/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0312.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0312.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0312/ -e s/START_COL/1/ \ -e s/REAL_PDB/2h6lA/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1174891062 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.84611 sec, elapsed time= 5.87716 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.9201 sec, elapsed time= 5.96809 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0312 numbered 1 through 146 Created new target T0312 from T0312.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2h6lA expands to /projects/compbio/data/pdb/2h6l.pdb.gz 2h6lA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Read 140 residues and 1114 atoms. # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.18176 sec, elapsed time= 8.35536 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 142 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -42.3214 # GDT_score(maxd=8,maxw=2.9)= -42.6722 # GDT_score(maxd=8,maxw=3.2)= -40.9177 # GDT_score(maxd=8,maxw=3.5)= -39.0987 # GDT_score(maxd=10,maxw=3.8)= -42.0016 # GDT_score(maxd=10,maxw=4)= -40.7433 # GDT_score(maxd=10,maxw=4.2)= -39.4782 # GDT_score(maxd=12,maxw=4.3)= -43.165 # GDT_score(maxd=12,maxw=4.5)= -41.8445 # GDT_score(maxd=12,maxw=4.7)= -40.5336 # GDT_score(maxd=14,maxw=5.2)= -40.9879 # GDT_score(maxd=14,maxw=5.5)= -39.2012 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.6740000e+03 rmsd (weighted)= 1.0085740e+01 (unweighted)= 2.5997527e+01 superimposing iter= 1 total_weight= 2.6516876e+03 rmsd (weighted)= 6.1341627e+00 (unweighted)= 2.6031736e+01 superimposing iter= 2 total_weight= 1.5409287e+03 rmsd (weighted)= 5.0214782e+00 (unweighted)= 2.6152789e+01 superimposing iter= 3 total_weight= 1.5210729e+03 rmsd (weighted)= 4.1339176e+00 (unweighted)= 2.6318431e+01 superimposing iter= 4 total_weight= 1.7016694e+03 rmsd (weighted)= 3.2177784e+00 (unweighted)= 2.6468979e+01 superimposing iter= 5 total_weight= 1.7846870e+03 rmsd (weighted)= 2.4619653e+00 (unweighted)= 2.6569277e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1628941314.pdb -s /var/tmp/to_scwrl_1628941314.seq -o /var/tmp/from_scwrl_1628941314.pdb > /var/tmp/scwrl_1628941314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1628941314.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -43.0357 # GDT_score(maxd=8,maxw=2.9)= -42.9329 # GDT_score(maxd=8,maxw=3.2)= -41.1275 # GDT_score(maxd=8,maxw=3.5)= -39.3119 # GDT_score(maxd=10,maxw=3.8)= -42.4211 # GDT_score(maxd=10,maxw=4)= -41.123 # GDT_score(maxd=10,maxw=4.2)= -39.8478 # GDT_score(maxd=12,maxw=4.3)= -43.6799 # GDT_score(maxd=12,maxw=4.5)= -42.3527 # GDT_score(maxd=12,maxw=4.7)= -41.0554 # GDT_score(maxd=14,maxw=5.2)= -41.5532 # GDT_score(maxd=14,maxw=5.5)= -39.6988 # command:# request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_998640692.pdb -s /var/tmp/to_scwrl_998640692.seq -o /var/tmp/from_scwrl_998640692.pdb > /var/tmp/scwrl_998640692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_998640692.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -46.25 # GDT_score(maxd=8,maxw=2.9)= -45.0207 # GDT_score(maxd=8,maxw=3.2)= -43.1245 # GDT_score(maxd=8,maxw=3.5)= -41.1726 # GDT_score(maxd=10,maxw=3.8)= -44.9477 # GDT_score(maxd=10,maxw=4)= -43.5378 # GDT_score(maxd=10,maxw=4.2)= -42.1757 # GDT_score(maxd=12,maxw=4.3)= -46.24 # GDT_score(maxd=12,maxw=4.5)= -44.831 # GDT_score(maxd=12,maxw=4.7)= -43.471 # GDT_score(maxd=14,maxw=5.2)= -43.9542 # GDT_score(maxd=14,maxw=5.5)= -41.9572 # command:# request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_462117502.pdb -s /var/tmp/to_scwrl_462117502.seq -o /var/tmp/from_scwrl_462117502.pdb > /var/tmp/scwrl_462117502.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_462117502.