954421219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1954421219.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_719183848.pdb -s /var/tmp/to_scwrl_719183848.seq -o /var/tmp/from_scwrl_719183848.pdb > /var/tmp/scwrl_719183848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_719183848.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_605291375.pdb -s /var/tmp/to_scwrl_605291375.seq -o /var/tmp/from_scwrl_605291375.pdb > /var/tmp/scwrl_605291375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_605291375.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 1 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1689053113.pdb -s /var/tmp/to_scwrl_1689053113.seq -o /var/tmp/from_scwrl_1689053113.pdb > /var/tmp/scwrl_1689053113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1689053113.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_622678085.pdb -s /var/tmp/to_scwrl_622678085.seq -o /var/tmp/from_scwrl_622678085.pdb > /var/tmp/scwrl_622678085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_622678085.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1178305574.pdb -s /var/tmp/to_scwrl_1178305574.seq -o /var/tmp/from_scwrl_1178305574.pdb > /var/tmp/scwrl_1178305574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1178305574.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_316227298.pdb -s /var/tmp/to_scwrl_316227298.seq -o /var/tmp/from_scwrl_316227298.pdb > /var/tmp/scwrl_316227298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_316227298.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1108522799.pdb -s /var/tmp/to_scwrl_1108522799.seq -o /var/tmp/from_scwrl_1108522799.pdb > /var/tmp/scwrl_1108522799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1108522799.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1244939062.pdb -s /var/tmp/to_scwrl_1244939062.seq -o /var/tmp/from_scwrl_1244939062.pdb > /var/tmp/scwrl_1244939062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1244939062.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1311316614.pdb -s /var/tmp/to_scwrl_1311316614.seq -o /var/tmp/from_scwrl_1311316614.pdb > /var/tmp/scwrl_1311316614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1311316614.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_416332757.pdb -s /var/tmp/to_scwrl_416332757.seq -o /var/tmp/from_scwrl_416332757.pdb > /var/tmp/scwrl_416332757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_416332757.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_863979773.pdb -s /var/tmp/to_scwrl_863979773.seq -o /var/tmp/from_scwrl_863979773.pdb > /var/tmp/scwrl_863979773.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_863979773.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1237080301.pdb -s /var/tmp/to_scwrl_1237080301.seq -o /var/tmp/from_scwrl_1237080301.pdb > /var/tmp/scwrl_1237080301.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1237080301.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1785223213.pdb -s /var/tmp/to_scwrl_1785223213.seq -o /var/tmp/from_scwrl_1785223213.pdb > /var/tmp/scwrl_1785223213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1785223213.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1716548712.pdb -s /var/tmp/to_scwrl_1716548712.seq -o /var/tmp/from_scwrl_1716548712.pdb > /var/tmp/scwrl_1716548712.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1716548712.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_456793170.pdb -s /var/tmp/to_scwrl_456793170.seq -o /var/tmp/from_scwrl_456793170.pdb > /var/tmp/scwrl_456793170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_456793170.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1421604119.pdb -s /var/tmp/to_scwrl_1421604119.seq -o /var/tmp/from_scwrl_1421604119.pdb > /var/tmp/scwrl_1421604119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1421604119.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1509216274.pdb -s /var/tmp/to_scwrl_1509216274.seq -o /var/tmp/from_scwrl_1509216274.pdb > /var/tmp/scwrl_1509216274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1509216274.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1659560420.pdb -s /var/tmp/to_scwrl_1659560420.seq -o /var/tmp/from_scwrl_1659560420.pdb > /var/tmp/scwrl_1659560420.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1659560420.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2066378482.pdb -s /var/tmp/to_scwrl_2066378482.seq -o /var/tmp/from_scwrl_2066378482.pdb > /var/tmp/scwrl_2066378482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2066378482.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_583806945.pdb -s /var/tmp/to_scwrl_583806945.seq -o /var/tmp/from_scwrl_583806945.pdb > /var/tmp/scwrl_583806945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_583806945.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1366888567.pdb -s /var/tmp/to_scwrl_1366888567.seq -o /var/tmp/from_scwrl_1366888567.pdb > /var/tmp/scwrl_1366888567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1366888567.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_246558580.pdb -s /var/tmp/to_scwrl_246558580.seq -o /var/tmp/from_scwrl_246558580.pdb > /var/tmp/scwrl_246558580.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_246558580.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_158956467.pdb -s /var/tmp/to_scwrl_158956467.seq -o /var/tmp/from_scwrl_158956467.pdb > /var/tmp/scwrl_158956467.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_158956467.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_220935390.pdb -s /var/tmp/to_scwrl_220935390.seq -o /var/tmp/from_scwrl_220935390.pdb > /var/tmp/scwrl_220935390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_220935390.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1846449628.pdb -s /var/tmp/to_scwrl_1846449628.seq -o /var/tmp/from_scwrl_1846449628.pdb > /var/tmp/scwrl_1846449628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1846449628.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1293320422.pdb -s /var/tmp/to_scwrl_1293320422.seq -o /var/tmp/from_scwrl_1293320422.pdb > /var/tmp/scwrl_1293320422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1293320422.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_757856837.pdb -s /var/tmp/to_scwrl_757856837.seq -o /var/tmp/from_scwrl_757856837.pdb > /var/tmp/scwrl_757856837.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_757856837.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1366338276.pdb -s /var/tmp/to_scwrl_1366338276.seq -o /var/tmp/from_scwrl_1366338276.pdb > /var/tmp/scwrl_1366338276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1366338276.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1883838703.pdb -s /var/tmp/to_scwrl_1883838703.seq -o /var/tmp/from_scwrl_1883838703.pdb > /var/tmp/scwrl_1883838703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1883838703.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_917383473.pdb -s /var/tmp/to_scwrl_917383473.seq -o /var/tmp/from_scwrl_917383473.pdb > /var/tmp/scwrl_917383473.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_917383473.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1173275848.pdb -s /var/tmp/to_scwrl_1173275848.seq -o /var/tmp/from_scwrl_1173275848.pdb > /var/tmp/scwrl_1173275848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1173275848.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_455538905.pdb -s /var/tmp/to_scwrl_455538905.seq -o /var/tmp/from_scwrl_455538905.pdb > /var/tmp/scwrl_455538905.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_455538905.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1522674848.pdb -s /var/tmp/to_scwrl_1522674848.seq -o /var/tmp/from_scwrl_1522674848.pdb > /var/tmp/scwrl_1522674848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1522674848.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_714845315.pdb -s /var/tmp/to_scwrl_714845315.seq -o /var/tmp/from_scwrl_714845315.pdb > /var/tmp/scwrl_714845315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_714845315.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1078216989.pdb -s /var/tmp/to_scwrl_1078216989.seq -o /var/tmp/from_scwrl_1078216989.pdb > /var/tmp/scwrl_1078216989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1078216989.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_553496776.pdb -s /var/tmp/to_scwrl_553496776.seq -o /var/tmp/from_scwrl_553496776.pdb > /var/tmp/scwrl_553496776.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_553496776.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1031072614.pdb -s /var/tmp/to_scwrl_1031072614.seq -o /var/tmp/from_scwrl_1031072614.pdb > /var/tmp/scwrl_1031072614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1031072614.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_39256143.pdb -s /var/tmp/to_scwrl_39256143.seq -o /var/tmp/from_scwrl_39256143.pdb > /var/tmp/scwrl_39256143.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_39256143.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1798435838.pdb -s /var/tmp/to_scwrl_1798435838.seq -o /var/tmp/from_scwrl_1798435838.pdb > /var/tmp/scwrl_1798435838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1798435838.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_194905581.pdb -s /var/tmp/to_scwrl_194905581.seq -o /var/tmp/from_scwrl_194905581.pdb > /var/tmp/scwrl_194905581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_194905581.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_455588900.pdb -s /var/tmp/to_scwrl_455588900.seq -o /var/tmp/from_scwrl_455588900.pdb > /var/tmp/scwrl_455588900.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_455588900.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_514931964.pdb -s /var/tmp/to_scwrl_514931964.seq -o /var/tmp/from_scwrl_514931964.pdb > /var/tmp/scwrl_514931964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_514931964.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1431985882.pdb -s /var/tmp/to_scwrl_1431985882.seq -o /var/tmp/from_scwrl_1431985882.pdb > /var/tmp/scwrl_1431985882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1431985882.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 Skipped atom 54, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_93328466.pdb -s /var/tmp/to_scwrl_93328466.seq -o /var/tmp/from_scwrl_93328466.pdb > /var/tmp/scwrl_93328466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_93328466.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_83997030.pdb -s /var/tmp/to_scwrl_83997030.seq -o /var/tmp/from_scwrl_83997030.pdb > /var/tmp/scwrl_83997030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_83997030.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1888779052.pdb -s /var/tmp/to_scwrl_1888779052.seq -o /var/tmp/from_scwrl_1888779052.pdb > /var/tmp/scwrl_1888779052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1888779052.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1514932585.pdb -s /var/tmp/to_scwrl_1514932585.seq -o /var/tmp/from_scwrl_1514932585.pdb > /var/tmp/scwrl_1514932585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1514932585.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1593213304.pdb -s /var/tmp/to_scwrl_1593213304.seq -o /var/tmp/from_scwrl_1593213304.pdb > /var/tmp/scwrl_1593213304.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1593213304.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1400855825.pdb -s /var/tmp/to_scwrl_1400855825.seq -o /var/tmp/from_scwrl_1400855825.pdb > /var/tmp/scwrl_1400855825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1400855825.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1433827421.pdb -s /var/tmp/to_scwrl_1433827421.seq -o /var/tmp/from_scwrl_1433827421.pdb > /var/tmp/scwrl_1433827421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1433827421.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_29536602.pdb -s /var/tmp/to_scwrl_29536602.seq -o /var/tmp/from_scwrl_29536602.pdb > /var/tmp/scwrl_29536602.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_29536602.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_620260747.pdb -s /var/tmp/to_scwrl_620260747.seq -o /var/tmp/from_scwrl_620260747.pdb > /var/tmp/scwrl_620260747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_620260747.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1680386001.pdb -s /var/tmp/to_scwrl_1680386001.seq -o /var/tmp/from_scwrl_1680386001.pdb > /var/tmp/scwrl_1680386001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1680386001.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_188493069.pdb -s /var/tmp/to_scwrl_188493069.seq -o /var/tmp/from_scwrl_188493069.pdb > /var/tmp/scwrl_188493069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_188493069.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_841196137.pdb -s /var/tmp/to_scwrl_841196137.seq -o /var/tmp/from_scwrl_841196137.pdb > /var/tmp/scwrl_841196137.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_841196137.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1379351983.pdb -s /var/tmp/to_scwrl_1379351983.seq -o /var/tmp/from_scwrl_1379351983.pdb > /var/tmp/scwrl_1379351983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1379351983.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 Skipped atom 6, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 8, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 10, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 12, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 238, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 240, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 244, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 342, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 344, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 346, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 348, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 350, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 352, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 402, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 404, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1481813491.pdb -s /var/tmp/to_scwrl_1481813491.seq -o /var/tmp/from_scwrl_1481813491.pdb > /var/tmp/scwrl_1481813491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1481813491.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1599052974.pdb -s /var/tmp/to_scwrl_1599052974.seq -o /var/tmp/from_scwrl_1599052974.pdb > /var/tmp/scwrl_1599052974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1599052974.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_598206613.pdb -s /var/tmp/to_scwrl_598206613.seq -o /var/tmp/from_scwrl_598206613.pdb > /var/tmp/scwrl_598206613.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_598206613.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1218168548.pdb -s /var/tmp/to_scwrl_1218168548.seq -o /var/tmp/from_scwrl_1218168548.pdb > /var/tmp/scwrl_1218168548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1218168548.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_368952800.pdb -s /var/tmp/to_scwrl_368952800.seq -o /var/tmp/from_scwrl_368952800.pdb > /var/tmp/scwrl_368952800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_368952800.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1771482461.pdb -s /var/tmp/to_scwrl_1771482461.seq -o /var/tmp/from_scwrl_1771482461.pdb > /var/tmp/scwrl_1771482461.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1771482461.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1673707453.pdb -s /var/tmp/to_scwrl_1673707453.seq -o /var/tmp/from_scwrl_1673707453.pdb > /var/tmp/scwrl_1673707453.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1673707453.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1891627648.pdb -s /var/tmp/to_scwrl_1891627648.seq -o /var/tmp/from_scwrl_1891627648.pdb > /var/tmp/scwrl_1891627648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1891627648.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_338844129.pdb -s /var/tmp/to_scwrl_338844129.seq -o /var/tmp/from_scwrl_338844129.pdb > /var/tmp/scwrl_338844129.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_338844129.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0314)R103.O and (T0314)Q104.N only 0.000 apart, marking (T0314)Q104.N as missing # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_604440796.pdb -s /var/tmp/to_scwrl_604440796.seq -o /var/tmp/from_scwrl_604440796.pdb > /var/tmp/scwrl_604440796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_604440796.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_297640777.pdb -s /var/tmp/to_scwrl_297640777.seq -o /var/tmp/from_scwrl_297640777.pdb > /var/tmp/scwrl_297640777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_297640777.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1369916742.pdb -s /var/tmp/to_scwrl_1369916742.seq -o /var/tmp/from_scwrl_1369916742.pdb > /var/tmp/scwrl_1369916742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1369916742.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_643696939.pdb -s /var/tmp/to_scwrl_643696939.seq -o /var/tmp/from_scwrl_643696939.pdb > /var/tmp/scwrl_643696939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_643696939.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2096076615.pdb -s /var/tmp/to_scwrl_2096076615.seq -o /var/tmp/from_scwrl_2096076615.pdb > /var/tmp/scwrl_2096076615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2096076615.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1564822323.pdb -s /var/tmp/to_scwrl_1564822323.seq -o /var/tmp/from_scwrl_1564822323.pdb > /var/tmp/scwrl_1564822323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1564822323.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1099285838.pdb -s /var/tmp/to_scwrl_1099285838.seq -o /var/tmp/from_scwrl_1099285838.pdb > /var/tmp/scwrl_1099285838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1099285838.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_463524933.pdb -s /var/tmp/to_scwrl_463524933.seq -o /var/tmp/from_scwrl_463524933.pdb > /var/tmp/scwrl_463524933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_463524933.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_849324559.pdb -s /var/tmp/to_scwrl_849324559.seq -o /var/tmp/from_scwrl_849324559.pdb > /var/tmp/scwrl_849324559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_849324559.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1192614305.pdb -s /var/tmp/to_scwrl_1192614305.seq -o /var/tmp/from_scwrl_1192614305.pdb > /var/tmp/scwrl_1192614305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1192614305.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_547521963.pdb -s /var/tmp/to_scwrl_547521963.seq -o /var/tmp/from_scwrl_547521963.pdb > /var/tmp/scwrl_547521963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_547521963.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_590619964.pdb -s /var/tmp/to_scwrl_590619964.seq -o /var/tmp/from_scwrl_590619964.pdb > /var/tmp/scwrl_590619964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_590619964.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 7 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_560063244.pdb -s /var/tmp/to_scwrl_560063244.seq -o /var/tmp/from_scwrl_560063244.pdb > /var/tmp/scwrl_560063244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_560063244.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2140735267.pdb -s /var/tmp/to_scwrl_2140735267.seq -o /var/tmp/from_scwrl_2140735267.pdb > /var/tmp/scwrl_2140735267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2140735267.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1991475790.pdb -s /var/tmp/to_scwrl_1991475790.seq -o /var/tmp/from_scwrl_1991475790.pdb > /var/tmp/scwrl_1991475790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1991475790.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1993890665.pdb -s /var/tmp/to_scwrl_1993890665.seq -o /var/tmp/from_scwrl_1993890665.pdb > /var/tmp/scwrl_1993890665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1993890665.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_22788222.pdb -s /var/tmp/to_scwrl_22788222.seq -o /var/tmp/from_scwrl_22788222.pdb > /var/tmp/scwrl_22788222.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_22788222.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_464252890.pdb -s /var/tmp/to_scwrl_464252890.seq -o /var/tmp/from_scwrl_464252890.pdb > /var/tmp/scwrl_464252890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_464252890.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1526793020.pdb -s /var/tmp/to_scwrl_1526793020.seq -o /var/tmp/from_scwrl_1526793020.pdb > /var/tmp/scwrl_1526793020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1526793020.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_211281291.pdb -s /var/tmp/to_scwrl_211281291.seq -o /var/tmp/from_scwrl_211281291.pdb > /var/tmp/scwrl_211281291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_211281291.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1305449026.pdb -s /var/tmp/to_scwrl_1305449026.seq -o /var/tmp/from_scwrl_1305449026.pdb > /var/tmp/scwrl_1305449026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1305449026.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_758661357.pdb -s /var/tmp/to_scwrl_758661357.seq -o /var/tmp/from_scwrl_758661357.pdb > /var/tmp/scwrl_758661357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_758661357.