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -42.5 # GDT_score(maxd=8,maxw=2.9)= -41.9361 # GDT_score(maxd=8,maxw=3.2)= -40.0643 # GDT_score(maxd=8,maxw=3.5)= -38.2516 # GDT_score(maxd=10,maxw=3.8)= -41.4876 # GDT_score(maxd=10,maxw=4)= -40.164 # GDT_score(maxd=10,maxw=4.2)= -38.8628 # GDT_score(maxd=12,maxw=4.3)= -42.7162 # GDT_score(maxd=12,maxw=4.5)= -41.3707 # GDT_score(maxd=12,maxw=4.7)= -40.0729 # GDT_score(maxd=14,maxw=5.2)= -40.6551 # GDT_score(maxd=14,maxw=5.5)= -38.9299 # command:# request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1375993437.pdb -s /var/tmp/to_scwrl_1375993437.seq -o /var/tmp/from_scwrl_1375993437.pdb > /var/tmp/scwrl_1375993437.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375993437.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -45.3571 # GDT_score(maxd=8,maxw=2.9)= -44.5783 # GDT_score(maxd=8,maxw=3.2)= -42.5328 # GDT_score(maxd=8,maxw=3.5)= -40.3551 # GDT_score(maxd=10,maxw=3.8)= -43.7754 # GDT_score(maxd=10,maxw=4)= -42.2932 # GDT_score(maxd=10,maxw=4.2)= -40.8848 # GDT_score(maxd=12,maxw=4.3)= -44.6001 # GDT_score(maxd=12,maxw=4.5)= -43.1747 # GDT_score(maxd=12,maxw=4.7)= -41.8196 # GDT_score(maxd=14,maxw=5.2)= -42.1654 # GDT_score(maxd=14,maxw=5.5)= -40.3785 # command:# request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_876127166.pdb -s /var/tmp/to_scwrl_876127166.seq -o /var/tmp/from_scwrl_876127166.pdb > /var/tmp/scwrl_876127166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_876127166.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0312.try1-opt2.pdb looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -43.75 # GDT_score(maxd=8,maxw=2.9)= -42.1988 # GDT_score(maxd=8,maxw=3.2)= -40.3334 # GDT_score(maxd=8,maxw=3.5)= -38.3622 # GDT_score(maxd=10,maxw=3.8)= -41.8349 # GDT_score(maxd=10,maxw=4)= -40.4712 # GDT_score(maxd=10,maxw=4.2)= -39.185 # GDT_score(maxd=12,maxw=4.3)= -42.8339 # GDT_score(maxd=12,maxw=4.5)= -41.5193 # GDT_score(maxd=12,maxw=4.7)= -40.2405 # GDT_score(maxd=14,maxw=5.2)= -40.6309 # GDT_score(maxd=14,maxw=5.5)= -38.8523 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.6740000e+03 rmsd (weighted)= 1.0040445e+01 (unweighted)= 2.1957573e+01 superimposing iter= 1 total_weight= 3.1426768e+03 rmsd (weighted)= 5.5445501e+00 (unweighted)= 2.1920181e+01 superimposing iter= 2 total_weight= 1.6160293e+03 rmsd (weighted)= 4.4465607e+00 (unweighted)= 2.1997441e+01 superimposing iter= 3 total_weight= 1.4332543e+03 rmsd (weighted)= 3.7990832e+00 (unweighted)= 2.2152736e+01 superimposing iter= 4 total_weight= 1.4900332e+03 rmsd (weighted)= 3.1881322e+00 (unweighted)= 2.2323333e+01 superimposing iter= 5 total_weight= 1.5622657e+03 rmsd (weighted)= 2.6217805e+00 (unweighted)= 2.2460056e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0312.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0312)G34.C and (T0312)I35.C only 0.0000000e+00 apart, marking (T0312)I35.C as missing WARNING: atoms too close: (T0312)I35.N and (T0312)H36.N only 0.0000000e+00 apart, marking (T0312)I35.N as missing WARNING: atoms too close: (T0312)I35.CA and (T0312)H36.CA only 0.0000000e+00 apart, marking (T0312)I35.CA as missing WARNING: atoms too close: (T0312)S121.C and (T0312)E123.C only 0.0000000e+00 apart, marking (T0312)E123.C as missing WARNING: atoms too close: (T0312)G122.N and (T0312)A124.N only 0.0000000e+00 apart, marking (T0312)G122.N as missing WARNING: atoms too close: (T0312)G122.CA and (T0312)A124.CA only 0.0000000e+00 apart, marking (T0312)G122.CA as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.842857 # GDT_score = -44.2857 # GDT_score(maxd=8,maxw=2.9)= -43.0972 # GDT_score(maxd=8,maxw=3.2)= -41.1813 # GDT_score(maxd=8,maxw=3.5)= -39.1438 # GDT_score(maxd=10,maxw=3.8)= -42.5382 # GDT_score(maxd=10,maxw=4)= -41.1346 # GDT_score(maxd=10,maxw=4.2)= -39.8049 # GDT_score(maxd=12,maxw=4.3)= -43.4523 # GDT_score(maxd=12,maxw=4.5)= -42.0964 # GDT_score(maxd=12,maxw=4.7)= -40.8113 # GDT_score(maxd=14,maxw=5.2)= -41.0623 # GDT_score(maxd=14,maxw=5.5)= -39.313 # command:# ReadConformPDB reading from PDB file T0312.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0312)H36.C and (T0312)A45.C only 0.0000000e+00 apart, marking (T0312)A45.C as missing WARNING: atoms too close: (T0312)A37.N and (T0312)V46.N only 0.0000000e+00 apart, marking (T0312)A37.N as missing WARNING: atoms too close: (T0312)A37.CA and (T0312)V46.CA only 0.0000000e+00 apart, marking (T0312)A37.CA as missing WARNING: atoms too close: (T0312)D55.C and (T0312)K63.C only 0.0000000e+00 apart, marking (T0312)K63.C as missing WARNING: atoms too close: (T0312)Q56.N and (T0312)K64.N only 0.0000000e+00 apart, marking (T0312)Q56.N as missing WARNING: atoms too close: (T0312)Q56.CA and (T0312)K64.CA only 0.0000000e+00 apart, marking (T0312)Q56.CA as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.357143 # GDT_score = -16.9643 # GDT_score(maxd=8,maxw=2.9)= -17.9696 # GDT_score(maxd=8,maxw=3.2)= -17.06 # GDT_score(maxd=8,maxw=3.5)= -16.2014 # GDT_score(maxd=10,maxw=3.8)= -16.8084 # GDT_score(maxd=10,maxw=4)= -16.2894 # GDT_score(maxd=10,maxw=4.2)= -15.8199 # GDT_score(maxd=12,maxw=4.3)= -16.8135 # GDT_score(maxd=12,maxw=4.5)= -16.3519 # GDT_score(maxd=12,maxw=4.7)= -15.9297 # GDT_score(maxd=14,maxw=5.2)= -16.005 # GDT_score(maxd=14,maxw=5.5)= -15.3714 # command:# ReadConformPDB reading from PDB file T0312.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0312.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0312.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0312)V62.C and (T0312)K64.C only 0.0000000e+00 apart, marking (T0312)K64.C as missing WARNING: atoms too close: (T0312)K63.N and (T0312)E65.N only 0.0000000e+00 apart, marking (T0312)K63.N as missing WARNING: atoms too close: (T0312)K63.CA and (T0312)E65.CA only 0.0000000e+00 apart, marking (T0312)K63.CA as missing WARNING: atoms too close: (T0312)H104.C and (T0312)F106.C only 0.0000000e+00 apart, marking (T0312)F106.C as missing WARNING: atoms too close: (T0312)L105.N and (T0312)S107.N only 0.0000000e+00 apart, marking (T0312)L105.N as missing WARNING: atoms too close: (T0312)L105.CA and (T0312)S107.CA only 0.0000000e+00 apart, marking (T0312)L105.CA as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try9-try4.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file scrambled-loop.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1312713644.pdb -s /var/tmp/to_scwrl_1312713644.seq -o /var/tmp/from_scwrl_1312713644.pdb > /var/tmp/scwrl_1312713644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1312713644.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_322087816.pdb -s /var/tmp/to_scwrl_322087816.seq -o /var/tmp/from_scwrl_322087816.pdb > /var/tmp/scwrl_322087816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322087816.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1260708166.pdb -s /var/tmp/to_scwrl_1260708166.seq -o /var/tmp/from_scwrl_1260708166.pdb > /var/tmp/scwrl_1260708166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1260708166.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_279009042.pdb -s /var/tmp/to_scwrl_279009042.seq -o /var/tmp/from_scwrl_279009042.pdb > /var/tmp/scwrl_279009042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_279009042.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_720865560.pdb -s /var/tmp/to_scwrl_720865560.seq -o /var/tmp/from_scwrl_720865560.pdb > /var/tmp/scwrl_720865560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_720865560.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_414100729.pdb -s /var/tmp/to_scwrl_414100729.seq -o /var/tmp/from_scwrl_414100729.pdb > /var/tmp/scwrl_414100729.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_414100729.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_942480495.pdb -s /var/tmp/to_scwrl_942480495.seq -o /var/tmp/from_scwrl_942480495.pdb > /var/tmp/scwrl_942480495.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_942480495.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1873673164.pdb -s /var/tmp/to_scwrl_1873673164.seq -o /var/tmp/from_scwrl_1873673164.pdb > /var/tmp/scwrl_1873673164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1873673164.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1885082267.pdb -s /var/tmp/to_scwrl_1885082267.seq -o /var/tmp/from_scwrl_1885082267.pdb > /var/tmp/scwrl_1885082267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1885082267.