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 34.9387 sec, elapsed time= 270.638 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = 346.415 shub_TS1 costs 0 real_cost = 345.369 panther2_TS1-scwrl costs 0 real_cost = 434.56 panther2_TS1 costs 0 real_cost = 433.562 nFOLD_TS5-scwrl costs 0 real_cost = 330.252 nFOLD_TS5 costs 0 real_cost = 384.16 nFOLD_TS4-scwrl costs 0 real_cost = 353.9 nFOLD_TS4 costs 0 real_cost = 385.734 nFOLD_TS3-scwrl costs 0 real_cost = 332.005 nFOLD_TS3 costs 0 real_cost = 392.411 nFOLD_TS2-scwrl costs 0 real_cost = 325.369 nFOLD_TS2 costs 0 real_cost = 378.64 nFOLD_TS1-scwrl costs 0 real_cost = 295.36 nFOLD_TS1 costs 0 real_cost = 354.277 mGen-3D_TS1-scwrl costs 0 real_cost = 333.17 mGen-3D_TS1 costs 0 real_cost = 361.333 keasar-server_TS5-scwrl costs 0 real_cost = 327.211 keasar-server_TS5 costs 0 real_cost = 325.926 keasar-server_TS4-scwrl costs 0 real_cost = 317.667 keasar-server_TS4 costs 0 real_cost = 322.773 keasar-server_TS3-scwrl costs 0 real_cost = 317.968 keasar-server_TS3 costs 0 real_cost = 322.389 keasar-server_TS2-scwrl costs 0 real_cost = 322.001 keasar-server_TS2 costs 0 real_cost = 324.681 keasar-server_TS1-scwrl costs 0 real_cost = 317.069 keasar-server_TS1 costs 0 real_cost = 317.172 karypis.srv_TS5-scwrl costs 0 real_cost = 338.991 karypis.srv_TS5 costs 0 real_cost = 337.527 karypis.srv_TS4-scwrl costs 0 real_cost = 330.145 karypis.srv_TS4 costs 0 real_cost = 329.618 karypis.srv_TS3-scwrl costs 0 real_cost = 327.156 karypis.srv_TS3 costs 0 real_cost = 326.38 karypis.srv_TS2-scwrl costs 0 real_cost = 351.041 karypis.srv_TS2 costs 0 real_cost = 350.144 karypis.srv_TS1-scwrl costs 0 real_cost = 320.916 karypis.srv_TS1 costs 0 real_cost = 321.174 karypis.srv.4_TS5-scwrl costs 0 real_cost = 336.355 karypis.srv.4_TS5 costs 0 real_cost = 336.355 karypis.srv.4_TS4-scwrl costs 0 real_cost = 335.14 karypis.srv.4_TS4 costs 0 real_cost = 335.167 karypis.srv.4_TS3-scwrl costs 0 real_cost = 318.153 karypis.srv.4_TS3 costs 0 real_cost = 318.127 karypis.srv.4_TS2-scwrl costs 0 real_cost = 306.037 karypis.srv.4_TS2 costs 0 real_cost = 306.93 karypis.srv.4_TS1-scwrl costs 0 real_cost = 357.489 karypis.srv.4_TS1 costs 0 real_cost = 357.489 karypis.srv.2_TS5-scwrl costs 0 real_cost = 331.182 karypis.srv.2_TS5 costs 0 real_cost = 331.182 karypis.srv.2_TS4-scwrl costs 0 real_cost = 297.99 karypis.srv.2_TS4 costs 0 real_cost = 298.012 karypis.srv.2_TS3-scwrl costs 0 real_cost = 318.475 karypis.srv.2_TS3 costs 0 real_cost = 318.289 karypis.srv.2_TS2-scwrl costs 0 real_cost = 297.736 karypis.srv.2_TS2 costs 0 real_cost = 297.736 karypis.srv.2_TS1-scwrl costs 0 real_cost = 291.943 karypis.srv.2_TS1 costs 0 real_cost = 291.943 forecast-s_AL5-scwrl costs 0 real_cost = 360.076 forecast-s_AL5 costs 0 real_cost = 426.558 forecast-s_AL4-scwrl costs 0 real_cost = 373.997 forecast-s_AL4 costs 0 real_cost = 444.261 forecast-s_AL3-scwrl costs 0 real_cost = 339.622 forecast-s_AL3 costs 0 real_cost = 414.706 forecast-s_AL2-scwrl costs 0 real_cost = 393.257 forecast-s_AL2 costs 0 real_cost = 448.671 forecast-s_AL1-scwrl costs 0 real_cost = 415.209 forecast-s_AL1 costs 0 real_cost = 458.592 beautshotbase_TS1-scwrl costs 0 real_cost = 332.222 beautshotbase_TS1 costs 0 real_cost = 320.85 beautshot_TS1-scwrl costs 0 real_cost = 301.339 beautshot_TS1 costs 0 real_cost = 297.481 Zhang-Server_TS5-scwrl costs 0 real_cost = 254.841 Zhang-Server_TS5 costs 0 real_cost = 256.904 Zhang-Server_TS4-scwrl costs 0 real_cost = 288.777 Zhang-Server_TS4 costs 0 real_cost = 289.636 Zhang-Server_TS3-scwrl costs 0 real_cost = 259.202 Zhang-Server_TS3 costs 0 real_cost = 259.211 Zhang-Server_TS2-scwrl costs 0 real_cost = 290.693 Zhang-Server_TS2 costs 0 real_cost = 293.042 Zhang-Server_TS1-scwrl costs 0 real_cost = 273.368 Zhang-Server_TS1 costs 0 real_cost = 270.177 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = 392.155 UNI-EID_sfst_AL5 costs 0 real_cost = 437.29 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = 330.874 UNI-EID_sfst_AL4 costs 0 real_cost = 369.776 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = 366.06 UNI-EID_sfst_AL3 costs 0 real_cost = 414.897 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = 424.87 UNI-EID_sfst_AL2 costs 0 real_cost = 446.579 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 433.293 UNI-EID_sfst_AL1 costs 0 real_cost = 439.982 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 355.821 UNI-EID_expm_TS1 costs 0 real_cost = 397.142 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = 357.783 UNI-EID_bnmx_TS5 costs 0 real_cost = 409.125 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = 407.56 UNI-EID_bnmx_TS4 costs 0 real_cost = 452.577 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = 378.642 UNI-EID_bnmx_TS3 costs 0 real_cost = 427.08 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = 374.376 UNI-EID_bnmx_TS2 costs 0 real_cost = 427.107 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 374.122 UNI-EID_bnmx_TS1 costs 0 real_cost = 419.261 SPARKS2_TS5-scwrl costs 0 real_cost = 325.124 SPARKS2_TS5 costs 0 real_cost = 326.633 SPARKS2_TS4-scwrl costs 0 real_cost = 301.839 SPARKS2_TS4 costs 0 real_cost = 302.442 SPARKS2_TS3-scwrl costs 0 real_cost = 317.253 SPARKS2_TS3 costs 0 real_cost = 318.364 SPARKS2_TS2-scwrl costs 0 real_cost = 313.325 SPARKS2_TS2 costs 0 real_cost = 314.143 SPARKS2_TS1-scwrl costs 0 real_cost = 324.006 SPARKS2_TS1 costs 0 real_cost = 324.937 SP4_TS5-scwrl costs 0 real_cost = 292.507 SP4_TS5 costs 0 real_cost = 294.426 SP4_TS4-scwrl costs 0 real_cost = 277.017 SP4_TS4 costs 0 real_cost = 275.736 SP4_TS3-scwrl costs 0 real_cost = 289.651 SP4_TS3 costs 0 real_cost = 288.858 SP4_TS2-scwrl costs 0 real_cost = 299.797 SP4_TS2 costs 0 real_cost = 296.493 SP4_TS1-scwrl costs 0 real_cost = 312.588 SP4_TS1 costs 0 real_cost = 314.045 SP3_TS5-scwrl costs 0 real_cost = 303.837 SP3_TS5 costs 0 real_cost = 305.968 SP3_TS4-scwrl costs 0 real_cost = 308.144 SP3_TS4 costs 0 real_cost = 310.003 SP3_TS3-scwrl costs 0 real_cost = 284.893 SP3_TS3 costs 0 real_cost = 285.512 SP3_TS2-scwrl costs 0 real_cost = 292.382 SP3_TS2 costs 0 real_cost = 292.975 SP3_TS1-scwrl costs 0 real_cost = 325.74 SP3_TS1 costs 0 real_cost = 326.459 SAM_T06_server_TS5-scwrl costs 0 real_cost = 415.247 SAM_T06_server_TS5 costs 0 real_cost = 407.615 SAM_T06_server_TS4-scwrl costs 0 real_cost = 435.362 SAM_T06_server_TS4 costs 0 real_cost = 439.136 SAM_T06_server_TS3-scwrl costs 0 real_cost = 423.119 SAM_T06_server_TS3 costs 0 real_cost = 426.376 SAM_T06_server_TS2-scwrl costs 0 real_cost = 426.539 SAM_T06_server_TS2 costs 0 real_cost = 429.837 SAM_T06_server_TS1-scwrl costs 0 real_cost = 262.162 SAM_T06_server_TS1 costs 0 real_cost = 262.954 SAM-T02_AL5-scwrl costs 0 real_cost = 400.472 SAM-T02_AL5 costs 0 real_cost = 436.465 SAM-T02_AL4-scwrl costs 0 real_cost = 366.793 SAM-T02_AL4 costs 0 real_cost = 415.317 SAM-T02_AL3-scwrl costs 0 real_cost = 426.54 SAM-T02_AL3 costs 0 real_cost = 456.602 SAM-T02_AL2-scwrl costs 0 real_cost = 435.363 SAM-T02_AL2 costs 0 real_cost = 468.615 SAM-T02_AL1-scwrl costs 0 real_cost = 423.14 SAM-T02_AL1 costs 0 real_cost = 451.628 ROKKY_TS5-scwrl costs 0 real_cost = 285.591 ROKKY_TS5 costs 0 real_cost = 364.476 ROKKY_TS4-scwrl costs 0 real_cost = 278.957 ROKKY_TS4 costs 0 real_cost = 357.314 ROKKY_TS3-scwrl costs 0 real_cost = 243.274 ROKKY_TS3 costs 0 real_cost = 324.04 ROKKY_TS2-scwrl costs 0 real_cost = 275.695 ROKKY_TS2 costs 0 real_cost = 353.767 ROKKY_TS1-scwrl costs 0 real_cost = 284.365 ROKKY_TS1 costs 0 real_cost = 363.347 ROBETTA_TS5-scwrl costs 0 real_cost = 303.296 ROBETTA_TS5 costs 0 real_cost = 303.321 ROBETTA_TS4-scwrl costs 0 real_cost = 276.104 ROBETTA_TS4 costs 0 real_cost = 279.893 ROBETTA_TS3-scwrl costs 0 real_cost = 274.371 ROBETTA_TS3 costs 0 real_cost = 275.844 ROBETTA_TS2-scwrl costs 0 real_cost = 270.656 ROBETTA_TS2 costs 0 real_cost = 270.717 ROBETTA_TS1-scwrl costs 0 real_cost = 266.658 ROBETTA_TS1 costs 0 real_cost = 266.484 RAPTOR_TS5-scwrl costs 0 real_cost = 299.612 RAPTOR_TS5 costs 0 real_cost = 299.243 RAPTOR_TS4-scwrl costs 0 real_cost = 324.173 RAPTOR_TS4 costs 0 real_cost = 324.32 RAPTOR_TS3-scwrl costs 0 real_cost = 293.901 RAPTOR_TS3 costs 0 real_cost = 294.896 RAPTOR_TS2-scwrl costs 0 real_cost = 308.43 RAPTOR_TS2 costs 0 real_cost = 305.552 RAPTOR_TS1-scwrl costs 0 real_cost = 310.625 RAPTOR_TS1 costs 0 real_cost = 309.789 RAPTORESS_TS5-scwrl costs 0 real_cost = 294.9 RAPTORESS_TS5 costs 0 real_cost = 296.822 RAPTORESS_TS4-scwrl costs 0 real_cost = 312.471 RAPTORESS_TS4 costs 0 real_cost = 314.682 RAPTORESS_TS3-scwrl costs 0 real_cost = 309.092 RAPTORESS_TS3 costs 0 real_cost = 311.215 RAPTORESS_TS2-scwrl costs 0 real_cost = 296.482 RAPTORESS_TS2 costs 0 real_cost = 298.205 RAPTORESS_TS1-scwrl costs 0 real_cost = 306.073 RAPTORESS_TS1 costs 0 real_cost = 306.955 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = 287.073 RAPTOR-ACE_TS5 costs 0 real_cost = 288.193 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = 320.161 RAPTOR-ACE_TS4 costs 0 real_cost = 323.507 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = 280.168 RAPTOR-ACE_TS3 costs 0 real_cost = 280.875 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = 337.668 RAPTOR-ACE_TS2 costs 0 real_cost = 337.734 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = 300.945 RAPTOR-ACE_TS1 costs 0 real_cost = 301.942 Pmodeller6_TS5-scwrl costs 0 real_cost = 307.967 Pmodeller6_TS5 costs 0 real_cost = 307.82 Pmodeller6_TS4-scwrl costs 0 real_cost = 312.246 Pmodeller6_TS4 costs 0 real_cost = 313.041 Pmodeller6_TS3-scwrl costs 0 real_cost = 312.246 Pmodeller6_TS3 costs 0 real_cost = 313.041 Pmodeller6_TS2-scwrl costs 0 real_cost = 258.208 Pmodeller6_TS2 costs 0 real_cost = 260.974 Pmodeller6_TS1-scwrl costs 0 real_cost = 286.687 Pmodeller6_TS1 costs 0 real_cost = 286.687 Phyre-1_TS1-scwrl costs 0 real_cost = 438.015 Phyre-1_TS1 costs 0 real_cost = 435.097 Pcons6_TS5-scwrl costs 0 real_cost = 284.663 Pcons6_TS5 costs 0 real_cost = 284.663 Pcons6_TS4-scwrl costs 0 real_cost = 282.696 Pcons6_TS4 costs 0 real_cost = 282.642 Pcons6_TS3-scwrl costs 0 real_cost = 302.102 Pcons6_TS3 costs 0 real_cost = 302.102 Pcons6_TS2-scwrl costs 0 real_cost = 324.504 Pcons6_TS2 costs 0 real_cost = 324.313 Pcons6_TS1-scwrl costs 0 real_cost = 266.658 Pcons6_TS1 costs 0 real_cost = 266.484 PROTINFO_TS5-scwrl costs 0 real_cost = 270.833 PROTINFO_TS5 costs 0 real_cost = 268.487 PROTINFO_TS4-scwrl costs 0 real_cost = 259.615 PROTINFO_TS4 costs 0 real_cost = 256.852 PROTINFO_TS3-scwrl costs 0 real_cost = 292.686 PROTINFO_TS3 costs 0 real_cost = 296.311 PROTINFO_TS2-scwrl costs 0 real_cost = 319.683 PROTINFO_TS2 costs 0 real_cost = 320.308 PROTINFO_TS1-scwrl costs 0 real_cost = 328.58 PROTINFO_TS1 costs 0 real_cost = 330.124 PROTINFO-AB_TS5-scwrl costs 0 real_cost = 261.485 PROTINFO-AB_TS5 costs 0 real_cost = 264.211 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 262.477 PROTINFO-AB_TS4 costs 0 real_cost = 260.989 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 280.728 PROTINFO-AB_TS3 costs 0 real_cost = 277.537 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 257.119 PROTINFO-AB_TS2 costs 0 real_cost = 261.513 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 259.615 PROTINFO-AB_TS1 costs 0 real_cost = 256.852 POMYSL_TS5-scwrl costs 0 real_cost = 327.285 POMYSL_TS5 costs 0 real_cost = 341.827 POMYSL_TS4-scwrl costs 0 real_cost = 334.858 POMYSL_TS4 costs 0 real_cost = 335.822 POMYSL_TS3-scwrl costs 0 real_cost = 327.608 POMYSL_TS3 costs 0 real_cost = 329.258 POMYSL_TS2-scwrl costs 0 real_cost = 463.053 POMYSL_TS1-scwrl costs 0 real_cost = 470.499 NN_PUT_lab_TS1-scwrl costs 0 real_cost = 303.076 NN_PUT_lab_TS1 costs 0 real_cost = 301.537 MetaTasser_TS5-scwrl costs 0 real_cost = 298.294 MetaTasser_TS5 costs 0 real_cost = 302.53 MetaTasser_TS4-scwrl costs 0 real_cost = 299.227 MetaTasser_TS4 costs 0 real_cost = 294.484 MetaTasser_TS3-scwrl costs 0 real_cost = 290.07 MetaTasser_TS3 costs 0 real_cost = 283.211 MetaTasser_TS2-scwrl costs 0 real_cost = 306.375 MetaTasser_TS2 costs 0 real_cost = 305.77 MetaTasser_TS1-scwrl costs 0 real_cost = 297.627 MetaTasser_TS1 costs 0 real_cost = 295.351 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 301.658 Ma-OPUS-server_TS5 costs 0 real_cost = 303.125 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 308.542 Ma-OPUS-server_TS4 costs 0 real_cost = 310.138 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = 287.441 Ma-OPUS-server_TS3 costs 0 real_cost = 292.199 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 298.969 Ma-OPUS-server_TS2 costs 0 real_cost = 299.803 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 307.342 Ma-OPUS-server_TS1 costs 0 real_cost = 308.222 LOOPP_TS5-scwrl costs 0 real_cost = 303.153 LOOPP_TS5 costs 0 real_cost = 303.798 LOOPP_TS4-scwrl costs 0 real_cost = 277.589 LOOPP_TS4 costs 0 real_cost = 276.804 LOOPP_TS3-scwrl costs 0 real_cost = 343.642 LOOPP_TS3 costs 0 real_cost = 345.366 LOOPP_TS2-scwrl costs 0 real_cost = 315.431 LOOPP_TS2 costs 0 real_cost = 316.139 LOOPP_TS1-scwrl costs 0 real_cost = 303.076 LOOPP_TS1 costs 0 real_cost = 301.537 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 341.519 Huber-Torda-Server_TS5 costs 0 real_cost = 378.909 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 355.635 Huber-Torda-Server_TS4 costs 0 real_cost = 395.7 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 358.573 Huber-Torda-Server_TS3 costs 0 real_cost = 407.83 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 393.997 Huber-Torda-Server_TS2 costs 0 real_cost = 412.802 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = 360.896 Huber-Torda-Server_TS1 costs 0 real_cost = 401.029 HHpred3_TS1-scwrl costs 0 real_cost = 297.894 HHpred3_TS1 costs 0 real_cost = 296.65 HHpred2_TS1-scwrl costs 0 real_cost = 297.894 HHpred2_TS1 costs 0 real_cost = 296.65 HHpred1_TS1-scwrl costs 0 real_cost = 321.489 HHpred1_TS1 costs 0 real_cost = 321.962 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = 311.733 GeneSilicoMetaServer_TS5 costs 0 real_cost = 319.021 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = 309.548 GeneSilicoMetaServer_TS4 costs 0 real_cost = 309.146 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = 294.576 GeneSilicoMetaServer_TS3 costs 0 real_cost = 294.356 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = 281.144 GeneSilicoMetaServer_TS2 costs 0 real_cost = 279.394 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = 325.263 GeneSilicoMetaServer_TS1 costs 0 real_cost = 325.834 FUNCTION_TS5-scwrl costs 0 real_cost = 327.725 FUNCTION_TS5 costs 0 real_cost = 327.378 FUNCTION_TS4-scwrl costs 0 real_cost = 312.046 FUNCTION_TS4 costs 0 real_cost = 312.872 FUNCTION_TS3-scwrl costs 0 real_cost = 321.921 FUNCTION_TS3 costs 0 real_cost = 321.473 FUNCTION_TS2-scwrl costs 0 real_cost = 324.869 FUNCTION_TS2 costs 0 real_cost = 324.018 FUNCTION_TS1-scwrl costs 0 real_cost = 321.476 FUNCTION_TS1 costs 0 real_cost = 324.297 FUGUE_AL5-scwrl costs 0 real_cost = 394.323 FUGUE_AL5 costs 0 real_cost = 437.859 FUGUE_AL4-scwrl costs 0 real_cost = 408.529 FUGUE_AL4 costs 0 real_cost = 408.529 FUGUE_AL3-scwrl costs 0 real_cost = 365.006 FUGUE_AL3 costs 0 real_cost = 444.164 FUGUE_AL2-scwrl costs 0 real_cost = 421.267 FUGUE_AL2 costs 0 real_cost = 421.267 FUGUE_AL1-scwrl costs 0 real_cost = 329.018 FUGUE_AL1 costs 0 real_cost = 401.457 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 316.815 FPSOLVER-SERVER_TS5 costs 0 real_cost = 318.283 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 291.698 FPSOLVER-SERVER_TS4 costs 0 real_cost = 292.953 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 320.05 FPSOLVER-SERVER_TS3 costs 0 real_cost = 321.498 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 319.142 FPSOLVER-SERVER_TS2 costs 0 real_cost = 320.622 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 314.741 FPSOLVER-SERVER_TS1 costs 0 real_cost = 315.832 FORTE2_AL5-scwrl costs 0 real_cost = 387.487 FORTE2_AL5 costs 0 real_cost = 449.498 FORTE2_AL4-scwrl costs 0 real_cost = 414.51 FORTE2_AL4 costs 0 real_cost = 414.51 FORTE2_AL3-scwrl costs 0 real_cost = 329.432 FORTE2_AL3 costs 0 real_cost = 405.853 FORTE2_AL2-scwrl costs 0 real_cost = 403.406 FORTE2_AL2 costs 0 real_cost = 457.699 FORTE2_AL1-scwrl costs 0 real_cost = 327.822 FORTE2_AL1 costs 0 real_cost = 408.598 FORTE1_AL5-scwrl costs 0 real_cost = 414.51 FORTE1_AL5 costs 0 real_cost = 414.51 FORTE1_AL4-scwrl costs 0 real_cost = 426.27 FORTE1_AL4 costs 0 real_cost = 426.27 FORTE1_AL3-scwrl costs 0 real_cost = 329.432 FORTE1_AL3 costs 0 real_cost = 405.853 FORTE1_AL2-scwrl costs 0 real_cost = 403.406 FORTE1_AL2 costs 0 real_cost = 457.699 FORTE1_AL1-scwrl costs 0 real_cost = 327.822 FORTE1_AL1 costs 0 real_cost = 408.598 FOLDpro_TS5-scwrl costs 0 real_cost = 313.595 FOLDpro_TS5 costs 0 real_cost = 313.976 FOLDpro_TS4-scwrl costs 0 real_cost = 317.131 FOLDpro_TS4 costs 0 real_cost = 317.575 FOLDpro_TS3-scwrl costs 0 real_cost = 344.543 FOLDpro_TS3 costs 0 real_cost = 344.419 FOLDpro_TS2-scwrl costs 0 real_cost = 319.878 FOLDpro_TS2 costs 0 real_cost = 321.699 FOLDpro_TS1-scwrl costs 0 real_cost = 320.967 FOLDpro_TS1 costs 0 real_cost = 320.793 FAMS_TS5-scwrl costs 0 real_cost = 321.762 FAMS_TS5 costs 0 real_cost = 324.363 FAMS_TS4-scwrl costs 0 real_cost = 306.853 FAMS_TS4 costs 0 real_cost = 309.247 FAMS_TS3-scwrl costs 0 real_cost = 305.291 FAMS_TS3 costs 0 real_cost = 310.26 FAMS_TS2-scwrl costs 0 real_cost = 312.046 FAMS_TS2 costs 0 real_cost = 312.872 FAMS_TS1-scwrl costs 0 real_cost = 307.261 FAMS_TS1 costs 0 real_cost = 305.865 FAMSD_TS5-scwrl costs 0 real_cost = 337.85 FAMSD_TS5 costs 0 real_cost = 335.856 FAMSD_TS4-scwrl costs 0 real_cost = 325.144 FAMSD_TS4 costs 0 real_cost = 323.762 FAMSD_TS3-scwrl costs 0 real_cost = 319.436 FAMSD_TS3 costs 0 real_cost = 318.842 FAMSD_TS2-scwrl costs 0 real_cost = 321.762 FAMSD_TS2 costs 0 real_cost = 324.363 FAMSD_TS1-scwrl costs 0 real_cost = 313.865 FAMSD_TS1 costs 0 real_cost = 313.655 Distill_TS5-scwrl costs 0 real_cost = 363.605 Distill_TS4-scwrl costs 0 real_cost = 365.212 Distill_TS3-scwrl costs 0 real_cost = 372.246 Distill_TS2-scwrl costs 0 real_cost = 361.222 Distill_TS1-scwrl costs 0 real_cost = 371.048 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 385.214 CaspIta-FOX_TS5 costs 0 real_cost = 377.361 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 331.587 CaspIta-FOX_TS4 costs 0 real_cost = 331.632 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 396.979 CaspIta-FOX_TS3 costs 0 real_cost = 383.514 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 400.067 CaspIta-FOX_TS2 costs 0 real_cost = 399.779 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 362.446 CaspIta-FOX_TS1 costs 0 real_cost = 360.759 CIRCLE_TS5-scwrl costs 0 real_cost = 306.853 CIRCLE_TS5 costs 0 real_cost = 309.247 CIRCLE_TS4-scwrl costs 0 real_cost = 315.784 CIRCLE_TS4 costs 0 real_cost = 316.38 CIRCLE_TS3-scwrl costs 0 real_cost = 293.027 CIRCLE_TS3 costs 0 real_cost = 296.062 CIRCLE_TS2-scwrl costs 0 real_cost = 299.937 CIRCLE_TS2 costs 0 real_cost = 306.366 CIRCLE_TS1-scwrl costs 0 real_cost = 305.291 CIRCLE_TS1 costs 0 real_cost = 310.26 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = 291.793 Bilab-ENABLE_TS5 costs 0 real_cost = 292.242 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = 290.779 Bilab-ENABLE_TS4 costs 0 real_cost = 290.789 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = 282.161 Bilab-ENABLE_TS3 costs 0 real_cost = 283.887 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = 286.074 Bilab-ENABLE_TS2 costs 0 real_cost = 286.012 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = 290.199 Bilab-ENABLE_TS1 costs 0 real_cost = 290.394 BayesHH_TS1-scwrl costs 0 real_cost = 308.676 BayesHH_TS1 costs 0 real_cost = 300.446 ABIpro_TS5-scwrl costs 0 real_cost = 297.511 ABIpro_TS5 costs 0 real_cost = 297.511 ABIpro_TS4-scwrl costs 0 real_cost = 255.766 ABIpro_TS4 costs 0 real_cost = 255.764 ABIpro_TS3-scwrl costs 0 real_cost = 277.45 ABIpro_TS3 costs 0 real_cost = 277.411 ABIpro_TS2-scwrl costs 0 real_cost = 292.238 ABIpro_TS2 costs 0 real_cost = 291.72 ABIpro_TS1-scwrl costs 0 real_cost = 277.676 ABIpro_TS1 costs 0 real_cost = 277.044 3Dpro_TS5-scwrl costs 0 real_cost = 334.593 3Dpro_TS5 costs 0 real_cost = 334.535 3Dpro_TS4-scwrl costs 0 real_cost = 324.378 3Dpro_TS4 costs 0 real_cost = 322.054 3Dpro_TS3-scwrl costs 0 real_cost = 337.182 3Dpro_TS3 costs 0 real_cost = 337.472 3Dpro_TS2-scwrl costs 0 real_cost = 339.136 3Dpro_TS2 costs 0 real_cost = 339.356 3Dpro_TS1-scwrl costs 0 real_cost = 313.045 3Dpro_TS1 costs 0 real_cost = 312.793 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 344.884 3D-JIGSAW_TS5 costs 0 real_cost = 340.454 3D-JIGSAW_TS4-scwrl costs 0 real_cost = 327.564 3D-JIGSAW_TS4 costs 0 real_cost = 316.095 3D-JIGSAW_TS3-scwrl costs 0 real_cost = 299.913 3D-JIGSAW_TS3 costs 0 real_cost = 303.715 3D-JIGSAW_TS2-scwrl costs 0 real_cost = 273.781 3D-JIGSAW_TS2 costs 0 real_cost = 277.046 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 345.467 3D-JIGSAW_TS1 costs 0 real_cost = 337.172 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = 333.476 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = 330.277 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = 328.287 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = 321.82 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 309.05 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 309.05 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = 310.833 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = 310.833 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = 271.149 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = 270.904 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 318.143 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 318.143 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 279.965 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = 278.823 T0314.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 322.439 T0314.try9-opt2.pdb.gz costs 0 real_cost = 323.034 T0314.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = 322.415 T0314.try9-opt1.pdb.gz costs 0 real_cost = 323.474 T0314.try9-opt1-scwrl.pdb.gz costs 0 real_cost = 323.464 T0314.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 321.066 T0314.try8-opt2.pdb.gz costs 0 real_cost = 321.741 T0314.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = 319.977 T0314.try8-opt1.pdb.gz costs 0 real_cost = 320.807 T0314.try8-opt1-scwrl.pdb.gz costs 0 real_cost = 320.72 T0314.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 327.996 T0314.try7-opt2.pdb.gz costs 0 real_cost = 328.048 T0314.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = 326.975 T0314.try7-opt1.pdb.gz costs 0 real_cost = 327.503 T0314.try7-opt1-scwrl.pdb.gz costs 0 real_cost = 327.595 T0314.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 314.779 T0314.try6-opt2.pdb.gz costs 0 real_cost = 314.845 T0314.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = 314.593 T0314.try6-opt1.pdb.gz costs 0 real_cost = 314.502 T0314.try6-opt1-scwrl.pdb.gz costs 0 real_cost = 314.011 T0314.try50-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 302.692 T0314.try50-opt2.pdb.gz costs 0 real_cost = 302.66 T0314.try50-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 301.637 T0314.try50-opt2.gromacs0.pdb.gz costs 0 real_cost = 301.842 T0314.try50-opt1.pdb.gz costs 0 real_cost = 300.495 T0314.try50-opt1-scwrl.pdb.gz costs 0 real_cost = 299.461 T0314.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 328.255 T0314.try5-opt2.pdb.gz costs 0 real_cost = 328.029 T0314.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = 326.338 T0314.try5-opt1.pdb.gz costs 0 real_cost = 328.358 T0314.try5-opt1-scwrl.pdb.gz costs 0 real_cost = 328.133 T0314.try49-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 263.279 T0314.try49-opt2.pdb.gz costs 0 real_cost = 265.923 T0314.try49-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 266.106 T0314.try49-opt2.gromacs0.pdb.gz costs 0 real_cost = 268.661 T0314.try49-opt1.pdb.gz costs 0 real_cost = 266.2 T0314.try49-opt1-scwrl.pdb.gz costs 0 real_cost = 263.525 T0314.try48-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 313.243 T0314.try48-opt2.pdb.gz costs 0 real_cost = 313.855 T0314.try48-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 313.858 T0314.try48-opt2.gromacs0.pdb.gz costs 0 real_cost = 314.23 T0314.try48-opt1.pdb.gz costs 0 real_cost = 313.297 T0314.try48-opt1-scwrl.pdb.gz costs 0 real_cost = 312.496 T0314.try47-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 264.9 T0314.try47-opt2.pdb.gz costs 0 real_cost = 267.351 T0314.try47-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 265.784 T0314.try47-opt2.gromacs0.pdb.gz costs 0 real_cost = 268.198 T0314.try47-opt1.pdb.gz costs 0 real_cost = 269.429 T0314.try47-opt1-scwrl.pdb.gz costs 0 real_cost = 265.567 T0314.try46-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 315.628 T0314.try46-opt2.pdb.gz costs 0 real_cost = 315.596 T0314.try46-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 315.263 T0314.try46-opt2.gromacs0.pdb.gz costs 0 real_cost = 314.815 T0314.try46-opt1.pdb.gz costs 0 real_cost = 315.653 T0314.try46-opt1-scwrl.pdb.gz costs 0 real_cost = 314.981 T0314.try45-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 277.129 T0314.try45-opt2.pdb.gz costs 0 real_cost = 277.62 T0314.try45-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 278.118 T0314.try45-opt2.gromacs0.pdb.gz costs 0 real_cost = 277.718 T0314.try45-opt1.pdb.gz costs 0 real_cost = 276.696 T0314.try45-opt1-scwrl.pdb.gz costs 0 real_cost = 276.291 T0314.try44-opt2.pdb.gz costs 0 real_cost = 308.544 T0314.try44-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 309.173 T0314.try44-opt2.gromacs0.pdb.gz costs 0 real_cost = 309.858 T0314.try44-opt2-fix-loop.pdb.gz costs 0 real_cost = 316.769 T0314.try44-opt1.pdb.gz costs 0 real_cost = 308.583 T0314.try44-opt1-scwrl.pdb.gz costs 0 real_cost = 308.206 T0314.try43-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 305.619 T0314.try43-opt2.pdb.gz costs 0 real_cost = 305.8 T0314.try43-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 305.579 T0314.try43-opt2.gromacs0.pdb.gz costs 0 real_cost = 305.664 T0314.try43-opt1.pdb.gz costs 0 real_cost = 305.114 T0314.try43-opt1-scwrl.pdb.gz costs 0 real_cost = 304.651 T0314.try42-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 307.596 T0314.try42-opt2.pdb.gz costs 0 real_cost = 308.405 T0314.try42-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 310.24 T0314.try42-opt2.gromacs0.pdb.gz costs 0 real_cost = 311.83 T0314.try42-opt1.pdb.gz costs 0 real_cost = 308.086 T0314.try42-opt1-scwrl.pdb.gz costs 0 real_cost = 308.197 T0314.try41-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 311.105 T0314.try41-opt2.pdb.gz costs 0 real_cost = 311.436 T0314.try41-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 315.395 T0314.try41-opt2.gromacs0.pdb.gz costs 0 real_cost = 315.701 T0314.try41-opt1.pdb.gz costs 0 real_cost = 315.218 T0314.try41-opt1-scwrl.pdb.gz costs 0 real_cost = 315.054 T0314.try40-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 321.207 T0314.try40-opt2.pdb.gz costs 0 real_cost = 321.485 T0314.try40-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 322.494 T0314.try40-opt2.gromacs0.pdb.gz costs 0 real_cost = 322.886 T0314.try40-opt1.pdb.gz costs 0 real_cost = 321.895 T0314.try40-opt1-scwrl.pdb.gz costs 0 real_cost = 321.832 T0314.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 293.305 T0314.try4-opt2.pdb.gz costs 0 real_cost = 294.161 T0314.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = 297.336 T0314.try4-opt1.pdb.gz costs 0 real_cost = 294.961 T0314.try4-opt1-scwrl.pdb.gz costs 0 real_cost = 294.31 T0314.try39-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 308.708 T0314.try39-opt2.pdb.gz costs 0 real_cost = 308.656 T0314.try39-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 306.397 T0314.try39-opt2.gromacs0.pdb.gz costs 0 real_cost = 306.212 T0314.try39-opt1.pdb.gz costs 0 real_cost = 309.716 T0314.try39-opt1-scwrl.pdb.gz costs 0 real_cost = 309.446 T0314.try38-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 316.935 T0314.try38-opt2.pdb.gz costs 0 real_cost = 317.104 T0314.try38-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 312.646 T0314.try38-opt2.gromacs0.pdb.gz costs 0 real_cost = 313.239 T0314.try38-opt1.pdb.gz costs 0 real_cost = 314.825 T0314.try38-opt1-scwrl.pdb.gz costs 0 real_cost = 314.583 T0314.try37-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 298.285 T0314.try37-opt2.pdb.gz costs 0 real_cost = 298.211 T0314.try37-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 301.435 T0314.try37-opt2.gromacs0.pdb.gz costs 0 real_cost = 301.449 T0314.try37-opt1.pdb.gz costs 0 real_cost = 298.285 T0314.try37-opt1-scwrl.pdb.gz costs 0 real_cost = 298.19 T0314.try36-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 272.997 T0314.try36-opt2.pdb.gz costs 0 real_cost = 273.444 T0314.try36-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 271.991 T0314.try36-opt2.gromacs0.pdb.gz costs 0 real_cost = 271.359 T0314.try36-opt1.pdb.gz costs 0 real_cost = 274.541 T0314.try36-opt1-scwrl.pdb.gz costs 0 real_cost = 274.494 T0314.try35-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 322.293 T0314.try35-opt2.pdb.gz costs 0 real_cost = 322.496 T0314.try35-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 322.065 T0314.try35-opt2.gromacs0.pdb.gz costs 0 real_cost = 322.333 T0314.try35-opt1.pdb.gz costs 0 real_cost = 321.492 T0314.try35-opt1-scwrl.pdb.gz costs 0 real_cost = 321.365 T0314.try34-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 266.365 T0314.try34-opt2.pdb.gz costs 0 real_cost = 271.966 T0314.try34-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 271.884 T0314.try34-opt2.gromacs0.pdb.gz costs 0 real_cost = 274.542 T0314.try34-opt1.pdb.gz costs 0 real_cost = 269.905 T0314.try34-opt1-scwrl.pdb.gz costs 0 real_cost = 267.583 T0314.try33-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 304.039 T0314.try33-opt2.pdb.gz costs 0 real_cost = 303.993 T0314.try33-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 304.788 T0314.try33-opt2.gromacs0.pdb.gz costs 0 real_cost = 305.012 T0314.try33-opt2-fix-loop.pdb.gz costs 0 real_cost = 302.589 T0314.try33-opt1.pdb.gz costs 0 real_cost = 304.951 T0314.try33-opt1-scwrl.pdb.gz costs 0 real_cost = 304.79 T0314.try32-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 315.945 T0314.try32-opt2.pdb.gz costs 0 real_cost = 316.058 T0314.try32-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 316.844 T0314.try32-opt2.gromacs0.pdb.gz costs 0 real_cost = 316.675 T0314.try32-opt1.pdb.gz costs 0 real_cost = 315.968 T0314.try32-opt1-scwrl.pdb.gz costs 0 real_cost = 315.543 T0314.try31-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 256.547 T0314.try31-opt2.pdb.gz costs 0 real_cost = 259.619 T0314.try31-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 261.564 T0314.try31-opt2.gromacs0.pdb.gz costs 0 real_cost = 262.681 T0314.try31-opt1.pdb.gz costs 0 real_cost = 261.263 T0314.try31-opt1-scwrl.pdb.gz costs 0 real_cost = 258.947 T0314.try30-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 260.646 T0314.try30-opt2.pdb.gz costs 0 real_cost = 263.995 T0314.try30-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 266.355 T0314.try30-opt2.gromacs0.pdb.gz costs 0 real_cost = 267.933 T0314.try30-opt2-fix-loop.pdb.gz costs 0 real_cost = 264.473 T0314.try30-opt1.pdb.gz costs 0 real_cost = 262.44 T0314.try30-opt1-scwrl.pdb.gz costs 0 real_cost = 260.466 T0314.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 307.689 T0314.try3-opt2.pdb.gz costs 0 real_cost = 308.83 T0314.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 308.941 T0314.try3-opt1.pdb.gz costs 0 real_cost = 308.336 T0314.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 307.397 T0314.try29-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 315.573 T0314.try29-opt2.pdb.gz costs 0 real_cost = 316.028 T0314.try29-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 316.038 T0314.try29-opt2.gromacs0.pdb.gz costs 0 real_cost = 316.558 T0314.try29-opt1.pdb.gz costs 0 real_cost = 316.319 T0314.try29-opt1-scwrl.pdb.gz costs 0 real_cost = 316.074 T0314.try28-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 323.65 T0314.try28-opt2.pdb.gz costs 0 real_cost = 323.941 T0314.try28-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 327.077 T0314.try28-opt2.gromacs0.pdb.gz costs 0 real_cost = 327.46 T0314.try28-opt1.pdb.gz costs 0 real_cost = 323.003 T0314.try28-opt1-scwrl.pdb.gz costs 0 real_cost = 323.121 T0314.try27-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 312.811 T0314.try27-opt2.pdb.gz costs 0 real_cost = 312.875 T0314.try27-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 314.118 T0314.try27-opt2.gromacs0.pdb.gz costs 0 real_cost = 314.362 T0314.try27-opt1.pdb.gz costs 0 real_cost = 313.191 T0314.try27-opt1-scwrl.pdb.gz costs 0 real_cost = 312.413 T0314.try26-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 310.996 T0314.try26-opt2.pdb.gz costs 0 real_cost = 311.02 T0314.try26-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 309.434 T0314.try26-opt2.gromacs0.pdb.gz costs 0 real_cost = 309.38 T0314.try26-opt1.pdb.gz costs 0 real_cost = 310.613 T0314.try26-opt1-scwrl.pdb.gz costs 0 real_cost = 311.002 T0314.try25-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 307.842 T0314.try25-opt2.pdb.gz costs 0 real_cost = 308.16 T0314.try25-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 308.502 T0314.try25-opt2.gromacs0.pdb.gz costs 0 real_cost = 308.886 T0314.try25-opt1.pdb.gz costs 0 real_cost = 299.367 T0314.try25-opt1-scwrl.pdb.gz costs 0 real_cost = 298.611 T0314.try24-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 319.934 T0314.try24-opt2.pdb.gz costs 0 real_cost = 319.789 T0314.try24-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 320.744 T0314.try24-opt2.gromacs0.pdb.gz costs 0 real_cost = 321.029 T0314.try24-opt1.pdb.gz costs 0 real_cost = 318.915 T0314.try24-opt1-scwrl.pdb.gz costs 0 real_cost = 318.795 T0314.try23-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 305.707 T0314.try23-opt2.pdb.gz costs 0 real_cost = 305.933 T0314.try23-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 306.927 T0314.try23-opt2.gromacs0.pdb.gz costs 0 real_cost = 308.071 T0314.try23-opt1.pdb.gz costs 0 real_cost = 316.899 T0314.try23-opt1-scwrl.pdb.gz costs 0 real_cost = 315.66 T0314.try22-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 321.201 T0314.try22-opt2.pdb.gz costs 0 real_cost = 320.938 T0314.try22-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 322.596 T0314.try22-opt2.gromacs0.pdb.gz costs 0 real_cost = 322.651 T0314.try22-opt1.pdb.gz costs 0 real_cost = 320.567 T0314.try22-opt1-scwrl.pdb.gz costs 0 real_cost = 320.313 T0314.try21-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 314.176 T0314.try21-opt2.pdb.gz costs 0 real_cost = 314.638 T0314.try21-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 317.541 T0314.try21-opt2.gromacs0.pdb.gz costs 0 real_cost = 317.657 T0314.try21-opt1.pdb.gz costs 0 real_cost = 315.314 T0314.try21-opt1-scwrl.pdb.gz costs 0 real_cost = 314.853 T0314.try20-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 319.519 T0314.try20-opt2.pdb.gz costs 0 real_cost = 319.63 T0314.try20-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 319.374 T0314.try20-opt2.gromacs0.pdb.gz costs 0 real_cost = 319.486 T0314.try20-opt2-moved-strand-and-helix.pdb.gz costs 0 real_cost = 314.954 T0314.try20-opt2-fix-loop.pdb.gz costs 0 real_cost = 317.224 T0314.try20-opt2-fix-loop-2nd-try.pdb.gz costs 0 real_cost = 313.876 T0314.try20-opt1.pdb.gz costs 0 real_cost = 319.072 T0314.try20-opt1-scwrl.pdb.gz costs 0 real_cost = 318.89 T0314.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 277.971 T0314.try2-opt2.pdb.gz costs 0 real_cost = 278.445 T0314.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = 280.842 T0314.try2-opt1.pdb.gz costs 0 real_cost = 276.406 T0314.try2-opt1-scwrl.pdb.gz costs 0 real_cost = 276.238 T0314.try19-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 302.044 T0314.try19-opt2.pdb.gz costs 0 real_cost = 303.433 T0314.try19-opt2.gromacs0.pdb.gz costs 0 real_cost = 304.602 T0314.try19-opt1.pdb.gz costs 0 real_cost = 303.787 T0314.try19-opt1-scwrl.pdb.gz costs 0 real_cost = 301.926 T0314.try18-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 310.798 T0314.try18-opt2.pdb.gz costs 0 real_cost = 310.726 T0314.try18-opt2.gromacs0.pdb.gz costs 0 real_cost = 312.443 T0314.try18-opt1.pdb.gz costs 0 real_cost = 312.945 T0314.try18-opt1-scwrl.pdb.gz costs 0 real_cost = 312.567 T0314.try17-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 321.569 T0314.try17-opt2.pdb.gz costs 0 real_cost = 321.934 T0314.try17-opt2.gromacs0.pdb.gz costs 0 real_cost = 321.504 T0314.try17-opt1.pdb.gz costs 0 real_cost = 321.231 T0314.try17-opt1-scwrl.pdb.gz costs 0 real_cost = 321.112 T0314.try16-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 302.529 T0314.try16-opt2.pdb.gz costs 0 real_cost = 304.654 T0314.try16-opt2.gromacs0.pdb.gz costs 0 real_cost = 305.173 T0314.try16-opt1.pdb.gz costs 0 real_cost = 302.21 T0314.try16-opt1-scwrl.pdb.gz costs 0 real_cost = 301.234 T0314.try15-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 290.827 T0314.try15-opt2.pdb.gz costs 0 real_cost = 291.856 T0314.try15-opt2.gromacs0.pdb.gz costs 0 real_cost = 296.924 T0314.try15-opt1.pdb.gz costs 0 real_cost = 292.566 T0314.try15-opt1-scwrl.pdb.gz costs 0 real_cost = 292.11 T0314.try14-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 280.085 T0314.try14-opt2.pdb.gz costs 0 real_cost = 283.849 T0314.try14-opt2.gromacs0.pdb.gz costs 0 real_cost = 284.383 T0314.try14-opt1.pdb.gz costs 0 real_cost = 281.897 T0314.try14-opt1-scwrl.pdb.gz costs 0 real_cost = 282.388 T0314.try13-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 262.102 T0314.try13-opt2.pdb.gz costs 0 real_cost = 262.752 T0314.try13-opt2.gromacs0.pdb.gz costs 0 real_cost = 265.828 T0314.try13-opt2-moved-strand-and-helices.pdb.gz costs 0 real_cost = 266.795 T0314.try13-opt1.pdb.gz costs 0 real_cost = 261.547 T0314.try13-opt1-scwrl.pdb.gz costs 0 real_cost = 261.28 T0314.try12-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 319.061 T0314.try12-opt2.pdb.gz costs 0 real_cost = 320.686 T0314.try12-opt2.gromacs0.pdb.gz costs 0 real_cost = 321.226 T0314.try12-opt1.pdb.gz costs 0 real_cost = 321.919 T0314.try12-opt1-scwrl.pdb.gz costs 0 real_cost = 319.735 T0314.try11-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 319.395 T0314.try11-opt2.pdb.gz costs 0 real_cost = 320.168 T0314.try11-opt2.gromacs0.pdb.gz costs 0 real_cost = 320.013 T0314.try11-opt1.pdb.gz costs 0 real_cost = 318.971 T0314.try11-opt1-scwrl.pdb.gz costs 0 real_cost = 318.419 T0314.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 328.648 T0314.try10-opt2.pdb.gz costs 0 real_cost = 328.433 T0314.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = 325.045 T0314.try10-opt1.pdb.gz costs 0 real_cost = 327.743 T0314.try10-opt1-scwrl.pdb.gz costs 0 real_cost = 327.114 T0314.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 298.419 T0314.try1-opt2.pdb.gz costs 0 real_cost = 297.989 T0314.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 297.02 T0314.try1-opt1.pdb.gz costs 0 real_cost = 296.523 T0314.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 296.335 ../model5.ts-submitted costs 0 real_cost = 283.628 ../model4.ts-submitted costs 0 real_cost = 322.496 ../model3.ts-submitted costs 0 real_cost = 315.158 ../model2.ts-submitted costs 0 real_cost = 264.072 ../model1.ts-submitted costs 0 real_cost = 313.894 align5 costs 0 real_cost = 378.486 align4 costs 0 real_cost = 418.564 align3 costs 0 real_cost = 401.434 align2 costs 0 real_cost = 399.25 align1 costs 0 real_cost = 372.093 T0314.try1-opt2.pdb costs 0 real_cost = 297.989 model5-scwrl costs 0 real_cost = 282.832 model5.ts-submitted costs 0 real_cost = 283.628 model4-scwrl costs 0 real_cost = 322.304 model4.ts-submitted costs 0 real_cost = 322.496 model3-scwrl costs 0 real_cost = 314.571 model3.ts-submitted costs 0 real_cost = 315.158 model2-scwrl costs 0 real_cost = 259.286 model2.ts-submitted costs 0 real_cost = 264.072 model1-scwrl costs 0 real_cost = 313.021 model1.ts-submitted costs 0 real_cost = 313.894 2hg6A costs 0 real_cost = -895 # command:CPU_time= 284.602 sec, elapsed time= 520.373 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty rm -f decoys/evaluate_1.rdb sed -e s/XXX0000/T0314/ -e s/START_COL/1/ \ -e s/REAL_PDB/2hg6A/ \ -e s/_domain/_1/ \ -e s/read-pdb/read-pdb+servers/ \ -e 's/ReadConformPDBids/# ReadConformPDBids/' \ -e 's/# ReadConformPDB /ReadConformPDB /' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1174938600 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.85711 sec, elapsed time= 5.89521 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.9341 sec, elapsed time= 5.98639 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0314 numbered 1 through 106 Created new target T0314 from T0314.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:# ReadConformPDB reading from PDB file T0314_1.real.pdb looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.13276 sec, elapsed time= 8.20725 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 99 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -20.1456 # GDT_score(maxd=8,maxw=2.9)= -17.6457 # GDT_score(maxd=8,maxw=3.2)= -16.7196 # GDT_score(maxd=8,maxw=3.5)= -15.9284 # GDT_score(maxd=10,maxw=3.8)= -18.4175 # GDT_score(maxd=10,maxw=4)= -17.813 # GDT_score(maxd=10,maxw=4.2)= -17.1959 # GDT_score(maxd=12,maxw=4.3)= -19.6776 # GDT_score(maxd=12,maxw=4.5)= -19.0188 # GDT_score(maxd=12,maxw=4.7)= -18.4161 # GDT_score(maxd=14,maxw=5.2)= -19.2327 # GDT_score(maxd=14,maxw=5.5)= -18.3955 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.2370000e+03 rmsd (weighted)= 1.6434327e+01 (unweighted)= 1.9482130e+01 superimposing iter= 1 total_weight= 1.7843397e+03 rmsd (weighted)= 1.0931861e+01 (unweighted)= 1.9425509e+01 superimposing iter= 2 total_weight= 1.0265860e+03 rmsd (weighted)= 9.7021720e+00 (unweighted)= 1.9447806e+01 superimposing iter= 3 total_weight= 9.1171840e+02 rmsd (weighted)= 9.1705044e+00 (unweighted)= 1.9481750e+01 superimposing iter= 4 total_weight= 8.6156685e+02 rmsd (weighted)= 8.9323741e+00 (unweighted)= 1.9505726e+01 superimposing iter= 5 total_weight= 8.3658111e+02 rmsd (weighted)= 8.8344511e+00 (unweighted)= 1.9521321e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_897843419.pdb -s /var/tmp/to_scwrl_897843419.seq -o /var/tmp/from_scwrl_897843419.pdb > /var/tmp/scwrl_897843419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_897843419.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -24.0291 # GDT_score(maxd=8,maxw=2.9)= -21.8883 # GDT_score(maxd=8,maxw=3.2)= -20.5644 # GDT_score(maxd=8,maxw=3.5)= -19.4675 # GDT_score(maxd=10,maxw=3.8)= -22.5588 # GDT_score(maxd=10,maxw=4)= -21.8192 # GDT_score(maxd=10,maxw=4.2)= -21.15 # GDT_score(maxd=12,maxw=4.3)= -24.0523 # GDT_score(maxd=12,maxw=4.5)= -23.3285 # GDT_score(maxd=12,maxw=4.7)= -22.6258 # GDT_score(maxd=14,maxw=5.2)= -23.5661 # GDT_score(maxd=14,maxw=5.5)= -22.6397 # command:# request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1607871303.pdb -s /var/tmp/to_scwrl_1607871303.seq -o /var/tmp/from_scwrl_1607871303.pdb > /var/tmp/scwrl_1607871303.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1607871303.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -16.7476 # GDT_score(maxd=8,maxw=2.9)= -14.1196 # GDT_score(maxd=8,maxw=3.2)= -13.342 # GDT_score(maxd=8,maxw=3.5)= -12.6977 # GDT_score(maxd=10,maxw=3.8)= -15.1499 # GDT_score(maxd=10,maxw=4)= -14.6837 # GDT_score(maxd=10,maxw=4.2)= -14.2334 # GDT_score(maxd=12,maxw=4.3)= -16.7111 # GDT_score(maxd=12,maxw=4.5)= -16.1927 # GDT_score(maxd=12,maxw=4.7)= -15.7102 # GDT_score(maxd=14,maxw=5.2)= -17.159 # GDT_score(maxd=14,maxw=5.5)= -16.4879 # command:# request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_878822685.pdb -s /var/tmp/to_scwrl_878822685.seq -o /var/tmp/from_scwrl_878822685.pdb > /var/tmp/scwrl_878822685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_878822685.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -19.4175 # GDT_score(maxd=8,maxw=2.9)= -18.1094 # GDT_score(maxd=8,maxw=3.2)= -17.0876 # GDT_score(maxd=8,maxw=3.5)= -16.1222 # GDT_score(maxd=10,maxw=3.8)= -17.9941 # GDT_score(maxd=10,maxw=4)= -17.3857 # GDT_score(maxd=10,maxw=4.2)= -16.8352 # GDT_score(maxd=12,maxw=4.3)= -19.0696 # GDT_score(maxd=12,maxw=4.5)= -18.4809 # GDT_score(maxd=12,maxw=4.7)= -17.9371 # GDT_score(maxd=14,maxw=5.2)= -19.0031 # GDT_score(maxd=14,maxw=5.5)= -18.2313 # command:# request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1482880732.pdb -s /var/tmp/to_scwrl_1482880732.seq -o /var/tmp/from_scwrl_1482880732.pdb > /var/tmp/scwrl_1482880732.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1482880732.