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_334277418.pdb -s /var/tmp/to_scwrl_334277418.seq -o /var/tmp/from_scwrl_334277418.pdb > /var/tmp/scwrl_334277418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_334277418.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1484493117.pdb -s /var/tmp/to_scwrl_1484493117.seq -o /var/tmp/from_scwrl_1484493117.pdb > /var/tmp/scwrl_1484493117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1484493117.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1286427190.pdb -s /var/tmp/to_scwrl_1286427190.seq -o /var/tmp/from_scwrl_1286427190.pdb > /var/tmp/scwrl_1286427190.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1286427190.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1684990405.pdb -s /var/tmp/to_scwrl_1684990405.seq -o /var/tmp/from_scwrl_1684990405.pdb > /var/tmp/scwrl_1684990405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1684990405.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1220311896.pdb -s /var/tmp/to_scwrl_1220311896.seq -o /var/tmp/from_scwrl_1220311896.pdb > /var/tmp/scwrl_1220311896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1220311896.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1631824829.pdb -s /var/tmp/to_scwrl_1631824829.seq -o /var/tmp/from_scwrl_1631824829.pdb > /var/tmp/scwrl_1631824829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631824829.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1793567241.pdb -s /var/tmp/to_scwrl_1793567241.seq -o /var/tmp/from_scwrl_1793567241.pdb > /var/tmp/scwrl_1793567241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1793567241.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_647974302.pdb -s /var/tmp/to_scwrl_647974302.seq -o /var/tmp/from_scwrl_647974302.pdb > /var/tmp/scwrl_647974302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_647974302.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_274897551.pdb -s /var/tmp/to_scwrl_274897551.seq -o /var/tmp/from_scwrl_274897551.pdb > /var/tmp/scwrl_274897551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_274897551.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_574723468.pdb -s /var/tmp/to_scwrl_574723468.seq -o /var/tmp/from_scwrl_574723468.pdb > /var/tmp/scwrl_574723468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_574723468.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_402775192.pdb -s /var/tmp/to_scwrl_402775192.seq -o /var/tmp/from_scwrl_402775192.pdb > /var/tmp/scwrl_402775192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_402775192.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1302573668.pdb -s /var/tmp/to_scwrl_1302573668.seq -o /var/tmp/from_scwrl_1302573668.pdb > /var/tmp/scwrl_1302573668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1302573668.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2032462702.pdb -s /var/tmp/to_scwrl_2032462702.seq -o /var/tmp/from_scwrl_2032462702.pdb > /var/tmp/scwrl_2032462702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2032462702.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1473949205.pdb -s /var/tmp/to_scwrl_1473949205.seq -o /var/tmp/from_scwrl_1473949205.pdb > /var/tmp/scwrl_1473949205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1473949205.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1727285801.pdb -s /var/tmp/to_scwrl_1727285801.seq -o /var/tmp/from_scwrl_1727285801.pdb > /var/tmp/scwrl_1727285801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1727285801.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_16911402.pdb -s /var/tmp/to_scwrl_16911402.seq -o /var/tmp/from_scwrl_16911402.pdb > /var/tmp/scwrl_16911402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_16911402.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1010417077.pdb -s /var/tmp/to_scwrl_1010417077.seq -o /var/tmp/from_scwrl_1010417077.pdb > /var/tmp/scwrl_1010417077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1010417077.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1208743468.pdb -s /var/tmp/to_scwrl_1208743468.seq -o /var/tmp/from_scwrl_1208743468.pdb > /var/tmp/scwrl_1208743468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1208743468.