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -19.1748 # GDT_score(maxd=8,maxw=2.9)= -17.2621 # GDT_score(maxd=8,maxw=3.2)= -16.5014 # GDT_score(maxd=8,maxw=3.5)= -15.836 # GDT_score(maxd=10,maxw=3.8)= -18.0237 # GDT_score(maxd=10,maxw=4)= -17.5493 # GDT_score(maxd=10,maxw=4.2)= -17.0834 # GDT_score(maxd=12,maxw=4.3)= -19.4867 # GDT_score(maxd=12,maxw=4.5)= -18.9658 # GDT_score(maxd=12,maxw=4.7)= -18.4505 # GDT_score(maxd=14,maxw=5.2)= -19.487 # GDT_score(maxd=14,maxw=5.5)= -18.7436 # command:# request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_679379983.pdb -s /var/tmp/to_scwrl_679379983.seq -o /var/tmp/from_scwrl_679379983.pdb > /var/tmp/scwrl_679379983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_679379983.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0314.try1-opt2.pdb looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -20.6311 # GDT_score(maxd=8,maxw=2.9)= -18.0737 # GDT_score(maxd=8,maxw=3.2)= -17.1581 # GDT_score(maxd=8,maxw=3.5)= -16.2152 # GDT_score(maxd=10,maxw=3.8)= -18.7904 # GDT_score(maxd=10,maxw=4)= -18.1422 # GDT_score(maxd=10,maxw=4.2)= -17.5557 # GDT_score(maxd=12,maxw=4.3)= -20.2934 # GDT_score(maxd=12,maxw=4.5)= -19.6503 # GDT_score(maxd=12,maxw=4.7)= -19.062 # GDT_score(maxd=14,maxw=5.2)= -20.2553 # GDT_score(maxd=14,maxw=5.5)= -19.4153 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.2370000e+03 rmsd (weighted)= 1.4919742e+01 (unweighted)= 1.8841050e+01 superimposing iter= 1 total_weight= 1.8990944e+03 rmsd (weighted)= 9.4911752e+00 (unweighted)= 1.8861529e+01 superimposing iter= 2 total_weight= 1.0765899e+03 rmsd (weighted)= 8.1756365e+00 (unweighted)= 1.8887711e+01 superimposing iter= 3 total_weight= 9.3204743e+02 rmsd (weighted)= 7.6105129e+00 (unweighted)= 1.8918011e+01 superimposing iter= 4 total_weight= 8.9260448e+02 rmsd (weighted)= 7.2649408e+00 (unweighted)= 1.8945727e+01 superimposing iter= 5 total_weight= 8.6125952e+02 rmsd (weighted)= 7.0720897e+00 (unweighted)= 1.8967788e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0314.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0314)F21.C and (T0314)G26.C only 0.0000000e+00 apart, marking (T0314)G26.C as missing WARNING: atoms too close: (T0314)N22.N and (T0314)R27.N only 0.0000000e+00 apart, marking (T0314)N22.N as missing WARNING: atoms too close: (T0314)N22.CA and (T0314)R27.CA only 0.0000000e+00 apart, marking (T0314)N22.CA as missing WARNING: atoms too close: (T0314)E51.C and (T0314)R58.C only 0.0000000e+00 apart, marking (T0314)R58.C as missing WARNING: atoms too close: (T0314)F52.N and (T0314)D59.N only 0.0000000e+00 apart, marking (T0314)F52.N as missing WARNING: atoms too close: (T0314)F52.CA and (T0314)D59.CA only 0.0000000e+00 apart, marking (T0314)F52.CA as missing # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.592233 # GDT_score = -14.0777 # GDT_score(maxd=8,maxw=2.9)= -13.3517 # GDT_score(maxd=8,maxw=3.2)= -12.9983 # GDT_score(maxd=8,maxw=3.5)= -12.5318 # GDT_score(maxd=10,maxw=3.8)= -13.6231 # GDT_score(maxd=10,maxw=4)= -13.2555 # GDT_score(maxd=10,maxw=4.2)= -12.9005 # GDT_score(maxd=12,maxw=4.3)= -14.2194 # GDT_score(maxd=12,maxw=4.5)= -13.8372 # GDT_score(maxd=12,maxw=4.7)= -13.455 # GDT_score(maxd=14,maxw=5.2)= -13.9098 # GDT_score(maxd=14,maxw=5.5)= -13.3725 # command:# ReadConformPDB reading from PDB file T0314.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.368932 # GDT_score = -14.0777 # GDT_score(maxd=8,maxw=2.9)= -13.7465 # GDT_score(maxd=8,maxw=3.2)= -13.1947 # GDT_score(maxd=8,maxw=3.5)= -12.6703 # GDT_score(maxd=10,maxw=3.8)= -13.6719 # GDT_score(maxd=10,maxw=4)= -13.3281 # GDT_score(maxd=10,maxw=4.2)= -13.0143 # GDT_score(maxd=12,maxw=4.3)= -14.0807 # GDT_score(maxd=12,maxw=4.5)= -13.7464 # GDT_score(maxd=12,maxw=4.7)= -13.393 # GDT_score(maxd=14,maxw=5.2)= -13.65 # GDT_score(maxd=14,maxw=5.5)= -13.1172 # command:# ReadConformPDB reading from PDB file T0314.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0314.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0314)D59.C and (T0314)R63.C only 0.0000000e+00 apart, marking (T0314)R63.C as missing WARNING: atoms too close: (T0314)D60.N and (T0314)L64.N only 0.0000000e+00 apart, marking (T0314)D60.N as missing WARNING: atoms too close: (T0314)D60.CA and (T0314)L64.CA only 0.0000000e+00 apart, marking (T0314)D60.CA as missing # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0314.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0314)F18.C and (T0314)K24.C only 0.0000000e+00 apart, marking (T0314)K24.C as missing WARNING: atoms too close: (T0314)V19.N and (T0314)T25.N only 0.0000000e+00 apart, marking (T0314)V19.N as missing WARNING: atoms too close: (T0314)V19.CA and (T0314)T25.CA only 0.0000000e+00 apart, marking (T0314)V19.CA as missing WARNING: atoms too close: (T0314)G26.C and (T0314)D59.C only 0.0000000e+00 apart, marking (T0314)D59.C as missing WARNING: atoms too close: (T0314)R27.N and (T0314)D60.N only 0.0000000e+00 apart, marking (T0314)R27.N as missing WARNING: atoms too close: (T0314)R27.CA and (T0314)D60.CA only 0.0000000e+00 apart, marking (T0314)R27.CA as missing # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt2-moved-strand-and-helices.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try14-opt2.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0314.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try18-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try19-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try19-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try19-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try19-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try19-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2-fix-loop-2nd-try.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2-fix-loop.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2-moved-strand-and-helix.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try20-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt2.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try21-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try22-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try23-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try24-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try25-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try26-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try27-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try28-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try29-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt2-fix-loop.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try30-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try31-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try32-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt2-fix-loop.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try33-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try34-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try35-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try36-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt1.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt2.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try37-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try38-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try39-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try40-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try41-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try42-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try43-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt2-fix-loop.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try44-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt1.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt2.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try45-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try46-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try47-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try48-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try49-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt2.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try50-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0314.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1800238720.pdb -s /var/tmp/to_scwrl_1800238720.seq -o /var/tmp/from_scwrl_1800238720.pdb > /var/tmp/scwrl_1800238720.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1800238720.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1782920639.pdb -s /var/tmp/to_scwrl_1782920639.seq -o /var/tmp/from_scwrl_1782920639.pdb > /var/tmp/scwrl_1782920639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1782920639.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1904350645.pdb -s /var/tmp/to_scwrl_1904350645.seq -o /var/tmp/from_scwrl_1904350645.pdb > /var/tmp/scwrl_1904350645.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1904350645.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_985195665.pdb -s /var/tmp/to_scwrl_985195665.seq -o /var/tmp/from_scwrl_985195665.pdb > /var/tmp/scwrl_985195665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_985195665.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_867821375.pdb -s /var/tmp/to_scwrl_867821375.seq -o /var/tmp/from_scwrl_867821375.pdb > /var/tmp/scwrl_867821375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_867821375.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1304121307.pdb -s /var/tmp/to_scwrl_1304121307.seq -o /var/tmp/from_scwrl_1304121307.pdb > /var/tmp/scwrl_1304121307.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1304121307.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1120429637.pdb -s /var/tmp/to_scwrl_1120429637.seq -o /var/tmp/from_scwrl_1120429637.pdb > /var/tmp/scwrl_1120429637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1120429637.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1560724122.pdb -s /var/tmp/to_scwrl_1560724122.seq -o /var/tmp/from_scwrl_1560724122.pdb > /var/tmp/scwrl_1560724122.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1560724122.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_542240761.pdb -s /var/tmp/to_scwrl_542240761.seq -o /var/tmp/from_scwrl_542240761.pdb > /var/tmp/scwrl_542240761.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_542240761.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2056151145.pdb -s /var/tmp/to_scwrl_2056151145.seq -o /var/tmp/from_scwrl_2056151145.pdb > /var/tmp/scwrl_2056151145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2056151145.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1293485897.pdb -s /var/tmp/to_scwrl_1293485897.seq -o /var/tmp/from_scwrl_1293485897.pdb > /var/tmp/scwrl_1293485897.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1293485897.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1087711194.pdb -s /var/tmp/to_scwrl_1087711194.seq -o /var/tmp/from_scwrl_1087711194.pdb > /var/tmp/scwrl_1087711194.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1087711194.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1534144487.pdb -s /var/tmp/to_scwrl_1534144487.seq -o /var/tmp/from_scwrl_1534144487.pdb > /var/tmp/scwrl_1534144487.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1534144487.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_983747213.pdb -s /var/tmp/to_scwrl_983747213.seq -o /var/tmp/from_scwrl_983747213.pdb > /var/tmp/scwrl_983747213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_983747213.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1908853324.pdb -s /var/tmp/to_scwrl_1908853324.seq -o /var/tmp/from_scwrl_1908853324.pdb > /var/tmp/scwrl_1908853324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1908853324.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_271267313.pdb -s /var/tmp/to_scwrl_271267313.seq -o /var/tmp/from_scwrl_271267313.pdb > /var/tmp/scwrl_271267313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_271267313.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1602846241.pdb -s /var/tmp/to_scwrl_1602846241.seq -o /var/tmp/from_scwrl_1602846241.pdb > /var/tmp/scwrl_1602846241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1602846241.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_423963827.pdb -s /var/tmp/to_scwrl_423963827.seq -o /var/tmp/from_scwrl_423963827.pdb > /var/tmp/scwrl_423963827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_423963827.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_193413116.pdb -s /var/tmp/to_scwrl_193413116.seq -o /var/tmp/from_scwrl_193413116.pdb > /var/tmp/scwrl_193413116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_193413116.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_523938996.pdb -s /var/tmp/to_scwrl_523938996.seq -o /var/tmp/from_scwrl_523938996.pdb > /var/tmp/scwrl_523938996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_523938996.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_718319156.pdb -s /var/tmp/to_scwrl_718319156.seq -o /var/tmp/from_scwrl_718319156.pdb > /var/tmp/scwrl_718319156.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_718319156.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2133248305.pdb -s /var/tmp/to_scwrl_2133248305.seq -o /var/tmp/from_scwrl_2133248305.pdb > /var/tmp/scwrl_2133248305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2133248305.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_168726214.pdb -s /var/tmp/to_scwrl_168726214.seq -o /var/tmp/from_scwrl_168726214.pdb > /var/tmp/scwrl_168726214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_168726214.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1690998979.pdb -s /var/tmp/to_scwrl_1690998979.seq -o /var/tmp/from_scwrl_1690998979.pdb > /var/tmp/scwrl_1690998979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1690998979.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1960426177.pdb -s /var/tmp/to_scwrl_1960426177.seq -o /var/tmp/from_scwrl_1960426177.pdb > /var/tmp/scwrl_1960426177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1960426177.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1352600556.pdb -s /var/tmp/to_scwrl_1352600556.seq -o /var/tmp/from_scwrl_1352600556.pdb > /var/tmp/scwrl_1352600556.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1352600556.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_441358752.pdb -s /var/tmp/to_scwrl_441358752.seq -o /var/tmp/from_scwrl_441358752.pdb > /var/tmp/scwrl_441358752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_441358752.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1420813833.pdb -s /var/tmp/to_scwrl_1420813833.seq -o /var/tmp/from_scwrl_1420813833.pdb > /var/tmp/scwrl_1420813833.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1420813833.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_83939595.pdb -s /var/tmp/to_scwrl_83939595.seq -o /var/tmp/from_scwrl_83939595.pdb > /var/tmp/scwrl_83939595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_83939595.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1924239484.pdb -s /var/tmp/to_scwrl_1924239484.seq -o /var/tmp/from_scwrl_1924239484.pdb > /var/tmp/scwrl_1924239484.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1924239484.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2100193817.pdb -s /var/tmp/to_scwrl_2100193817.seq -o /var/tmp/from_scwrl_2100193817.pdb > /var/tmp/scwrl_2100193817.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2100193817.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1884178315.pdb -s /var/tmp/to_scwrl_1884178315.seq -o /var/tmp/from_scwrl_1884178315.pdb > /var/tmp/scwrl_1884178315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1884178315.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1559676476.pdb -s /var/tmp/to_scwrl_1559676476.seq -o /var/tmp/from_scwrl_1559676476.pdb > /var/tmp/scwrl_1559676476.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1559676476.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1857060815.pdb -s /var/tmp/to_scwrl_1857060815.seq -o /var/tmp/from_scwrl_1857060815.pdb > /var/tmp/scwrl_1857060815.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857060815.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_721890334.pdb -s /var/tmp/to_scwrl_721890334.seq -o /var/tmp/from_scwrl_721890334.pdb > /var/tmp/scwrl_721890334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_721890334.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_280014204.pdb -s /var/tmp/to_scwrl_280014204.seq -o /var/tmp/from_scwrl_280014204.pdb > /var/tmp/scwrl_280014204.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_280014204.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1013698476.pdb -s /var/tmp/to_scwrl_1013698476.seq -o /var/tmp/from_scwrl_1013698476.pdb > /var/tmp/scwrl_1013698476.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1013698476.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1842319971.pdb -s /var/tmp/to_scwrl_1842319971.seq -o /var/tmp/from_scwrl_1842319971.pdb > /var/tmp/scwrl_1842319971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1842319971.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1840738326.pdb -s /var/tmp/to_scwrl_1840738326.seq -o /var/tmp/from_scwrl_1840738326.pdb > /var/tmp/scwrl_1840738326.log Error: Couldn't open file /var/tmp/from_scwrl_1840738326.pdb or /var/tmp/from_scwrl_1840738326.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1840738326_b.pdb or decoys//var/tmp/from_scwrl_1840738326_b.pdb.gz for input Trying /var/tmp/from_scwrl_1840738326_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1840738326_b.pdb or /var/tmp/from_scwrl_1840738326_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1840738326_a.pdb or decoys//var/tmp/from_scwrl_1840738326_a.pdb.gz for input Trying /var/tmp/from_scwrl_1840738326_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1840738326_a.pdb or /var/tmp/from_scwrl_1840738326_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1840738326.pdb or /var/tmp/from_scwrl_1840738326_b.pdb or /var/tmp/from_scwrl_1840738326_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1555939236.pdb -s /var/tmp/to_scwrl_1555939236.seq -o /var/tmp/from_scwrl_1555939236.pdb > /var/tmp/scwrl_1555939236.log Error: Couldn't open file /var/tmp/from_scwrl_1555939236.pdb or /var/tmp/from_scwrl_1555939236.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1555939236_b.pdb or decoys//var/tmp/from_scwrl_1555939236_b.pdb.gz for input Trying /var/tmp/from_scwrl_1555939236_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1555939236_b.pdb or /var/tmp/from_scwrl_1555939236_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1555939236_a.pdb or decoys//var/tmp/from_scwrl_1555939236_a.pdb.gz for input Trying /var/tmp/from_scwrl_1555939236_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1555939236_a.pdb or /var/tmp/from_scwrl_1555939236_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1555939236.pdb or /var/tmp/from_scwrl_1555939236_b.pdb or /var/tmp/from_scwrl_1555939236_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1750987469.pdb -s /var/tmp/to_scwrl_1750987469.seq -o /var/tmp/from_scwrl_1750987469.pdb > /var/tmp/scwrl_1750987469.log Error: Couldn't open file /var/tmp/from_scwrl_1750987469.pdb or /var/tmp/from_scwrl_1750987469.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1750987469_b.pdb or decoys//var/tmp/from_scwrl_1750987469_b.pdb.gz for input Trying /var/tmp/from_scwrl_1750987469_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1750987469_b.pdb or /var/tmp/from_scwrl_1750987469_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1750987469_a.pdb or decoys//var/tmp/from_scwrl_1750987469_a.pdb.gz for input Trying /var/tmp/from_scwrl_1750987469_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1750987469_a.pdb or /var/tmp/from_scwrl_1750987469_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1750987469.pdb or /var/tmp/from_scwrl_1750987469_b.pdb or /var/tmp/from_scwrl_1750987469_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_986740577.pdb -s /var/tmp/to_scwrl_986740577.seq -o /var/tmp/from_scwrl_986740577.pdb > /var/tmp/scwrl_986740577.log Error: Couldn't open file /var/tmp/from_scwrl_986740577.pdb or /var/tmp/from_scwrl_986740577.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_986740577_b.pdb or decoys//var/tmp/from_scwrl_986740577_b.pdb.gz for input Trying /var/tmp/from_scwrl_986740577_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_986740577_b.pdb or /var/tmp/from_scwrl_986740577_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_986740577_a.pdb or decoys//var/tmp/from_scwrl_986740577_a.pdb.gz for input Trying /var/tmp/from_scwrl_986740577_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_986740577_a.pdb or /var/tmp/from_scwrl_986740577_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_986740577.pdb or /var/tmp/from_scwrl_986740577_b.pdb or /var/tmp/from_scwrl_986740577_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_496166785.pdb -s /var/tmp/to_scwrl_496166785.seq -o /var/tmp/from_scwrl_496166785.pdb > /var/tmp/scwrl_496166785.log Error: Couldn't open file /var/tmp/from_scwrl_496166785.pdb or /var/tmp/from_scwrl_496166785.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_496166785_b.pdb or decoys//var/tmp/from_scwrl_496166785_b.pdb.gz for input Trying /var/tmp/from_scwrl_496166785_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_496166785_b.pdb or /var/tmp/from_scwrl_496166785_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_496166785_a.pdb or decoys//var/tmp/from_scwrl_496166785_a.pdb.gz for input Trying /var/tmp/from_scwrl_496166785_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_496166785_a.pdb or /var/tmp/from_scwrl_496166785_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_496166785.pdb or /var/tmp/from_scwrl_496166785_b.pdb or /var/tmp/from_scwrl_496166785_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1137648309.pdb -s /var/tmp/to_scwrl_1137648309.seq -o /var/tmp/from_scwrl_1137648309.pdb > /var/tmp/scwrl_1137648309.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1137648309.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1970487789.pdb -s /var/tmp/to_scwrl_1970487789.seq -o /var/tmp/from_scwrl_1970487789.pdb > /var/tmp/scwrl_1970487789.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1970487789.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_257536462.pdb -s /var/tmp/to_scwrl_257536462.seq -o /var/tmp/from_scwrl_257536462.pdb > /var/tmp/scwrl_257536462.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_257536462.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1408915622.pdb -s /var/tmp/to_scwrl_1408915622.seq -o /var/tmp/from_scwrl_1408915622.pdb > /var/tmp/scwrl_1408915622.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1408915622.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1425850384.pdb -s /var/tmp/to_scwrl_1425850384.seq -o /var/tmp/from_scwrl_1425850384.pdb > /var/tmp/scwrl_1425850384.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1425850384.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_681500289.pdb -s /var/tmp/to_scwrl_681500289.seq -o /var/tmp/from_scwrl_681500289.pdb > /var/tmp/scwrl_681500289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_681500289.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1602328738.pdb -s /var/tmp/to_scwrl_1602328738.seq -o /var/tmp/from_scwrl_1602328738.pdb > /var/tmp/scwrl_1602328738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1602328738.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1949789380.pdb -s /var/tmp/to_scwrl_1949789380.seq -o /var/tmp/from_scwrl_1949789380.pdb > /var/tmp/scwrl_1949789380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1949789380.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1399819444.pdb -s /var/tmp/to_scwrl_1399819444.seq -o /var/tmp/from_scwrl_1399819444.pdb > /var/tmp/scwrl_1399819444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1399819444.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1588093397.pdb -s /var/tmp/to_scwrl_1588093397.seq -o /var/tmp/from_scwrl_1588093397.pdb > /var/tmp/scwrl_1588093397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1588093397.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2118515594.pdb -s /var/tmp/to_scwrl_2118515594.seq -o /var/tmp/from_scwrl_2118515594.pdb > /var/tmp/scwrl_2118515594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2118515594.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_943334778.pdb -s /var/tmp/to_scwrl_943334778.seq -o /var/tmp/from_scwrl_943334778.pdb > /var/tmp/scwrl_943334778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_943334778.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1401035927.pdb -s /var/tmp/to_scwrl_1401035927.seq -o /var/tmp/from_scwrl_1401035927.pdb > /var/tmp/scwrl_1401035927.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1401035927.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1323632504.pdb -s /var/tmp/to_scwrl_1323632504.seq -o /var/tmp/from_scwrl_1323632504.pdb > /var/tmp/scwrl_1323632504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1323632504.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1384693529.pdb -s /var/tmp/to_scwrl_1384693529.seq -o /var/tmp/from_scwrl_1384693529.pdb > /var/tmp/scwrl_1384693529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1384693529.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_674366114.pdb -s /var/tmp/to_scwrl_674366114.seq -o /var/tmp/from_scwrl_674366114.pdb > /var/tmp/scwrl_674366114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_674366114.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1407572099.pdb -s /var/tmp/to_scwrl_1407572099.seq -o /var/tmp/from_scwrl_1407572099.pdb > /var/tmp/scwrl_1407572099.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1407572099.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1161449366.pdb -s /var/tmp/to_scwrl_1161449366.seq -o /var/tmp/from_scwrl_1161449366.pdb > /var/tmp/scwrl_1161449366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1161449366.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_627076284.pdb -s /var/tmp/to_scwrl_627076284.seq -o /var/tmp/from_scwrl_627076284.pdb > /var/tmp/scwrl_627076284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_627076284.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 138, because occupancy 1.0000000e+00 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 140, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 342, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 344, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1144266767.pdb -s /var/tmp/to_scwrl_1144266767.seq -o /var/tmp/from_scwrl_1144266767.pdb > /var/tmp/scwrl_1144266767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1144266767.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_573642196.pdb -s /var/tmp/to_scwrl_573642196.seq -o /var/tmp/from_scwrl_573642196.pdb > /var/tmp/scwrl_573642196.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_573642196.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_336653452.pdb -s /var/tmp/to_scwrl_336653452.seq -o /var/tmp/from_scwrl_336653452.pdb > /var/tmp/scwrl_336653452.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_336653452.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1866157101.pdb -s /var/tmp/to_scwrl_1866157101.seq -o /var/tmp/from_scwrl_1866157101.pdb > /var/tmp/scwrl_1866157101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1866157101.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 Skipped atom 138, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 140, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 342, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 344, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_853656401.pdb -s /var/tmp/to_scwrl_853656401.seq -o /var/tmp/from_scwrl_853656401.pdb > /var/tmp/scwrl_853656401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_853656401.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1350351928.pdb -s /var/tmp/to_scwrl_1350351928.seq -o /var/tmp/from_scwrl_1350351928.pdb > /var/tmp/scwrl_1350351928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1350351928.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1560993425.pdb -s /var/tmp/to_scwrl_1560993425.seq -o /var/tmp/from_scwrl_1560993425.pdb > /var/tmp/scwrl_1560993425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1560993425.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_546911080.pdb -s /var/tmp/to_scwrl_546911080.seq -o /var/tmp/from_scwrl_546911080.pdb > /var/tmp/scwrl_546911080.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_546911080.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_758807518.pdb -s /var/tmp/to_scwrl_758807518.seq -o /var/tmp/from_scwrl_758807518.pdb > /var/tmp/scwrl_758807518.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_758807518.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1164497248.pdb -s /var/tmp/to_scwrl_1164497248.seq -o /var/tmp/from_scwrl_1164497248.pdb > /var/tmp/scwrl_1164497248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1164497248.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1533651657.pdb -s /var/tmp/to_scwrl_1533651657.seq -o /var/tmp/from_scwrl_1533651657.pdb > /var/tmp/scwrl_1533651657.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1533651657.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1254974302.pdb -s /var/tmp/to_scwrl_1254974302.seq -o /var/tmp/from_scwrl_1254974302.pdb > /var/tmp/scwrl_1254974302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1254974302.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_154661911.pdb -s /var/tmp/to_scwrl_154661911.seq -o /var/tmp/from_scwrl_154661911.pdb > /var/tmp/scwrl_154661911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_154661911.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1356655799.pdb -s /var/tmp/to_scwrl_1356655799.seq -o /var/tmp/from_scwrl_1356655799.pdb > /var/tmp/scwrl_1356655799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1356655799.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1512510765.pdb -s /var/tmp/to_scwrl_1512510765.seq -o /var/tmp/from_scwrl_1512510765.pdb > /var/tmp/scwrl_1512510765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1512510765.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1563577534.pdb -s /var/tmp/to_scwrl_1563577534.seq -o /var/tmp/from_scwrl_1563577534.pdb > /var/tmp/scwrl_1563577534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1563577534.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_635022537.pdb -s /var/tmp/to_scwrl_635022537.seq -o /var/tmp/from_scwrl_635022537.pdb > /var/tmp/scwrl_635022537.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_635022537.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_46527407.pdb -s /var/tmp/to_scwrl_46527407.seq -o /var/tmp/from_scwrl_46527407.pdb > /var/tmp/scwrl_46527407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_46527407.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1018422626.pdb -s /var/tmp/to_scwrl_1018422626.seq -o /var/tmp/from_scwrl_1018422626.pdb > /var/tmp/scwrl_1018422626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1018422626.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_437328271.pdb -s /var/tmp/to_scwrl_437328271.seq -o /var/tmp/from_scwrl_437328271.pdb > /var/tmp/scwrl_437328271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_437328271.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1446346852.pdb -s /var/tmp/to_scwrl_1446346852.seq -o /var/tmp/from_scwrl_1446346852.pdb > /var/tmp/scwrl_1446346852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1446346852.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_459032376.pdb -s /var/tmp/to_scwrl_459032376.seq -o /var/tmp/from_scwrl_459032376.pdb > /var/tmp/scwrl_459032376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_459032376.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_408360218.pdb -s /var/tmp/to_scwrl_408360218.seq -o /var/tmp/from_scwrl_408360218.pdb > /var/tmp/scwrl_408360218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_408360218.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_242197983.pdb -s /var/tmp/to_scwrl_242197983.seq -o /var/tmp/from_scwrl_242197983.pdb > /var/tmp/scwrl_242197983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_242197983.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1860068303.pdb -s /var/tmp/to_scwrl_1860068303.seq -o /var/tmp/from_scwrl_1860068303.pdb > /var/tmp/scwrl_1860068303.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1860068303.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1731992722.pdb -s /var/tmp/to_scwrl_1731992722.seq -o /var/tmp/from_scwrl_1731992722.pdb > /var/tmp/scwrl_1731992722.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1731992722.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1626891512.pdb -s /var/tmp/to_scwrl_1626891512.seq -o /var/tmp/from_scwrl_1626891512.pdb > /var/tmp/scwrl_1626891512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1626891512.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_386950771.pdb -s /var/tmp/to_scwrl_386950771.seq -o /var/tmp/from_scwrl_386950771.pdb > /var/tmp/scwrl_386950771.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_386950771.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_992081175.pdb -s /var/tmp/to_scwrl_992081175.seq -o /var/tmp/from_scwrl_992081175.pdb > /var/tmp/scwrl_992081175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_992081175.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_640857232.pdb -s /var/tmp/to_scwrl_640857232.seq -o /var/tmp/from_scwrl_640857232.pdb > /var/tmp/scwrl_640857232.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_640857232.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1014027055.pdb -s /var/tmp/to_scwrl_1014027055.seq -o /var/tmp/from_scwrl_1014027055.pdb > /var/tmp/scwrl_1014027055.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1014027055.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2136347943.pdb -s /var/tmp/to_scwrl_2136347943.seq -o /var/tmp/from_scwrl_2136347943.pdb > /var/tmp/scwrl_2136347943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2136347943.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1214499427.pdb -s /var/tmp/to_scwrl_1214499427.seq -o /var/tmp/from_scwrl_1214499427.pdb > /var/tmp/scwrl_1214499427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1214499427.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1350680507.pdb -s /var/tmp/to_scwrl_1350680507.seq -o /var/tmp/from_scwrl_1350680507.pdb > /var/tmp/scwrl_1350680507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1350680507.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1855021397.pdb -s /var/tmp/to_scwrl_1855021397.seq -o /var/tmp/from_scwrl_1855021397.pdb > /var/tmp/scwrl_1855021397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1855021397.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2068155828.pdb -s /var/tmp/to_scwrl_2068155828.seq -o /var/tmp/from_scwrl_2068155828.pdb > /var/tmp/scwrl_2068155828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2068155828.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_553548789.pdb -s /var/tmp/to_scwrl_553548789.seq -o /var/tmp/from_scwrl_553548789.pdb > /var/tmp/scwrl_553548789.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_553548789.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1268531176.pdb -s /var/tmp/to_scwrl_1268531176.seq -o /var/tmp/from_scwrl_1268531176.pdb > /var/tmp/scwrl_1268531176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1268531176.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_467583262.pdb -s /var/tmp/to_scwrl_467583262.seq -o /var/tmp/from_scwrl_467583262.pdb > /var/tmp/scwrl_467583262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_467583262.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1312356306.pdb -s /var/tmp/to_scwrl_1312356306.seq -o /var/tmp/from_scwrl_1312356306.pdb > /var/tmp/scwrl_1312356306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1312356306.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_285544778.pdb -s /var/tmp/to_scwrl_285544778.seq -o /var/tmp/from_scwrl_285544778.pdb > /var/tmp/scwrl_285544778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_285544778.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2001234919.pdb -s /var/tmp/to_scwrl_2001234919.seq -o /var/tmp/from_scwrl_2001234919.pdb > /var/tmp/scwrl_2001234919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2001234919.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_419846963.pdb -s /var/tmp/to_scwrl_419846963.seq -o /var/tmp/from_scwrl_419846963.pdb > /var/tmp/scwrl_419846963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_419846963.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_440206689.pdb -s /var/tmp/to_scwrl_440206689.seq -o /var/tmp/from_scwrl_440206689.pdb > /var/tmp/scwrl_440206689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_440206689.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1210407071.pdb -s /var/tmp/to_scwrl_1210407071.seq -o /var/tmp/from_scwrl_1210407071.pdb > /var/tmp/scwrl_1210407071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1210407071.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1932357728.pdb -s /var/tmp/to_scwrl_1932357728.seq -o /var/tmp/from_scwrl_1932357728.pdb > /var/tmp/scwrl_1932357728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1932357728.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2003784223.pdb -s /var/tmp/to_scwrl_2003784223.seq -o /var/tmp/from_scwrl_2003784223.pdb > /var/tmp/scwrl_2003784223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2003784223.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1845429609.pdb -s /var/tmp/to_scwrl_1845429609.seq -o /var/tmp/from_scwrl_1845429609.pdb > /var/tmp/scwrl_1845429609.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1845429609.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1978885135.pdb -s /var/tmp/to_scwrl_1978885135.seq -o /var/tmp/from_scwrl_1978885135.pdb > /var/tmp/scwrl_1978885135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1978885135.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_874723203.pdb -s /var/tmp/to_scwrl_874723203.seq -o /var/tmp/from_scwrl_874723203.pdb > /var/tmp/scwrl_874723203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_874723203.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 WARNING: atom 1 has residue number 10 < previous residue 106 in servers/POMYSL_TS1.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_135274233.pdb -s /var/tmp/to_scwrl_135274233.seq -o /var/tmp/from_scwrl_135274233.pdb > /var/tmp/scwrl_135274233.log Error: Couldn't open file /var/tmp/from_scwrl_135274233.pdb or /var/tmp/from_scwrl_135274233.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_135274233_b.pdb or decoys//var/tmp/from_scwrl_135274233_b.pdb.gz for input Trying /var/tmp/from_scwrl_135274233_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_135274233_b.pdb or /var/tmp/from_scwrl_135274233_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_135274233_a.pdb or decoys//var/tmp/from_scwrl_135274233_a.pdb.gz for input Trying /var/tmp/from_scwrl_135274233_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_135274233_a.pdb or /var/tmp/from_scwrl_135274233_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_135274233.pdb or /var/tmp/from_scwrl_135274233_b.pdb or /var/tmp/from_scwrl_135274233_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 10 < previous residue 106 in servers/POMYSL_TS2.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1277748340.pdb -s /var/tmp/to_scwrl_1277748340.seq -o /var/tmp/from_scwrl_1277748340.pdb > /var/tmp/scwrl_1277748340.log Error: Couldn't open file /var/tmp/from_scwrl_1277748340.pdb or /var/tmp/from_scwrl_1277748340.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1277748340_b.pdb or decoys//var/tmp/from_scwrl_1277748340_b.pdb.gz for input Trying /var/tmp/from_scwrl_1277748340_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1277748340_b.pdb or /var/tmp/from_scwrl_1277748340_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1277748340_a.pdb or decoys//var/tmp/from_scwrl_1277748340_a.pdb.gz for input Trying /var/tmp/from_scwrl_1277748340_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1277748340_a.pdb or /var/tmp/from_scwrl_1277748340_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1277748340.pdb or /var/tmp/from_scwrl_1277748340_b.pdb or /var/tmp/from_scwrl_1277748340_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1333755578.pdb -s /var/tmp/to_scwrl_1333755578.seq -o /var/tmp/from_scwrl_1333755578.pdb > /var/tmp/scwrl_1333755578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1333755578.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_543634451.pdb -s /var/tmp/to_scwrl_543634451.seq -o /var/tmp/from_scwrl_543634451.pdb > /var/tmp/scwrl_543634451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_543634451.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1519946323.pdb -s /var/tmp/to_scwrl_1519946323.seq -o /var/tmp/from_scwrl_1519946323.pdb > /var/tmp/scwrl_1519946323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1519946323.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1046340236.pdb -s /var/tmp/to_scwrl_1046340236.seq -o /var/tmp/from_scwrl_1046340236.pdb > /var/tmp/scwrl_1046340236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1046340236.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_128143527.pdb -s /var/tmp/to_scwrl_128143527.seq -o /var/tmp/from_scwrl_128143527.pdb > /var/tmp/scwrl_128143527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_128143527.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_999354189.pdb -s /var/tmp/to_scwrl_999354189.seq -o /var/tmp/from_scwrl_999354189.pdb > /var/tmp/scwrl_999354189.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999354189.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1433291006.pdb -s /var/tmp/to_scwrl_1433291006.seq -o /var/tmp/from_scwrl_1433291006.pdb > /var/tmp/scwrl_1433291006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1433291006.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1120224701.pdb -s /var/tmp/to_scwrl_1120224701.seq -o /var/tmp/from_scwrl_1120224701.pdb > /var/tmp/scwrl_1120224701.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1120224701.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1640211420.pdb -s /var/tmp/to_scwrl_1640211420.seq -o /var/tmp/from_scwrl_1640211420.pdb > /var/tmp/scwrl_1640211420.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1640211420.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_299834414.pdb -s /var/tmp/to_scwrl_299834414.seq -o /var/tmp/from_scwrl_299834414.pdb > /var/tmp/scwrl_299834414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_299834414.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1109088997.pdb -s /var/tmp/to_scwrl_1109088997.seq -o /var/tmp/from_scwrl_1109088997.pdb > /var/tmp/scwrl_1109088997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1109088997.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_707227202.pdb -s /var/tmp/to_scwrl_707227202.seq -o /var/tmp/from_scwrl_707227202.pdb > /var/tmp/scwrl_707227202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_707227202.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1650514921.pdb -s /var/tmp/to_scwrl_1650514921.seq -o /var/tmp/from_scwrl_1650514921.pdb > /var/tmp/scwrl_1650514921.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1650514921.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_816626749.pdb -s /var/tmp/to_scwrl_816626749.seq -o /var/tmp/from_scwrl_816626749.pdb > /var/tmp/scwrl_816626749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_816626749.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_627899383.pdb -s /var/tmp/to_scwrl_627899383.seq -o /var/tmp/from_scwrl_627899383.pdb > /var/tmp/scwrl_627899383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_627899383.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_56580063.pdb -s /var/tmp/to_scwrl_56580063.seq -o /var/tmp/from_scwrl_56580063.pdb > /var/tmp/scwrl_56580063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_56580063.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2085157925.pdb -s /var/tmp/to_scwrl_2085157925.seq -o /var/tmp/from_scwrl_2085157925.pdb > /var/tmp/scwrl_2085157925.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2085157925.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1095482644.pdb -s /var/tmp/to_scwrl_1095482644.seq -o /var/tmp/from_scwrl_1095482644.pdb > /var/tmp/scwrl_1095482644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1095482644.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1368936370.pdb -s /var/tmp/to_scwrl_1368936370.seq -o /var/tmp/from_scwrl_1368936370.pdb > /var/tmp/scwrl_1368936370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1368936370.