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1015552094.pdb -s /var/tmp/to_scwrl_1015552094.seq -o /var/tmp/from_scwrl_1015552094.pdb > /var/tmp/scwrl_1015552094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1015552094.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1472534578.pdb -s /var/tmp/to_scwrl_1472534578.seq -o /var/tmp/from_scwrl_1472534578.pdb > /var/tmp/scwrl_1472534578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1472534578.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_437253260.pdb -s /var/tmp/to_scwrl_437253260.seq -o /var/tmp/from_scwrl_437253260.pdb > /var/tmp/scwrl_437253260.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_437253260.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1891679259.pdb -s /var/tmp/to_scwrl_1891679259.seq -o /var/tmp/from_scwrl_1891679259.pdb > /var/tmp/scwrl_1891679259.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1891679259.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_637764576.pdb -s /var/tmp/to_scwrl_637764576.seq -o /var/tmp/from_scwrl_637764576.pdb > /var/tmp/scwrl_637764576.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_637764576.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_759341076.pdb -s /var/tmp/to_scwrl_759341076.seq -o /var/tmp/from_scwrl_759341076.pdb > /var/tmp/scwrl_759341076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_759341076.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1004903780.pdb -s /var/tmp/to_scwrl_1004903780.seq -o /var/tmp/from_scwrl_1004903780.pdb > /var/tmp/scwrl_1004903780.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1004903780.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_916773618.pdb -s /var/tmp/to_scwrl_916773618.seq -o /var/tmp/from_scwrl_916773618.pdb > /var/tmp/scwrl_916773618.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_916773618.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1480206635.pdb -s /var/tmp/to_scwrl_1480206635.seq -o /var/tmp/from_scwrl_1480206635.pdb > /var/tmp/scwrl_1480206635.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1480206635.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1419004508.pdb -s /var/tmp/to_scwrl_1419004508.seq -o /var/tmp/from_scwrl_1419004508.pdb > /var/tmp/scwrl_1419004508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1419004508.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1859254112.pdb -s /var/tmp/to_scwrl_1859254112.seq -o /var/tmp/from_scwrl_1859254112.pdb > /var/tmp/scwrl_1859254112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1859254112.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1206396153.pdb -s /var/tmp/to_scwrl_1206396153.seq -o /var/tmp/from_scwrl_1206396153.pdb > /var/tmp/scwrl_1206396153.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1206396153.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1156603128.pdb -s /var/tmp/to_scwrl_1156603128.seq -o /var/tmp/from_scwrl_1156603128.pdb > /var/tmp/scwrl_1156603128.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1156603128.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_46047884.pdb -s /var/tmp/to_scwrl_46047884.seq -o /var/tmp/from_scwrl_46047884.pdb > /var/tmp/scwrl_46047884.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_46047884.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_543405624.pdb -s /var/tmp/to_scwrl_543405624.seq -o /var/tmp/from_scwrl_543405624.pdb > /var/tmp/scwrl_543405624.log Error: Couldn't open file /var/tmp/from_scwrl_543405624.pdb or /var/tmp/from_scwrl_543405624.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_543405624_b.pdb or decoys//var/tmp/from_scwrl_543405624_b.pdb.gz for input Trying /var/tmp/from_scwrl_543405624_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_543405624_b.pdb or /var/tmp/from_scwrl_543405624_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_543405624_a.pdb or decoys//var/tmp/from_scwrl_543405624_a.pdb.gz for input Trying /var/tmp/from_scwrl_543405624_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_543405624_a.pdb or /var/tmp/from_scwrl_543405624_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_543405624.pdb or /var/tmp/from_scwrl_543405624_b.pdb or /var/tmp/from_scwrl_543405624_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_295546673.pdb -s /var/tmp/to_scwrl_295546673.seq -o /var/tmp/from_scwrl_295546673.pdb > /var/tmp/scwrl_295546673.log Error: Couldn't open file /var/tmp/from_scwrl_295546673.pdb or /var/tmp/from_scwrl_295546673.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_295546673_b.pdb or decoys//var/tmp/from_scwrl_295546673_b.pdb.gz for input Trying /var/tmp/from_scwrl_295546673_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_295546673_b.pdb or /var/tmp/from_scwrl_295546673_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_295546673_a.pdb or decoys//var/tmp/from_scwrl_295546673_a.pdb.gz for input Trying /var/tmp/from_scwrl_295546673_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_295546673_a.pdb or /var/tmp/from_scwrl_295546673_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_295546673.pdb or /var/tmp/from_scwrl_295546673_b.pdb or /var/tmp/from_scwrl_295546673_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1731038289.pdb -s /var/tmp/to_scwrl_1731038289.seq -o /var/tmp/from_scwrl_1731038289.pdb > /var/tmp/scwrl_1731038289.log Error: Couldn't open file /var/tmp/from_scwrl_1731038289.pdb or /var/tmp/from_scwrl_1731038289.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1731038289_b.pdb or decoys//var/tmp/from_scwrl_1731038289_b.pdb.gz for input Trying /var/tmp/from_scwrl_1731038289_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1731038289_b.pdb or /var/tmp/from_scwrl_1731038289_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1731038289_a.pdb or decoys//var/tmp/from_scwrl_1731038289_a.pdb.gz for input Trying /var/tmp/from_scwrl_1731038289_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1731038289_a.pdb or /var/tmp/from_scwrl_1731038289_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1731038289.pdb or /var/tmp/from_scwrl_1731038289_b.pdb or /var/tmp/from_scwrl_1731038289_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1763717520.pdb -s /var/tmp/to_scwrl_1763717520.seq -o /var/tmp/from_scwrl_1763717520.pdb > /var/tmp/scwrl_1763717520.log Error: Couldn't open file /var/tmp/from_scwrl_1763717520.pdb or /var/tmp/from_scwrl_1763717520.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1763717520_b.pdb or decoys//var/tmp/from_scwrl_1763717520_b.pdb.gz for input Trying /var/tmp/from_scwrl_1763717520_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1763717520_b.pdb or /var/tmp/from_scwrl_1763717520_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1763717520_a.pdb or decoys//var/tmp/from_scwrl_1763717520_a.pdb.gz for input Trying /var/tmp/from_scwrl_1763717520_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1763717520_a.pdb or /var/tmp/from_scwrl_1763717520_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1763717520.pdb or /var/tmp/from_scwrl_1763717520_b.pdb or /var/tmp/from_scwrl_1763717520_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1927371502.pdb -s /var/tmp/to_scwrl_1927371502.seq -o /var/tmp/from_scwrl_1927371502.pdb > /var/tmp/scwrl_1927371502.log Error: Couldn't open file /var/tmp/from_scwrl_1927371502.pdb or /var/tmp/from_scwrl_1927371502.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1927371502_b.pdb or decoys//var/tmp/from_scwrl_1927371502_b.pdb.gz for input Trying /var/tmp/from_scwrl_1927371502_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1927371502_b.pdb or /var/tmp/from_scwrl_1927371502_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1927371502_a.pdb or decoys//var/tmp/from_scwrl_1927371502_a.pdb.gz for input Trying /var/tmp/from_scwrl_1927371502_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1927371502_a.pdb or /var/tmp/from_scwrl_1927371502_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1927371502.pdb or /var/tmp/from_scwrl_1927371502_b.pdb or /var/tmp/from_scwrl_1927371502_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1377121883.pdb -s /var/tmp/to_scwrl_1377121883.seq -o /var/tmp/from_scwrl_1377121883.pdb > /var/tmp/scwrl_1377121883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1377121883.