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_223219056.pdb -s /var/tmp/to_scwrl_223219056.seq -o /var/tmp/from_scwrl_223219056.pdb > /var/tmp/scwrl_223219056.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_223219056.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_949233917.pdb -s /var/tmp/to_scwrl_949233917.seq -o /var/tmp/from_scwrl_949233917.pdb > /var/tmp/scwrl_949233917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_949233917.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1788783333.pdb -s /var/tmp/to_scwrl_1788783333.seq -o /var/tmp/from_scwrl_1788783333.pdb > /var/tmp/scwrl_1788783333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1788783333.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_663425745.pdb -s /var/tmp/to_scwrl_663425745.seq -o /var/tmp/from_scwrl_663425745.pdb > /var/tmp/scwrl_663425745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_663425745.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_12157342.pdb -s /var/tmp/to_scwrl_12157342.seq -o /var/tmp/from_scwrl_12157342.pdb > /var/tmp/scwrl_12157342.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12157342.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1573657414.pdb -s /var/tmp/to_scwrl_1573657414.seq -o /var/tmp/from_scwrl_1573657414.pdb > /var/tmp/scwrl_1573657414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1573657414.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_519726322.pdb -s /var/tmp/to_scwrl_519726322.seq -o /var/tmp/from_scwrl_519726322.pdb > /var/tmp/scwrl_519726322.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_519726322.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1857586951.pdb -s /var/tmp/to_scwrl_1857586951.seq -o /var/tmp/from_scwrl_1857586951.pdb > /var/tmp/scwrl_1857586951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857586951.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1405058902.pdb -s /var/tmp/to_scwrl_1405058902.seq -o /var/tmp/from_scwrl_1405058902.pdb > /var/tmp/scwrl_1405058902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1405058902.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1394449524.pdb -s /var/tmp/to_scwrl_1394449524.seq -o /var/tmp/from_scwrl_1394449524.pdb > /var/tmp/scwrl_1394449524.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1394449524.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1992861184.pdb -s /var/tmp/to_scwrl_1992861184.seq -o /var/tmp/from_scwrl_1992861184.pdb > /var/tmp/scwrl_1992861184.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1992861184.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_535323597.pdb -s /var/tmp/to_scwrl_535323597.seq -o /var/tmp/from_scwrl_535323597.pdb > /var/tmp/scwrl_535323597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_535323597.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_580721456.pdb -s /var/tmp/to_scwrl_580721456.seq -o /var/tmp/from_scwrl_580721456.pdb > /var/tmp/scwrl_580721456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_580721456.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_389011988.pdb -s /var/tmp/to_scwrl_389011988.seq -o /var/tmp/from_scwrl_389011988.pdb > /var/tmp/scwrl_389011988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_389011988.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2055269920.pdb -s /var/tmp/to_scwrl_2055269920.seq -o /var/tmp/from_scwrl_2055269920.pdb > /var/tmp/scwrl_2055269920.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2055269920.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1627061691.pdb -s /var/tmp/to_scwrl_1627061691.seq -o /var/tmp/from_scwrl_1627061691.pdb > /var/tmp/scwrl_1627061691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1627061691.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_517155515.pdb -s /var/tmp/to_scwrl_517155515.seq -o /var/tmp/from_scwrl_517155515.pdb > /var/tmp/scwrl_517155515.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_517155515.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_907140463.pdb -s /var/tmp/to_scwrl_907140463.seq -o /var/tmp/from_scwrl_907140463.pdb > /var/tmp/scwrl_907140463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_907140463.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_912869051.pdb -s /var/tmp/to_scwrl_912869051.seq -o /var/tmp/from_scwrl_912869051.pdb > /var/tmp/scwrl_912869051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_912869051.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1637380217.pdb -s /var/tmp/to_scwrl_1637380217.seq -o /var/tmp/from_scwrl_1637380217.pdb > /var/tmp/scwrl_1637380217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1637380217.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_399868236.pdb -s /var/tmp/to_scwrl_399868236.seq -o /var/tmp/from_scwrl_399868236.pdb > /var/tmp/scwrl_399868236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_399868236.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 1 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1212703465.pdb -s /var/tmp/to_scwrl_1212703465.seq -o /var/tmp/from_scwrl_1212703465.pdb > /var/tmp/scwrl_1212703465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1212703465.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_598985568.pdb -s /var/tmp/to_scwrl_598985568.seq -o /var/tmp/from_scwrl_598985568.pdb > /var/tmp/scwrl_598985568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_598985568.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1107095437.pdb -s /var/tmp/to_scwrl_1107095437.seq -o /var/tmp/from_scwrl_1107095437.pdb > /var/tmp/scwrl_1107095437.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1107095437.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_715734740.pdb -s /var/tmp/to_scwrl_715734740.seq -o /var/tmp/from_scwrl_715734740.pdb > /var/tmp/scwrl_715734740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_715734740.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1415612316.pdb -s /var/tmp/to_scwrl_1415612316.seq -o /var/tmp/from_scwrl_1415612316.pdb > /var/tmp/scwrl_1415612316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1415612316.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1734994821.pdb -s /var/tmp/to_scwrl_1734994821.seq -o /var/tmp/from_scwrl_1734994821.pdb > /var/tmp/scwrl_1734994821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1734994821.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_772314804.pdb -s /var/tmp/to_scwrl_772314804.seq -o /var/tmp/from_scwrl_772314804.pdb > /var/tmp/scwrl_772314804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_772314804.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1353286594.pdb -s /var/tmp/to_scwrl_1353286594.seq -o /var/tmp/from_scwrl_1353286594.pdb > /var/tmp/scwrl_1353286594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1353286594.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_682993819.pdb -s /var/tmp/to_scwrl_682993819.seq -o /var/tmp/from_scwrl_682993819.pdb > /var/tmp/scwrl_682993819.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_682993819.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2141251174.pdb -s /var/tmp/to_scwrl_2141251174.seq -o /var/tmp/from_scwrl_2141251174.pdb > /var/tmp/scwrl_2141251174.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2141251174.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1576505650.pdb -s /var/tmp/to_scwrl_1576505650.seq -o /var/tmp/from_scwrl_1576505650.pdb > /var/tmp/scwrl_1576505650.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1576505650.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1632227736.pdb -s /var/tmp/to_scwrl_1632227736.seq -o /var/tmp/from_scwrl_1632227736.pdb > /var/tmp/scwrl_1632227736.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1632227736.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1782550860.pdb -s /var/tmp/to_scwrl_1782550860.seq -o /var/tmp/from_scwrl_1782550860.pdb > /var/tmp/scwrl_1782550860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1782550860.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_92447749.pdb -s /var/tmp/to_scwrl_92447749.seq -o /var/tmp/from_scwrl_92447749.pdb > /var/tmp/scwrl_92447749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_92447749.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1644385078.pdb -s /var/tmp/to_scwrl_1644385078.seq -o /var/tmp/from_scwrl_1644385078.pdb > /var/tmp/scwrl_1644385078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1644385078.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1208724627.pdb -s /var/tmp/to_scwrl_1208724627.seq -o /var/tmp/from_scwrl_1208724627.pdb > /var/tmp/scwrl_1208724627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1208724627.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_612174071.pdb -s /var/tmp/to_scwrl_612174071.seq -o /var/tmp/from_scwrl_612174071.pdb > /var/tmp/scwrl_612174071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_612174071.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1354488382.pdb -s /var/tmp/to_scwrl_1354488382.seq -o /var/tmp/from_scwrl_1354488382.pdb > /var/tmp/scwrl_1354488382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1354488382.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_466299883.pdb -s /var/tmp/to_scwrl_466299883.seq -o /var/tmp/from_scwrl_466299883.pdb > /var/tmp/scwrl_466299883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_466299883.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2006623595.pdb -s /var/tmp/to_scwrl_2006623595.seq -o /var/tmp/from_scwrl_2006623595.pdb > /var/tmp/scwrl_2006623595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2006623595.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1199865919.pdb -s /var/tmp/to_scwrl_1199865919.seq -o /var/tmp/from_scwrl_1199865919.pdb > /var/tmp/scwrl_1199865919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1199865919.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1001623480.pdb -s /var/tmp/to_scwrl_1001623480.seq -o /var/tmp/from_scwrl_1001623480.pdb > /var/tmp/scwrl_1001623480.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1001623480.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_439861404.pdb -s /var/tmp/to_scwrl_439861404.seq -o /var/tmp/from_scwrl_439861404.pdb > /var/tmp/scwrl_439861404.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_439861404.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1588877907.pdb -s /var/tmp/to_scwrl_1588877907.seq -o /var/tmp/from_scwrl_1588877907.pdb > /var/tmp/scwrl_1588877907.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1588877907.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_909409754.pdb -s /var/tmp/to_scwrl_909409754.seq -o /var/tmp/from_scwrl_909409754.pdb > /var/tmp/scwrl_909409754.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_909409754.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2066923096.pdb -s /var/tmp/to_scwrl_2066923096.seq -o /var/tmp/from_scwrl_2066923096.pdb > /var/tmp/scwrl_2066923096.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2066923096.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2106033423.pdb -s /var/tmp/to_scwrl_2106033423.seq -o /var/tmp/from_scwrl_2106033423.pdb > /var/tmp/scwrl_2106033423.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2106033423.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1816550216.pdb -s /var/tmp/to_scwrl_1816550216.seq -o /var/tmp/from_scwrl_1816550216.pdb > /var/tmp/scwrl_1816550216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1816550216.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_832308500.pdb -s /var/tmp/to_scwrl_832308500.seq -o /var/tmp/from_scwrl_832308500.pdb > /var/tmp/scwrl_832308500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_832308500.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1595929993.pdb -s /var/tmp/to_scwrl_1595929993.seq -o /var/tmp/from_scwrl_1595929993.pdb > /var/tmp/scwrl_1595929993.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1595929993.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_68934805.pdb -s /var/tmp/to_scwrl_68934805.seq -o /var/tmp/from_scwrl_68934805.pdb > /var/tmp/scwrl_68934805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_68934805.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2045011965.pdb -s /var/tmp/to_scwrl_2045011965.seq -o /var/tmp/from_scwrl_2045011965.pdb > /var/tmp/scwrl_2045011965.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2045011965.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_47431914.pdb -s /var/tmp/to_scwrl_47431914.seq -o /var/tmp/from_scwrl_47431914.pdb > /var/tmp/scwrl_47431914.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_47431914.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1176030243.pdb -s /var/tmp/to_scwrl_1176030243.seq -o /var/tmp/from_scwrl_1176030243.pdb > /var/tmp/scwrl_1176030243.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1176030243.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_613263059.pdb -s /var/tmp/to_scwrl_613263059.seq -o /var/tmp/from_scwrl_613263059.pdb > /var/tmp/scwrl_613263059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_613263059.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1463044231.pdb -s /var/tmp/to_scwrl_1463044231.seq -o /var/tmp/from_scwrl_1463044231.pdb > /var/tmp/scwrl_1463044231.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1463044231.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_763541418.pdb -s /var/tmp/to_scwrl_763541418.seq -o /var/tmp/from_scwrl_763541418.pdb > /var/tmp/scwrl_763541418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_763541418.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1385577862.pdb -s /var/tmp/to_scwrl_1385577862.seq -o /var/tmp/from_scwrl_1385577862.pdb > /var/tmp/scwrl_1385577862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1385577862.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_668847179.pdb -s /var/tmp/to_scwrl_668847179.seq -o /var/tmp/from_scwrl_668847179.pdb > /var/tmp/scwrl_668847179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_668847179.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1446535236.pdb -s /var/tmp/to_scwrl_1446535236.seq -o /var/tmp/from_scwrl_1446535236.pdb > /var/tmp/scwrl_1446535236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1446535236.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1379345389.pdb -s /var/tmp/to_scwrl_1379345389.seq -o /var/tmp/from_scwrl_1379345389.pdb > /var/tmp/scwrl_1379345389.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1379345389.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 Skipped atom 54, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_97869183.pdb -s /var/tmp/to_scwrl_97869183.seq -o /var/tmp/from_scwrl_97869183.pdb > /var/tmp/scwrl_97869183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_97869183.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_931279326.pdb -s /var/tmp/to_scwrl_931279326.seq -o /var/tmp/from_scwrl_931279326.pdb > /var/tmp/scwrl_931279326.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_931279326.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1014412603.pdb -s /var/tmp/to_scwrl_1014412603.seq -o /var/tmp/from_scwrl_1014412603.pdb > /var/tmp/scwrl_1014412603.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1014412603.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_190316932.pdb -s /var/tmp/to_scwrl_190316932.seq -o /var/tmp/from_scwrl_190316932.pdb > /var/tmp/scwrl_190316932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_190316932.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_428180757.pdb -s /var/tmp/to_scwrl_428180757.seq -o /var/tmp/from_scwrl_428180757.pdb > /var/tmp/scwrl_428180757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_428180757.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_75653583.pdb -s /var/tmp/to_scwrl_75653583.seq -o /var/tmp/from_scwrl_75653583.pdb > /var/tmp/scwrl_75653583.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_75653583.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_802491003.pdb -s /var/tmp/to_scwrl_802491003.seq -o /var/tmp/from_scwrl_802491003.pdb > /var/tmp/scwrl_802491003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_802491003.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1782669139.pdb -s /var/tmp/to_scwrl_1782669139.seq -o /var/tmp/from_scwrl_1782669139.pdb > /var/tmp/scwrl_1782669139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1782669139.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_541953466.pdb -s /var/tmp/to_scwrl_541953466.seq -o /var/tmp/from_scwrl_541953466.pdb > /var/tmp/scwrl_541953466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_541953466.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_661630951.pdb -s /var/tmp/to_scwrl_661630951.seq -o /var/tmp/from_scwrl_661630951.pdb > /var/tmp/scwrl_661630951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_661630951.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_835051412.pdb -s /var/tmp/to_scwrl_835051412.seq -o /var/tmp/from_scwrl_835051412.pdb > /var/tmp/scwrl_835051412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_835051412.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1543576946.pdb -s /var/tmp/to_scwrl_1543576946.seq -o /var/tmp/from_scwrl_1543576946.pdb > /var/tmp/scwrl_1543576946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543576946.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1101492354.pdb -s /var/tmp/to_scwrl_1101492354.seq -o /var/tmp/from_scwrl_1101492354.pdb > /var/tmp/scwrl_1101492354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1101492354.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 Skipped atom 6, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 8, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 10, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 12, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 238, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 240, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 244, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 342, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 344, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 346, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 348, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 350, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 352, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 402, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 404, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_276445673.pdb -s /var/tmp/to_scwrl_276445673.seq -o /var/tmp/from_scwrl_276445673.pdb > /var/tmp/scwrl_276445673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_276445673.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_305503053.pdb -s /var/tmp/to_scwrl_305503053.seq -o /var/tmp/from_scwrl_305503053.pdb > /var/tmp/scwrl_305503053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_305503053.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1020931804.pdb -s /var/tmp/to_scwrl_1020931804.seq -o /var/tmp/from_scwrl_1020931804.pdb > /var/tmp/scwrl_1020931804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1020931804.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_234995449.pdb -s /var/tmp/to_scwrl_234995449.seq -o /var/tmp/from_scwrl_234995449.pdb > /var/tmp/scwrl_234995449.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_234995449.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_2122053269.pdb -s /var/tmp/to_scwrl_2122053269.seq -o /var/tmp/from_scwrl_2122053269.pdb > /var/tmp/scwrl_2122053269.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2122053269.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1853240304.pdb -s /var/tmp/to_scwrl_1853240304.seq -o /var/tmp/from_scwrl_1853240304.pdb > /var/tmp/scwrl_1853240304.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1853240304.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1830925442.pdb -s /var/tmp/to_scwrl_1830925442.seq -o /var/tmp/from_scwrl_1830925442.pdb > /var/tmp/scwrl_1830925442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1830925442.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_43504427.pdb -s /var/tmp/to_scwrl_43504427.seq -o /var/tmp/from_scwrl_43504427.pdb > /var/tmp/scwrl_43504427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_43504427.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1750768622.pdb -s /var/tmp/to_scwrl_1750768622.seq -o /var/tmp/from_scwrl_1750768622.pdb > /var/tmp/scwrl_1750768622.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750768622.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0314)R103.O and (T0314)Q104.N only 0.000 apart, marking (T0314)Q104.N as missing # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1878357356.pdb -s /var/tmp/to_scwrl_1878357356.seq -o /var/tmp/from_scwrl_1878357356.pdb > /var/tmp/scwrl_1878357356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1878357356.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1219534670.pdb -s /var/tmp/to_scwrl_1219534670.seq -o /var/tmp/from_scwrl_1219534670.pdb > /var/tmp/scwrl_1219534670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1219534670.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_216548034.pdb -s /var/tmp/to_scwrl_216548034.seq -o /var/tmp/from_scwrl_216548034.pdb > /var/tmp/scwrl_216548034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_216548034.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1193917940.pdb -s /var/tmp/to_scwrl_1193917940.seq -o /var/tmp/from_scwrl_1193917940.pdb > /var/tmp/scwrl_1193917940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1193917940.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1983076088.pdb -s /var/tmp/to_scwrl_1983076088.seq -o /var/tmp/from_scwrl_1983076088.pdb > /var/tmp/scwrl_1983076088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983076088.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1602125896.pdb -s /var/tmp/to_scwrl_1602125896.seq -o /var/tmp/from_scwrl_1602125896.pdb > /var/tmp/scwrl_1602125896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1602125896.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1862765120.pdb -s /var/tmp/to_scwrl_1862765120.seq -o /var/tmp/from_scwrl_1862765120.pdb > /var/tmp/scwrl_1862765120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1862765120.