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_264208175.pdb -s /var/tmp/to_scwrl_264208175.seq -o /var/tmp/from_scwrl_264208175.pdb > /var/tmp/scwrl_264208175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_264208175.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_54785406.pdb -s /var/tmp/to_scwrl_54785406.seq -o /var/tmp/from_scwrl_54785406.pdb > /var/tmp/scwrl_54785406.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_54785406.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1951845352.pdb -s /var/tmp/to_scwrl_1951845352.seq -o /var/tmp/from_scwrl_1951845352.pdb > /var/tmp/scwrl_1951845352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1951845352.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_666983368.pdb -s /var/tmp/to_scwrl_666983368.seq -o /var/tmp/from_scwrl_666983368.pdb > /var/tmp/scwrl_666983368.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_666983368.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1357359074.pdb -s /var/tmp/to_scwrl_1357359074.seq -o /var/tmp/from_scwrl_1357359074.pdb > /var/tmp/scwrl_1357359074.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1357359074.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1836824407.pdb -s /var/tmp/to_scwrl_1836824407.seq -o /var/tmp/from_scwrl_1836824407.pdb > /var/tmp/scwrl_1836824407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1836824407.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2140932573.pdb -s /var/tmp/to_scwrl_2140932573.seq -o /var/tmp/from_scwrl_2140932573.pdb > /var/tmp/scwrl_2140932573.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2140932573.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_937161229.pdb -s /var/tmp/to_scwrl_937161229.seq -o /var/tmp/from_scwrl_937161229.pdb > /var/tmp/scwrl_937161229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_937161229.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1853735809.pdb -s /var/tmp/to_scwrl_1853735809.seq -o /var/tmp/from_scwrl_1853735809.pdb > /var/tmp/scwrl_1853735809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1853735809.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1003866003.pdb -s /var/tmp/to_scwrl_1003866003.seq -o /var/tmp/from_scwrl_1003866003.pdb > /var/tmp/scwrl_1003866003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1003866003.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2145904698.pdb -s /var/tmp/to_scwrl_2145904698.seq -o /var/tmp/from_scwrl_2145904698.pdb > /var/tmp/scwrl_2145904698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2145904698.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_721804256.pdb -s /var/tmp/to_scwrl_721804256.seq -o /var/tmp/from_scwrl_721804256.pdb > /var/tmp/scwrl_721804256.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_721804256.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_328916935.pdb -s /var/tmp/to_scwrl_328916935.seq -o /var/tmp/from_scwrl_328916935.pdb > /var/tmp/scwrl_328916935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_328916935.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_435674311.pdb -s /var/tmp/to_scwrl_435674311.seq -o /var/tmp/from_scwrl_435674311.pdb > /var/tmp/scwrl_435674311.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_435674311.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_465999869.pdb -s /var/tmp/to_scwrl_465999869.seq -o /var/tmp/from_scwrl_465999869.pdb > /var/tmp/scwrl_465999869.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_465999869.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_966681511.pdb -s /var/tmp/to_scwrl_966681511.seq -o /var/tmp/from_scwrl_966681511.pdb > /var/tmp/scwrl_966681511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_966681511.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1195015386.pdb -s /var/tmp/to_scwrl_1195015386.seq -o /var/tmp/from_scwrl_1195015386.pdb > /var/tmp/scwrl_1195015386.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1195015386.