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1282127678.pdb -s /var/tmp/to_scwrl_1282127678.seq -o /var/tmp/from_scwrl_1282127678.pdb > /var/tmp/scwrl_1282127678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1282127678.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_833987639.pdb -s /var/tmp/to_scwrl_833987639.seq -o /var/tmp/from_scwrl_833987639.pdb > /var/tmp/scwrl_833987639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_833987639.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1960634303.pdb -s /var/tmp/to_scwrl_1960634303.seq -o /var/tmp/from_scwrl_1960634303.pdb > /var/tmp/scwrl_1960634303.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1960634303.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_65923357.pdb -s /var/tmp/to_scwrl_65923357.seq -o /var/tmp/from_scwrl_65923357.pdb > /var/tmp/scwrl_65923357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_65923357.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1848400241.pdb -s /var/tmp/to_scwrl_1848400241.seq -o /var/tmp/from_scwrl_1848400241.pdb > /var/tmp/scwrl_1848400241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1848400241.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 7 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_3467588.pdb -s /var/tmp/to_scwrl_3467588.seq -o /var/tmp/from_scwrl_3467588.pdb > /var/tmp/scwrl_3467588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_3467588.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_494104115.pdb -s /var/tmp/to_scwrl_494104115.seq -o /var/tmp/from_scwrl_494104115.pdb > /var/tmp/scwrl_494104115.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_494104115.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1924053824.pdb -s /var/tmp/to_scwrl_1924053824.seq -o /var/tmp/from_scwrl_1924053824.pdb > /var/tmp/scwrl_1924053824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1924053824.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_805958591.pdb -s /var/tmp/to_scwrl_805958591.seq -o /var/tmp/from_scwrl_805958591.pdb > /var/tmp/scwrl_805958591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_805958591.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_129289607.pdb -s /var/tmp/to_scwrl_129289607.seq -o /var/tmp/from_scwrl_129289607.pdb > /var/tmp/scwrl_129289607.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_129289607.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_318523644.pdb -s /var/tmp/to_scwrl_318523644.seq -o /var/tmp/from_scwrl_318523644.pdb > /var/tmp/scwrl_318523644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_318523644.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1467589541.pdb -s /var/tmp/to_scwrl_1467589541.seq -o /var/tmp/from_scwrl_1467589541.pdb > /var/tmp/scwrl_1467589541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1467589541.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_964341020.pdb -s /var/tmp/to_scwrl_964341020.seq -o /var/tmp/from_scwrl_964341020.pdb > /var/tmp/scwrl_964341020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_964341020.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_1862100590.pdb -s /var/tmp/to_scwrl_1862100590.seq -o /var/tmp/from_scwrl_1862100590.pdb > /var/tmp/scwrl_1862100590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1862100590.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0314 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 96 ; scwrl3 -i /var/tmp/to_scwrl_421598249.pdb -s /var/tmp/to_scwrl_421598249.seq -o /var/tmp/from_scwrl_421598249.pdb > /var/tmp/scwrl_421598249.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_421598249.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 35.0687 sec, elapsed time= 253.161 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate_1.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = 345.236 shub_TS1 costs 0 real_cost = 344.187 panther2_TS1-scwrl costs 0 real_cost = 433.893 panther2_TS1 costs 0 real_cost = 432.903 nFOLD_TS5-scwrl costs 0 real_cost = 324.981 nFOLD_TS5 costs 0 real_cost = 378.424 nFOLD_TS4-scwrl costs 0 real_cost = 362.912 nFOLD_TS4 costs 0 real_cost = 394.68 nFOLD_TS3-scwrl costs 0 real_cost = 331.044 nFOLD_TS3 costs 0 real_cost = 391.172 nFOLD_TS2-scwrl costs 0 real_cost = 318.817 nFOLD_TS2 costs 0 real_cost = 371.594 nFOLD_TS1-scwrl costs 0 real_cost = 292.589 nFOLD_TS1 costs 0 real_cost = 351.957 mGen-3D_TS1-scwrl costs 0 real_cost = 325.72 mGen-3D_TS1 costs 0 real_cost = 354.647 keasar-server_TS5-scwrl costs 0 real_cost = 326.664 keasar-server_TS5 costs 0 real_cost = 325.234 keasar-server_TS4-scwrl costs 0 real_cost = 315.738 keasar-server_TS4 costs 0 real_cost = 320.684 keasar-server_TS3-scwrl costs 0 real_cost = 315.948 keasar-server_TS3 costs 0 real_cost = 320.349 keasar-server_TS2-scwrl costs 0 real_cost = 319.71 keasar-server_TS2 costs 0 real_cost = 322.386 keasar-server_TS1-scwrl costs 0 real_cost = 314.7 keasar-server_TS1 costs 0 real_cost = 314.809 karypis.srv_TS5-scwrl costs 0 real_cost = 337.815 karypis.srv_TS5 costs 0 real_cost = 336.355 karypis.srv_TS4-scwrl costs 0 real_cost = 328.989 karypis.srv_TS4 costs 0 real_cost = 328.473 karypis.srv_TS3-scwrl costs 0 real_cost = 326.029 karypis.srv_TS3 costs 0 real_cost = 325.256 karypis.srv_TS2-scwrl costs 0 real_cost = 349.999 karypis.srv_TS2 costs 0 real_cost = 349.095 karypis.srv_TS1-scwrl costs 0 real_cost = 317.977 karypis.srv_TS1 costs 0 real_cost = 317.977 karypis.srv.4_TS5-scwrl costs 0 real_cost = 331.159 karypis.srv.4_TS5 costs 0 real_cost = 331.159 karypis.srv.4_TS4-scwrl costs 0 real_cost = 328.062 karypis.srv.4_TS4 costs 0 real_cost = 328.088 karypis.srv.4_TS3-scwrl costs 0 real_cost = 315.561 karypis.srv.4_TS3 costs 0 real_cost = 315.529 karypis.srv.4_TS2-scwrl costs 0 real_cost = 303.888 karypis.srv.4_TS2 costs 0 real_cost = 304.795 karypis.srv.4_TS1-scwrl costs 0 real_cost = 352.864 karypis.srv.4_TS1 costs 0 real_cost = 352.864 karypis.srv.2_TS5-scwrl costs 0 real_cost = 327.147 karypis.srv.2_TS5 costs 0 real_cost = 327.147 karypis.srv.2_TS4-scwrl costs 0 real_cost = 296.231 karypis.srv.2_TS4 costs 0 real_cost = 296.257 karypis.srv.2_TS3-scwrl costs 0 real_cost = 313.445 karypis.srv.2_TS3 costs 0 real_cost = 313.248 karypis.srv.2_TS2-scwrl costs 0 real_cost = 298.087 karypis.srv.2_TS2 costs 0 real_cost = 298.087 karypis.srv.2_TS1-scwrl costs 0 real_cost = 290.542 karypis.srv.2_TS1 costs 0 real_cost = 290.542 forecast-s_AL5-scwrl costs 0 real_cost = 367.434 forecast-s_AL5 costs 0 real_cost = 434.389 forecast-s_AL4-scwrl costs 0 real_cost = 371.549 forecast-s_AL4 costs 0 real_cost = 441.222 forecast-s_AL3-scwrl costs 0 real_cost = 346.547 forecast-s_AL3 costs 0 real_cost = 421.273 forecast-s_AL2-scwrl costs 0 real_cost = 392.254 forecast-s_AL2 costs 0 real_cost = 447.681 forecast-s_AL1-scwrl costs 0 real_cost = 411.685 forecast-s_AL1 costs 0 real_cost = 454.857 beautshotbase_TS1-scwrl costs 0 real_cost = 331.157 beautshotbase_TS1 costs 0 real_cost = 319.779 beautshot_TS1-scwrl costs 0 real_cost = 299.312 beautshot_TS1 costs 0 real_cost = 294.029 Zhang-Server_TS5-scwrl costs 0 real_cost = 248.659 Zhang-Server_TS5 costs 0 real_cost = 250.679 Zhang-Server_TS4-scwrl costs 0 real_cost = 283.876 Zhang-Server_TS4 costs 0 real_cost = 284.662 Zhang-Server_TS3-scwrl costs 0 real_cost = 255.962 Zhang-Server_TS3 costs 0 real_cost = 256.033 Zhang-Server_TS2-scwrl costs 0 real_cost = 286.173 Zhang-Server_TS2 costs 0 real_cost = 288.43 Zhang-Server_TS1-scwrl costs 0 real_cost = 271.109 Zhang-Server_TS1 costs 0 real_cost = 267.811 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = 401.256 UNI-EID_sfst_AL5 costs 0 real_cost = 446.389 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = 339.507 UNI-EID_sfst_AL4 costs 0 real_cost = 378.302 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = 365.013 UNI-EID_sfst_AL3 costs 0 real_cost = 413.776 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = 414.056 UNI-EID_sfst_AL2 costs 0 real_cost = 435.664 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 432.593 UNI-EID_sfst_AL1 costs 0 real_cost = 439.186 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 353.825 UNI-EID_expm_TS1 costs 0 real_cost = 395.586 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = 356.672 UNI-EID_bnmx_TS5 costs 0 real_cost = 407.987 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = 396.57 UNI-EID_bnmx_TS4 costs 0 real_cost = 441.544 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = 377.633 UNI-EID_bnmx_TS3 costs 0 real_cost = 426.04 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = 363.242 UNI-EID_bnmx_TS2 costs 0 real_cost = 415.952 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 373.076 UNI-EID_bnmx_TS1 costs 0 real_cost = 418.111 SPARKS2_TS5-scwrl costs 0 real_cost = 318.519 SPARKS2_TS5 costs 0 real_cost = 320.161 SPARKS2_TS4-scwrl costs 0 real_cost = 295.12 SPARKS2_TS4 costs 0 real_cost = 295.721 SPARKS2_TS3-scwrl costs 0 real_cost = 309.502 SPARKS2_TS3 costs 0 real_cost = 310.894 SPARKS2_TS2-scwrl costs 0 real_cost = 308.25 SPARKS2_TS2 costs 0 real_cost = 308.822 SPARKS2_TS1-scwrl costs 0 real_cost = 322.185 SPARKS2_TS1 costs 0 real_cost = 323.108 SP4_TS5-scwrl costs 0 real_cost = 289.005 SP4_TS5 costs 0 real_cost = 291.013 SP4_TS4-scwrl costs 0 real_cost = 275.047 SP4_TS4 costs 0 real_cost = 273.723 SP4_TS3-scwrl costs 0 real_cost = 286.659 SP4_TS3 costs 0 real_cost = 285.853 SP4_TS2-scwrl costs 0 real_cost = 298.194 SP4_TS2 costs 0 real_cost = 294.974 SP4_TS1-scwrl costs 0 real_cost = 314.432 SP4_TS1 costs 0 real_cost = 315.879 SP3_TS5-scwrl costs 0 real_cost = 300.845 SP3_TS5 costs 0 real_cost = 302.822 SP3_TS4-scwrl costs 0 real_cost = 304.628 SP3_TS4 costs 0 real_cost = 306.735 SP3_TS3-scwrl costs 0 real_cost = 283.543 SP3_TS3 costs 0 real_cost = 284.183 SP3_TS2-scwrl costs 0 real_cost = 287.826 SP3_TS2 costs 0 real_cost = 288.432 SP3_TS1-scwrl costs 0 real_cost = 325.859 SP3_TS1 costs 0 real_cost = 326.552 SAM_T06_server_TS5-scwrl costs 0 real_cost = 414.406 SAM_T06_server_TS5 costs 0 real_cost = 406.747 SAM_T06_server_TS4-scwrl costs 0 real_cost = 434.618 SAM_T06_server_TS4 costs 0 real_cost = 438.411 SAM_T06_server_TS3-scwrl costs 0 real_cost = 422.366 SAM_T06_server_TS3 costs 0 real_cost = 425.627 SAM_T06_server_TS2-scwrl costs 0 real_cost = 425.787 SAM_T06_server_TS2 costs 0 real_cost = 429.077 SAM_T06_server_TS1-scwrl costs 0 real_cost = 259.645 SAM_T06_server_TS1 costs 0 real_cost = 260.59 SAM-T02_AL5-scwrl costs 0 real_cost = 399.582 SAM-T02_AL5 costs 0 real_cost = 435.527 SAM-T02_AL4-scwrl costs 0 real_cost = 365.85 SAM-T02_AL4 costs 0 real_cost = 414.373 SAM-T02_AL3-scwrl costs 0 real_cost = 425.789 SAM-T02_AL3 costs 0 real_cost = 455.842 SAM-T02_AL2-scwrl costs 0 real_cost = 434.619 SAM-T02_AL2 costs 0 real_cost = 467.87 SAM-T02_AL1-scwrl costs 0 real_cost = 422.387 SAM-T02_AL1 costs 0 real_cost = 450.879 ROKKY_TS5-scwrl costs 0 real_cost = 282.254 ROKKY_TS5 costs 0 real_cost = 360.7 ROKKY_TS4-scwrl costs 0 real_cost = 274.973 ROKKY_TS4 costs 0 real_cost = 352.579 ROKKY_TS3-scwrl costs 0 real_cost = 239.602 ROKKY_TS3 costs 0 real_cost = 320.267 ROKKY_TS2-scwrl costs 0 real_cost = 270.354 ROKKY_TS2 costs 0 real_cost = 347.719 ROKKY_TS1-scwrl costs 0 real_cost = 278.696 ROKKY_TS1 costs 0 real_cost = 357.414 ROBETTA_TS5-scwrl costs 0 real_cost = 300.169 ROBETTA_TS5 costs 0 real_cost = 300.039 ROBETTA_TS4-scwrl costs 0 real_cost = 268.018 ROBETTA_TS4 costs 0 real_cost = 272.21 ROBETTA_TS3-scwrl costs 0 real_cost = 269.116 ROBETTA_TS3 costs 0 real_cost = 270.775 ROBETTA_TS2-scwrl costs 0 real_cost = 267.304 ROBETTA_TS2 costs 0 real_cost = 268.148 ROBETTA_TS1-scwrl costs 0 real_cost = 265.375 ROBETTA_TS1 costs 0 real_cost = 265.208 RAPTOR_TS5-scwrl costs 0 real_cost = 293.653 RAPTOR_TS5 costs 0 real_cost = 292.917 RAPTOR_TS4-scwrl costs 0 real_cost = 320.818 RAPTOR_TS4 costs 0 real_cost = 321.011 RAPTOR_TS3-scwrl costs 0 real_cost = 290.969 RAPTOR_TS3 costs 0 real_cost = 291.679 RAPTOR_TS2-scwrl costs 0 real_cost = 305.29 RAPTOR_TS2 costs 0 real_cost = 302.446 RAPTOR_TS1-scwrl costs 0 real_cost = 308.748 RAPTOR_TS1 costs 0 real_cost = 307.907 RAPTORESS_TS5-scwrl costs 0 real_cost = 289.005 RAPTORESS_TS5 costs 0 real_cost = 291.125 RAPTORESS_TS4-scwrl costs 0 real_cost = 310.056 RAPTORESS_TS4 costs 0 real_cost = 312.442 RAPTORESS_TS3-scwrl costs 0 real_cost = 307.021 RAPTORESS_TS3 costs 0 real_cost = 308.993 RAPTORESS_TS2-scwrl costs 0 real_cost = 294.184 RAPTORESS_TS2 costs 0 real_cost = 296.002 RAPTORESS_TS1-scwrl costs 0 real_cost = 303.631 RAPTORESS_TS1 costs 0 real_cost = 304.631 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = 284.804 RAPTOR-ACE_TS5 costs 0 real_cost = 285.884 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = 318.445 RAPTOR-ACE_TS4 costs 0 real_cost = 321.815 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = 276.926 RAPTOR-ACE_TS3 costs 0 real_cost = 279.54 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = 334.742 RAPTOR-ACE_TS2 costs 0 real_cost = 334.734 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = 295.297 RAPTOR-ACE_TS1 costs 0 real_cost = 296.415 Pmodeller6_TS5-scwrl costs 0 real_cost = 305.402 Pmodeller6_TS5 costs 0 real_cost = 305.252 Pmodeller6_TS4-scwrl costs 0 real_cost = 307.212 Pmodeller6_TS4 costs 0 real_cost = 308.141 Pmodeller6_TS3-scwrl costs 0 real_cost = 307.212 Pmodeller6_TS3 costs 0 real_cost = 308.141 Pmodeller6_TS2-scwrl costs 0 real_cost = 251.081 Pmodeller6_TS2 costs 0 real_cost = 253.879 Pmodeller6_TS1-scwrl costs 0 real_cost = 279.102 Pmodeller6_TS1 costs 0 real_cost = 279.102 Phyre-1_TS1-scwrl costs 0 real_cost = 437.376 Phyre-1_TS1 costs 0 real_cost = 434.471 Pcons6_TS5-scwrl costs 0 real_cost = 282.148 Pcons6_TS5 costs 0 real_cost = 282.148 Pcons6_TS4-scwrl costs 0 real_cost = 278.801 Pcons6_TS4 costs 0 real_cost = 278.52 Pcons6_TS3-scwrl costs 0 real_cost = 299.415 Pcons6_TS3 costs 0 real_cost = 299.415 Pcons6_TS2-scwrl costs 0 real_cost = 319.599 Pcons6_TS2 costs 0 real_cost = 319.818 Pcons6_TS1-scwrl costs 0 real_cost = 265.375 Pcons6_TS1 costs 0 real_cost = 265.208 PROTINFO_TS5-scwrl costs 0 real_cost = 266.4 PROTINFO_TS5 costs 0 real_cost = 263.459 PROTINFO_TS4-scwrl costs 0 real_cost = 255.168 PROTINFO_TS4 costs 0 real_cost = 250.736 PROTINFO_TS3-scwrl costs 0 real_cost = 289.772 PROTINFO_TS3 costs 0 real_cost = 293.49 PROTINFO_TS2-scwrl costs 0 real_cost = 316.918 PROTINFO_TS2 costs 0 real_cost = 317.401 PROTINFO_TS1-scwrl costs 0 real_cost = 328.037 PROTINFO_TS1 costs 0 real_cost = 329.589 PROTINFO-AB_TS5-scwrl costs 0 real_cost = 257.372 PROTINFO-AB_TS5 costs 0 real_cost = 260.1 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 257.382 PROTINFO-AB_TS4 costs 0 real_cost = 255.971 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 275.668 PROTINFO-AB_TS3 costs 0 real_cost = 272.405 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 252.456 PROTINFO-AB_TS2 costs 0 real_cost = 256.71 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 255.168 PROTINFO-AB_TS1 costs 0 real_cost = 250.736 POMYSL_TS5-scwrl costs 0 real_cost = 321.143 POMYSL_TS5 costs 0 real_cost = 335.981 POMYSL_TS4-scwrl costs 0 real_cost = 332.289 POMYSL_TS4 costs 0 real_cost = 333.179 POMYSL_TS3-scwrl costs 0 real_cost = 322.584 POMYSL_TS3 costs 0 real_cost = 324.335 POMYSL_TS2-scwrl costs 0 real_cost = 462.145 POMYSL_TS1-scwrl costs 0 real_cost = 459.593 NN_PUT_lab_TS1-scwrl costs 0 real_cost = 301.707 NN_PUT_lab_TS1 costs 0 real_cost = 300.169 MetaTasser_TS5-scwrl costs 0 real_cost = 293.226 MetaTasser_TS5 costs 0 real_cost = 297.266 MetaTasser_TS4-scwrl costs 0 real_cost = 296.606 MetaTasser_TS4 costs 0 real_cost = 289.998 MetaTasser_TS3-scwrl costs 0 real_cost = 285.399 MetaTasser_TS3 costs 0 real_cost = 277.934 MetaTasser_TS2-scwrl costs 0 real_cost = 301.303 MetaTasser_TS2 costs 0 real_cost = 300.673 MetaTasser_TS1-scwrl costs 0 real_cost = 293.723 MetaTasser_TS1 costs 0 real_cost = 291.227 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 300.548 Ma-OPUS-server_TS5 costs 0 real_cost = 303.566 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 305.697 Ma-OPUS-server_TS4 costs 0 real_cost = 307.356 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = 278.967 Ma-OPUS-server_TS3 costs 0 real_cost = 283.602 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 293.165 Ma-OPUS-server_TS2 costs 0 real_cost = 294.085 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 299.581 Ma-OPUS-server_TS1 costs 0 real_cost = 300.51 LOOPP_TS5-scwrl costs 0 real_cost = 301.992 LOOPP_TS5 costs 0 real_cost = 302.603 LOOPP_TS4-scwrl costs 0 real_cost = 276.176 LOOPP_TS4 costs 0 real_cost = 275.372 LOOPP_TS3-scwrl costs 0 real_cost = 342.442 LOOPP_TS3 costs 0 real_cost = 344.177 LOOPP_TS2-scwrl costs 0 real_cost = 314.266 LOOPP_TS2 costs 0 real_cost = 314.981 LOOPP_TS1-scwrl costs 0 real_cost = 301.707 LOOPP_TS1 costs 0 real_cost = 300.169 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 340.207 Huber-Torda-Server_TS5 costs 0 real_cost = 376.477 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 351.064 Huber-Torda-Server_TS4 costs 0 real_cost = 390.261 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 354.778 Huber-Torda-Server_TS3 costs 0 real_cost = 403.734 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 393.714 Huber-Torda-Server_TS2 costs 0 real_cost = 412.25 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = 356.951 Huber-Torda-Server_TS1 costs 0 real_cost = 397.346 HHpred3_TS1-scwrl costs 0 real_cost = 293.474 HHpred3_TS1 costs 0 real_cost = 291.982 HHpred2_TS1-scwrl costs 0 real_cost = 293.474 HHpred2_TS1 costs 0 real_cost = 291.982 HHpred1_TS1-scwrl costs 0 real_cost = 317.57 HHpred1_TS1 costs 0 real_cost = 318.137 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = 310.614 GeneSilicoMetaServer_TS5 costs 0 real_cost = 318.208 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = 302.933 GeneSilicoMetaServer_TS4 costs 0 real_cost = 302.524 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = 292.318 GeneSilicoMetaServer_TS3 costs 0 real_cost = 293.005 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = 278.155 GeneSilicoMetaServer_TS2 costs 0 real_cost = 276.458 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = 323.578 GeneSilicoMetaServer_TS1 costs 0 real_cost = 324.027 FUNCTION_TS5-scwrl costs 0 real_cost = 326.64 FUNCTION_TS5 costs 0 real_cost = 326.251 FUNCTION_TS4-scwrl costs 0 real_cost = 306.283 FUNCTION_TS4 costs 0 real_cost = 307.111 FUNCTION_TS3-scwrl costs 0 real_cost = 316.203 FUNCTION_TS3 costs 0 real_cost = 316.458 FUNCTION_TS2-scwrl costs 0 real_cost = 324.473 FUNCTION_TS2 costs 0 real_cost = 323.932 FUNCTION_TS1-scwrl costs 0 real_cost = 320.031 FUNCTION_TS1 costs 0 real_cost = 322.628 FUGUE_AL5-scwrl costs 0 real_cost = 401.055 FUGUE_AL5 costs 0 real_cost = 444.374 FUGUE_AL4-scwrl costs 0 real_cost = 407.626 FUGUE_AL4 costs 0 real_cost = 407.626 FUGUE_AL3-scwrl costs 0 real_cost = 364.182 FUGUE_AL3 costs 0 real_cost = 443.339 FUGUE_AL2-scwrl costs 0 real_cost = 420.07 FUGUE_AL2 costs 0 real_cost = 420.07 FUGUE_AL1-scwrl costs 0 real_cost = 326.628 FUGUE_AL1 costs 0 real_cost = 398.493 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 311.626 FPSOLVER-SERVER_TS5 costs 0 real_cost = 313.133 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 288.357 FPSOLVER-SERVER_TS4 costs 0 real_cost = 289.711 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 314.339 FPSOLVER-SERVER_TS3 costs 0 real_cost = 315.872 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 316.015 FPSOLVER-SERVER_TS2 costs 0 real_cost = 317.435 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 308.913 FPSOLVER-SERVER_TS1 costs 0 real_cost = 309.93 FORTE2_AL5-scwrl costs 0 real_cost = 385.396 FORTE2_AL5 costs 0 real_cost = 448.205 FORTE2_AL4-scwrl costs 0 real_cost = 411.491 FORTE2_AL4 costs 0 real_cost = 411.491 FORTE2_AL3-scwrl costs 0 real_cost = 323.38 FORTE2_AL3 costs 0 real_cost = 399.987 FORTE2_AL2-scwrl costs 0 real_cost = 402.563 FORTE2_AL2 costs 0 real_cost = 456.823 FORTE2_AL1-scwrl costs 0 real_cost = 325.546 FORTE2_AL1 costs 0 real_cost = 406.702 FORTE1_AL5-scwrl costs 0 real_cost = 411.491 FORTE1_AL5 costs 0 real_cost = 411.491 FORTE1_AL4-scwrl costs 0 real_cost = 424.353 FORTE1_AL4 costs 0 real_cost = 424.353 FORTE1_AL3-scwrl costs 0 real_cost = 323.38 FORTE1_AL3 costs 0 real_cost = 399.987 FORTE1_AL2-scwrl costs 0 real_cost = 402.563 FORTE1_AL2 costs 0 real_cost = 456.823 FORTE1_AL1-scwrl costs 0 real_cost = 325.546 FORTE1_AL1 costs 0 real_cost = 406.702 FOLDpro_TS5-scwrl costs 0 real_cost = 309.296 FOLDpro_TS5 costs 0 real_cost = 309.579 FOLDpro_TS4-scwrl costs 0 real_cost = 316.197 FOLDpro_TS4 costs 0 real_cost = 316.617 FOLDpro_TS3-scwrl costs 0 real_cost = 339.472 FOLDpro_TS3 costs 0 real_cost = 339.322 FOLDpro_TS2-scwrl costs 0 real_cost = 315.376 FOLDpro_TS2 costs 0 real_cost = 317.161 FOLDpro_TS1-scwrl costs 0 real_cost = 315.713 FOLDpro_TS1 costs 0 real_cost = 315.458 FAMS_TS5-scwrl costs 0 real_cost = 316.635 FAMS_TS5 costs 0 real_cost = 319.26 FAMS_TS4-scwrl costs 0 real_cost = 300.777 FAMS_TS4 costs 0 real_cost = 303.599 FAMS_TS3-scwrl costs 0 real_cost = 305.15 FAMS_TS3 costs 0 real_cost = 310.479 FAMS_TS2-scwrl costs 0 real_cost = 306.283 FAMS_TS2 costs 0 real_cost = 307.111 FAMS_TS1-scwrl costs 0 real_cost = 306.596 FAMS_TS1 costs 0 real_cost = 305.004 FAMSD_TS5-scwrl costs 0 real_cost = 333.974 FAMSD_TS5 costs 0 real_cost = 331.892 FAMSD_TS4-scwrl costs 0 real_cost = 321.056 FAMSD_TS4 costs 0 real_cost = 319.058 FAMSD_TS3-scwrl costs 0 real_cost = 313.382 FAMSD_TS3 costs 0 real_cost = 312.751 FAMSD_TS2-scwrl costs 0 real_cost = 316.635 FAMSD_TS2 costs 0 real_cost = 319.26 FAMSD_TS1-scwrl costs 0 real_cost = 308.795 FAMSD_TS1 costs 0 real_cost = 308.696 Distill_TS5-scwrl costs 0 real_cost = 361.83 Distill_TS4-scwrl costs 0 real_cost = 363.676 Distill_TS3-scwrl costs 0 real_cost = 373.133 Distill_TS2-scwrl costs 0 real_cost = 359.839 Distill_TS1-scwrl costs 0 real_cost = 370.037 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 390.491 CaspIta-FOX_TS5 costs 0 real_cost = 384.034 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 330.432 CaspIta-FOX_TS4 costs 0 real_cost = 330.477 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 393.82 CaspIta-FOX_TS3 costs 0 real_cost = 378.866 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 399.797 CaspIta-FOX_TS2 costs 0 real_cost = 399.284 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 358.049 CaspIta-FOX_TS1 costs 0 real_cost = 356.385 CIRCLE_TS5-scwrl costs 0 real_cost = 300.777 CIRCLE_TS5 costs 0 real_cost = 303.599 CIRCLE_TS4-scwrl costs 0 real_cost = 308.543 CIRCLE_TS4 costs 0 real_cost = 309.489 CIRCLE_TS3-scwrl costs 0 real_cost = 289.731 CIRCLE_TS3 costs 0 real_cost = 292.825 CIRCLE_TS2-scwrl costs 0 real_cost = 298.498 CIRCLE_TS2 costs 0 real_cost = 304.856 CIRCLE_TS1-scwrl costs 0 real_cost = 305.15 CIRCLE_TS1 costs 0 real_cost = 310.479 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = 288.858 Bilab-ENABLE_TS5 costs 0 real_cost = 289.327 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = 288.643 Bilab-ENABLE_TS4 costs 0 real_cost = 288.641 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = 276.658 Bilab-ENABLE_TS3 costs 0 real_cost = 278.892 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = 282.569 Bilab-ENABLE_TS2 costs 0 real_cost = 282.48 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = 283.508 Bilab-ENABLE_TS1 costs 0 real_cost = 283.781 BayesHH_TS1-scwrl costs 0 real_cost = 303.3 BayesHH_TS1 costs 0 real_cost = 295.136 ABIpro_TS5-scwrl costs 0 real_cost = 290.136 ABIpro_TS5 costs 0 real_cost = 290.136 ABIpro_TS4-scwrl costs 0 real_cost = 250.667 ABIpro_TS4 costs 0 real_cost = 250.663 ABIpro_TS3-scwrl costs 0 real_cost = 273.82 ABIpro_TS3 costs 0 real_cost = 273.78 ABIpro_TS2-scwrl costs 0 real_cost = 289.707 ABIpro_TS2 costs 0 real_cost = 289.15 ABIpro_TS1-scwrl costs 0 real_cost = 263.467 ABIpro_TS1 costs 0 real_cost = 262.532 3Dpro_TS5-scwrl costs 0 real_cost = 331.741 3Dpro_TS5 costs 0 real_cost = 331.712 3Dpro_TS4-scwrl costs 0 real_cost = 320.025 3Dpro_TS4 costs 0 real_cost = 317.843 3Dpro_TS3-scwrl costs 0 real_cost = 335.11 3Dpro_TS3 costs 0 real_cost = 335.4 3Dpro_TS2-scwrl costs 0 real_cost = 335.99 3Dpro_TS2 costs 0 real_cost = 336.31 3Dpro_TS1-scwrl costs 0 real_cost = 305.404 3Dpro_TS1 costs 0 real_cost = 305.042 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 333.733 3D-JIGSAW_TS5 costs 0 real_cost = 329.274 3D-JIGSAW_TS4-scwrl costs 0 real_cost = 326.366 3D-JIGSAW_TS4 costs 0 real_cost = 313.982 3D-JIGSAW_TS3-scwrl costs 0 real_cost = 298.638 3D-JIGSAW_TS3 costs 0 real_cost = 302.422 3D-JIGSAW_TS2-scwrl costs 0 real_cost = 272.061 3D-JIGSAW_TS2 costs 0 real_cost = 274.47 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 346.243 3D-JIGSAW_TS1 costs 0 real_cost = 337.64 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = 330.397 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = 326.576 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = 317.012 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = 310.504 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 305.563 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 305.563 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = 308.131 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = 308.131 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = 269.425 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = 267.625 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 313.938 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 313.938 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 278.306 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = 276.506 T0314.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 320.651 T0314.try9-opt2.pdb.gz costs 0 real_cost = 321.222 T0314.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = 320.486 T0314.try9-opt1.pdb.gz costs 0 real_cost = 321.612 T0314.try9-opt1-scwrl.pdb.gz costs 0 real_cost = 321.542 T0314.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 317.42 T0314.try8-opt2.pdb.gz costs 0 real_cost = 318.214 T0314.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = 316.259 T0314.try8-opt1.pdb.gz costs 0 real_cost = 316.468 T0314.try8-opt1-scwrl.pdb.gz costs 0 real_cost = 316.416 T0314.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 324.893 T0314.try7-opt2.pdb.gz costs 0 real_cost = 324.974 T0314.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = 323.605 T0314.try7-opt1.pdb.gz costs 0 real_cost = 325.259 T0314.try7-opt1-scwrl.pdb.gz costs 0 real_cost = 325.357 T0314.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 311.674 T0314.try6-opt2.pdb.gz costs 0 real_cost = 311.699 T0314.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = 311.908 T0314.try6-opt1.pdb.gz costs 0 real_cost = 311.892 T0314.try6-opt1-scwrl.pdb.gz costs 0 real_cost = 311.408 T0314.try50-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 295.925 T0314.try50-opt2.pdb.gz costs 0 real_cost = 295.926 T0314.try50-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 297.152 T0314.try50-opt2.gromacs0.pdb.gz costs 0 real_cost = 297.405 T0314.try50-opt1.pdb.gz costs 0 real_cost = 295.867 T0314.try50-opt1-scwrl.pdb.gz costs 0 real_cost = 294.8 T0314.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 325.625 T0314.try5-opt2.pdb.gz costs 0 real_cost = 325.43 T0314.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = 324.089 T0314.try5-opt1.pdb.gz costs 0 real_cost = 326.278 T0314.try5-opt1-scwrl.pdb.gz costs 0 real_cost = 326.015 T0314.try49-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 260.193 T0314.try49-opt2.pdb.gz costs 0 real_cost = 263.032 T0314.try49-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 263.317 T0314.try49-opt2.gromacs0.pdb.gz costs 0 real_cost = 265.87 T0314.try49-opt1.pdb.gz costs 0 real_cost = 263.471 T0314.try49-opt1-scwrl.pdb.gz costs 0 real_cost = 260.616 T0314.try48-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 311.113 T0314.try48-opt2.pdb.gz costs 0 real_cost = 311.881 T0314.try48-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 311.189 T0314.try48-opt2.gromacs0.pdb.gz costs 0 real_cost = 311.695 T0314.try48-opt1.pdb.gz costs 0 real_cost = 310.749 T0314.try48-opt1-scwrl.pdb.gz costs 0 real_cost = 309.766 T0314.try47-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 262.089 T0314.try47-opt2.pdb.gz costs 0 real_cost = 264.555 T0314.try47-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 263.53 T0314.try47-opt2.gromacs0.pdb.gz costs 0 real_cost = 266.2 T0314.try47-opt1.pdb.gz costs 0 real_cost = 267.017 T0314.try47-opt1-scwrl.pdb.gz costs 0 real_cost = 263.017 T0314.try46-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 313.215 T0314.try46-opt2.pdb.gz costs 0 real_cost = 313.285 T0314.try46-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 313.067 T0314.try46-opt2.gromacs0.pdb.gz costs 0 real_cost = 312.631 T0314.try46-opt1.pdb.gz costs 0 real_cost = 313.289 T0314.try46-opt1-scwrl.pdb.gz costs 0 real_cost = 312.417 T0314.try45-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 274.632 T0314.try45-opt2.pdb.gz costs 0 real_cost = 275.177 T0314.try45-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 276.183 T0314.try45-opt2.gromacs0.pdb.gz costs 0 real_cost = 275.969 T0314.try45-opt1.pdb.gz costs 0 real_cost = 274.077 T0314.try45-opt1-scwrl.pdb.gz costs 0 real_cost = 273.602 T0314.try44-opt2.pdb.gz costs 0 real_cost = 304.84 T0314.try44-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 305.141 T0314.try44-opt2.gromacs0.pdb.gz costs 0 real_cost = 306.075 T0314.try44-opt2-fix-loop.pdb.gz costs 0 real_cost = 314.576 T0314.try44-opt1.pdb.gz costs 0 real_cost = 304.647 T0314.try44-opt1-scwrl.pdb.gz costs 0 real_cost = 304.088 T0314.try43-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 301.614 T0314.try43-opt2.pdb.gz costs 0 real_cost = 301.913 T0314.try43-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 302.029 T0314.try43-opt2.gromacs0.pdb.gz costs 0 real_cost = 302.245 T0314.try43-opt1.pdb.gz costs 0 real_cost = 301.27 T0314.try43-opt1-scwrl.pdb.gz costs 0 real_cost = 300.452 T0314.try42-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 303.421 T0314.try42-opt2.pdb.gz costs 0 real_cost = 303.983 T0314.try42-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 304.657 T0314.try42-opt2.gromacs0.pdb.gz costs 0 real_cost = 306.308 T0314.try42-opt1.pdb.gz costs 0 real_cost = 302.191 T0314.try42-opt1-scwrl.pdb.gz costs 0 real_cost = 302.141 T0314.try41-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 305.724 T0314.try41-opt2.pdb.gz costs 0 real_cost = 306.061 T0314.try41-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 310.502 T0314.try41-opt2.gromacs0.pdb.gz costs 0 real_cost = 310.843 T0314.try41-opt1.pdb.gz costs 0 real_cost = 306.953 T0314.try41-opt1-scwrl.pdb.gz costs 0 real_cost = 306.831 T0314.try40-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 317.899 T0314.try40-opt2.pdb.gz costs 0 real_cost = 318.299 T0314.try40-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 318.555 T0314.try40-opt2.gromacs0.pdb.gz costs 0 real_cost = 319.127 T0314.try40-opt1.pdb.gz costs 0 real_cost = 318.775 T0314.try40-opt1-scwrl.pdb.gz costs 0 real_cost = 318.61 T0314.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 290.661 T0314.try4-opt2.pdb.gz costs 0 real_cost = 291.641 T0314.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = 295.254 T0314.try4-opt1.pdb.gz costs 0 real_cost = 292.487 T0314.try4-opt1-scwrl.pdb.gz costs 0 real_cost = 291.725 T0314.try39-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 305.485 T0314.try39-opt2.pdb.gz costs 0 real_cost = 305.497 T0314.try39-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 303.464 T0314.try39-opt2.gromacs0.pdb.gz costs 0 real_cost = 303.275 T0314.try39-opt1.pdb.gz costs 0 real_cost = 306.634 T0314.try39-opt1-scwrl.pdb.gz costs 0 real_cost = 306.36 T0314.try38-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 313.833 T0314.try38-opt2.pdb.gz costs 0 real_cost = 313.994 T0314.try38-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 310.587 T0314.try38-opt2.gromacs0.pdb.gz costs 0 real_cost = 311.25 T0314.try38-opt1.pdb.gz costs 0 real_cost = 311.821 T0314.try38-opt1-scwrl.pdb.gz costs 0 real_cost = 311.569 T0314.try37-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 296.494 T0314.try37-opt2.pdb.gz costs 0 real_cost = 296.338 T0314.try37-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 299.325 T0314.try37-opt2.gromacs0.pdb.gz costs 0 real_cost = 299.317 T0314.try37-opt1.pdb.gz costs 0 real_cost = 296.117 T0314.try37-opt1-scwrl.pdb.gz costs 0 real_cost = 296.028 T0314.try36-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 267.562 T0314.try36-opt2.pdb.gz costs 0 real_cost = 268.057 T0314.try36-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 266.887 T0314.try36-opt2.gromacs0.pdb.gz costs 0 real_cost = 266.276 T0314.try36-opt1.pdb.gz costs 0 real_cost = 269.147 T0314.try36-opt1-scwrl.pdb.gz costs 0 real_cost = 269.098 T0314.try35-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 318.797 T0314.try35-opt2.pdb.gz costs 0 real_cost = 319.114 T0314.try35-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 318.588 T0314.try35-opt2.gromacs0.pdb.gz costs 0 real_cost = 318.974 T0314.try35-opt1.pdb.gz costs 0 real_cost = 318.227 T0314.try35-opt1-scwrl.pdb.gz costs 0 real_cost = 317.965 T0314.try34-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 264.244 T0314.try34-opt2.pdb.gz costs 0 real_cost = 269.896 T0314.try34-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 269.343 T0314.try34-opt2.gromacs0.pdb.gz costs 0 real_cost = 272.124 T0314.try34-opt1.pdb.gz costs 0 real_cost = 267.868 T0314.try34-opt1-scwrl.pdb.gz costs 0 real_cost = 265.446 T0314.try33-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 300.351 T0314.try33-opt2.pdb.gz costs 0 real_cost = 300.319 T0314.try33-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 300.88 T0314.try33-opt2.gromacs0.pdb.gz costs 0 real_cost = 301.274 T0314.try33-opt2-fix-loop.pdb.gz costs 0 real_cost = 298.062 T0314.try33-opt1.pdb.gz costs 0 real_cost = 301.113 T0314.try33-opt1-scwrl.pdb.gz costs 0 real_cost = 300.609 T0314.try32-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 313.398 T0314.try32-opt2.pdb.gz costs 0 real_cost = 313.262 T0314.try32-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 314.315 T0314.try32-opt2.gromacs0.pdb.gz costs 0 real_cost = 313.724 T0314.try32-opt1.pdb.gz costs 0 real_cost = 313.097 T0314.try32-opt1-scwrl.pdb.gz costs 0 real_cost = 312.558 T0314.try31-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 254.024 T0314.try31-opt2.pdb.gz costs 0 real_cost = 257.392 T0314.try31-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 258.505 T0314.try31-opt2.gromacs0.pdb.gz costs 0 real_cost = 260.41 T0314.try31-opt1.pdb.gz costs 0 real_cost = 259.061 T0314.try31-opt1-scwrl.pdb.gz costs 0 real_cost = 256.271 T0314.try30-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 257.85 T0314.try30-opt2.pdb.gz costs 0 real_cost = 261.336 T0314.try30-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 264.339 T0314.try30-opt2.gromacs0.pdb.gz costs 0 real_cost = 265.93 T0314.try30-opt2-fix-loop.pdb.gz costs 0 real_cost = 262.051 T0314.try30-opt1.pdb.gz costs 0 real_cost = 259.535 T0314.try30-opt1-scwrl.pdb.gz costs 0 real_cost = 257.198 T0314.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 303.09 T0314.try3-opt2.pdb.gz costs 0 real_cost = 304.323 T0314.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 303.803 T0314.try3-opt1.pdb.gz costs 0 real_cost = 303.31 T0314.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 302.299 T0314.try29-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 312.654 T0314.try29-opt2.pdb.gz costs 0 real_cost = 312.796 T0314.try29-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 313.191 T0314.try29-opt2.gromacs0.pdb.gz costs 0 real_cost = 313.452 T0314.try29-opt1.pdb.gz costs 0 real_cost = 313.496 T0314.try29-opt1-scwrl.pdb.gz costs 0 real_cost = 313.017 T0314.try28-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 318.561 T0314.try28-opt2.pdb.gz costs 0 real_cost = 318.949 T0314.try28-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 322.878 T0314.try28-opt2.gromacs0.pdb.gz costs 0 real_cost = 323.309 T0314.try28-opt1.pdb.gz costs 0 real_cost = 316.306 T0314.try28-opt1-scwrl.pdb.gz costs 0 real_cost = 316.443 T0314.try27-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 310.176 T0314.try27-opt2.pdb.gz costs 0 real_cost = 310.289 T0314.try27-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 311.118 T0314.try27-opt2.gromacs0.pdb.gz costs 0 real_cost = 311.391 T0314.try27-opt1.pdb.gz costs 0 real_cost = 310.493 T0314.try27-opt1-scwrl.pdb.gz costs 0 real_cost = 309.464 T0314.try26-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 306.637 T0314.try26-opt2.pdb.gz costs 0 real_cost = 306.592 T0314.try26-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 305.944 T0314.try26-opt2.gromacs0.pdb.gz costs 0 real_cost = 305.832 T0314.try26-opt1.pdb.gz costs 0 real_cost = 305.843 T0314.try26-opt1-scwrl.pdb.gz costs 0 real_cost = 306.313 T0314.try25-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 305.401 T0314.try25-opt2.pdb.gz costs 0 real_cost = 305.75 T0314.try25-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 306.402 T0314.try25-opt2.gromacs0.pdb.gz costs 0 real_cost = 306.844 T0314.try25-opt1.pdb.gz costs 0 real_cost = 297.273 T0314.try25-opt1-scwrl.pdb.gz costs 0 real_cost = 296.426 T0314.try24-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 315.582 T0314.try24-opt2.pdb.gz costs 0 real_cost = 315.387 T0314.try24-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 317.085 T0314.try24-opt2.gromacs0.pdb.gz costs 0 real_cost = 317.354 T0314.try24-opt1.pdb.gz costs 0 real_cost = 314.525 T0314.try24-opt1-scwrl.pdb.gz costs 0 real_cost = 314.385 T0314.try23-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 302.3 T0314.try23-opt2.pdb.gz costs 0 real_cost = 302.516 T0314.try23-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 303.728 T0314.try23-opt2.gromacs0.pdb.gz costs 0 real_cost = 305.005 T0314.try23-opt1.pdb.gz costs 0 real_cost = 316.03 T0314.try23-opt1-scwrl.pdb.gz costs 0 real_cost = 314.534 T0314.try22-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 315.372 T0314.try22-opt2.pdb.gz costs 0 real_cost = 315.17 T0314.try22-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 316.709 T0314.try22-opt2.gromacs0.pdb.gz costs 0 real_cost = 316.891 T0314.try22-opt1.pdb.gz costs 0 real_cost = 314.036 T0314.try22-opt1-scwrl.pdb.gz costs 0 real_cost = 313.728 T0314.try21-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 309.38 T0314.try21-opt2.pdb.gz costs 0 real_cost = 310.005 T0314.try21-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 313.006 T0314.try21-opt2.gromacs0.pdb.gz costs 0 real_cost = 313.171 T0314.try21-opt1.pdb.gz costs 0 real_cost = 312.504 T0314.try21-opt1-scwrl.pdb.gz costs 0 real_cost = 311.851 T0314.try20-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 317.027 T0314.try20-opt2.pdb.gz costs 0 real_cost = 317.183 T0314.try20-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 316.486 T0314.try20-opt2.gromacs0.pdb.gz costs 0 real_cost = 316.667 T0314.try20-opt2-moved-strand-and-helix.pdb.gz costs 0 real_cost = 309.475 T0314.try20-opt2-fix-loop.pdb.gz costs 0 real_cost = 313.318 T0314.try20-opt2-fix-loop-2nd-try.pdb.gz costs 0 real_cost = 313.043 T0314.try20-opt1.pdb.gz costs 0 real_cost = 316.12 T0314.try20-opt1-scwrl.pdb.gz costs 0 real_cost = 315.753 T0314.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 276.022 T0314.try2-opt2.pdb.gz costs 0 real_cost = 276.544 T0314.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = 277.886 T0314.try2-opt1.pdb.gz costs 0 real_cost = 274.48 T0314.try2-opt1-scwrl.pdb.gz costs 0 real_cost = 274.326 T0314.try19-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 300.05 T0314.try19-opt2.pdb.gz costs 0 real_cost = 301.163 T0314.try19-opt2.gromacs0.pdb.gz costs 0 real_cost = 300.321 T0314.try19-opt1.pdb.gz costs 0 real_cost = 303.016 T0314.try19-opt1-scwrl.pdb.gz costs 0 real_cost = 301.772 T0314.try18-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 308.449 T0314.try18-opt2.pdb.gz costs 0 real_cost = 308.273 T0314.try18-opt2.gromacs0.pdb.gz costs 0 real_cost = 310.096 T0314.try18-opt1.pdb.gz costs 0 real_cost = 309.74 T0314.try18-opt1-scwrl.pdb.gz costs 0 real_cost = 309.525 T0314.try17-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 318.022 T0314.try17-opt2.pdb.gz costs 0 real_cost = 318.546 T0314.try17-opt2.gromacs0.pdb.gz costs 0 real_cost = 318.426 T0314.try17-opt1.pdb.gz costs 0 real_cost = 318.042 T0314.try17-opt1-scwrl.pdb.gz costs 0 real_cost = 317.99 T0314.try16-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 298.785 T0314.try16-opt2.pdb.gz costs 0 real_cost = 300.658 T0314.try16-opt2.gromacs0.pdb.gz costs 0 real_cost = 301.511 T0314.try16-opt1.pdb.gz costs 0 real_cost = 300.034 T0314.try16-opt1-scwrl.pdb.gz costs 0 real_cost = 299.852 T0314.try15-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 291.297 T0314.try15-opt2.pdb.gz costs 0 real_cost = 291.689 T0314.try15-opt2.gromacs0.pdb.gz costs 0 real_cost = 298.089 T0314.try15-opt1.pdb.gz costs 0 real_cost = 289.591 T0314.try15-opt1-scwrl.pdb.gz costs 0 real_cost = 289.42 T0314.try14-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 276.757 T0314.try14-opt2.pdb.gz costs 0 real_cost = 280.718 T0314.try14-opt2.gromacs0.pdb.gz costs 0 real_cost = 281.741 T0314.try14-opt1.pdb.gz costs 0 real_cost = 279.125 T0314.try14-opt1-scwrl.pdb.gz costs 0 real_cost = 279.594 T0314.try13-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 259.122 T0314.try13-opt2.pdb.gz costs 0 real_cost = 259.825 T0314.try13-opt2.gromacs0.pdb.gz costs 0 real_cost = 263.691 T0314.try13-opt2-moved-strand-and-helices.pdb.gz costs 0 real_cost = 263.795 T0314.try13-opt1.pdb.gz costs 0 real_cost = 258.666 T0314.try13-opt1-scwrl.pdb.gz costs 0 real_cost = 258.399 T0314.try12-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 315.385 T0314.try12-opt2.pdb.gz costs 0 real_cost = 316.967 T0314.try12-opt2.gromacs0.pdb.gz costs 0 real_cost = 318.673 T0314.try12-opt1.pdb.gz costs 0 real_cost = 318.552 T0314.try12-opt1-scwrl.pdb.gz costs 0 real_cost = 316.302 T0314.try11-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 316.226 T0314.try11-opt2.pdb.gz costs 0 real_cost = 316.844 T0314.try11-opt2.gromacs0.pdb.gz costs 0 real_cost = 316.8 T0314.try11-opt1.pdb.gz costs 0 real_cost = 315.801 T0314.try11-opt1-scwrl.pdb.gz costs 0 real_cost = 315.278 T0314.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 329.308 T0314.try10-opt2.pdb.gz costs 0 real_cost = 329.051 T0314.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = 323.11 T0314.try10-opt1.pdb.gz costs 0 real_cost = 328.732 T0314.try10-opt1-scwrl.pdb.gz costs 0 real_cost = 328.053 T0314.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 293.657 T0314.try1-opt2.pdb.gz costs 0 real_cost = 293.181 T0314.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 292.354 T0314.try1-opt1.pdb.gz costs 0 real_cost = 292.067 T0314.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 291.893 ../model5.ts-submitted costs 0 real_cost = 280.919 ../model4.ts-submitted costs 0 real_cost = 318.724 ../model3.ts-submitted costs 0 real_cost = 310.375 ../model2.ts-submitted costs 0 real_cost = 261.408 ../model1.ts-submitted costs 0 real_cost = 311.272 align5 costs 0 real_cost = 377.399 align4 costs 0 real_cost = 417.698 align3 costs 0 real_cost = 400.559 align2 costs 0 real_cost = 398.343 align1 costs 0 real_cost = 361.173 T0314.try1-opt2.pdb costs 0 real_cost = 293.181 model5-scwrl costs 0 real_cost = 280.056 model5.ts-submitted costs 0 real_cost = 280.919 model4-scwrl costs 0 real_cost = 318.433 model4.ts-submitted costs 0 real_cost = 318.724 model3-scwrl costs 0 real_cost = 309.641 model3.ts-submitted costs 0 real_cost = 310.375 model2-scwrl costs 0 real_cost = 256.074 model2.ts-submitted costs 0 real_cost = 261.408 model1-scwrl costs 0 real_cost = 310.288 model1.ts-submitted costs 0 real_cost = 311.272 T0314_1.real.pdb costs 0 real_cost = -889.4 # command:CPU_time= 269.733 sec, elapsed time= 487.964 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate_1.rdb > sort.tmp mv -f sort.tmp decoys/evaluate_1.rdb mv -f decoys/evaluate_1.pretty decoys/evaluate_1.pretty.old mv: cannot stat `decoys/evaluate_1.pretty': No such file or directory make: [decoys/evaluate_1.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_1.rdb > decoys/evaluate_1.pretty