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1470903648.pdb -s /var/tmp/to_scwrl_1470903648.seq -o /var/tmp/from_scwrl_1470903648.pdb > /var/tmp/scwrl_1470903648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1470903648.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1883455129.pdb -s /var/tmp/to_scwrl_1883455129.seq -o /var/tmp/from_scwrl_1883455129.pdb > /var/tmp/scwrl_1883455129.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1883455129.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_527738375.pdb -s /var/tmp/to_scwrl_527738375.seq -o /var/tmp/from_scwrl_527738375.pdb > /var/tmp/scwrl_527738375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_527738375.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_742424510.pdb -s /var/tmp/to_scwrl_742424510.seq -o /var/tmp/from_scwrl_742424510.pdb > /var/tmp/scwrl_742424510.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_742424510.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1595225594.pdb -s /var/tmp/to_scwrl_1595225594.seq -o /var/tmp/from_scwrl_1595225594.pdb > /var/tmp/scwrl_1595225594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1595225594.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1734134528.pdb -s /var/tmp/to_scwrl_1734134528.seq -o /var/tmp/from_scwrl_1734134528.pdb > /var/tmp/scwrl_1734134528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1734134528.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1899027639.pdb -s /var/tmp/to_scwrl_1899027639.seq -o /var/tmp/from_scwrl_1899027639.pdb > /var/tmp/scwrl_1899027639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899027639.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1641273478.pdb -s /var/tmp/to_scwrl_1641273478.seq -o /var/tmp/from_scwrl_1641273478.pdb > /var/tmp/scwrl_1641273478.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1641273478.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_130056506.pdb -s /var/tmp/to_scwrl_130056506.seq -o /var/tmp/from_scwrl_130056506.pdb > /var/tmp/scwrl_130056506.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_130056506.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_47090665.pdb -s /var/tmp/to_scwrl_47090665.seq -o /var/tmp/from_scwrl_47090665.pdb > /var/tmp/scwrl_47090665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_47090665.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1224828121.pdb -s /var/tmp/to_scwrl_1224828121.seq -o /var/tmp/from_scwrl_1224828121.pdb > /var/tmp/scwrl_1224828121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1224828121.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1893774026.pdb -s /var/tmp/to_scwrl_1893774026.seq -o /var/tmp/from_scwrl_1893774026.pdb > /var/tmp/scwrl_1893774026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1893774026.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1974462167.pdb -s /var/tmp/to_scwrl_1974462167.seq -o /var/tmp/from_scwrl_1974462167.pdb > /var/tmp/scwrl_1974462167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1974462167.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_454466358.pdb -s /var/tmp/to_scwrl_454466358.seq -o /var/tmp/from_scwrl_454466358.pdb > /var/tmp/scwrl_454466358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_454466358.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_10498555.pdb -s /var/tmp/to_scwrl_10498555.seq -o /var/tmp/from_scwrl_10498555.pdb > /var/tmp/scwrl_10498555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_10498555.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2029247574.pdb -s /var/tmp/to_scwrl_2029247574.seq -o /var/tmp/from_scwrl_2029247574.pdb > /var/tmp/scwrl_2029247574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2029247574.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_258828063.pdb -s /var/tmp/to_scwrl_258828063.seq -o /var/tmp/from_scwrl_258828063.pdb > /var/tmp/scwrl_258828063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_258828063.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_677481923.pdb -s /var/tmp/to_scwrl_677481923.seq -o /var/tmp/from_scwrl_677481923.pdb > /var/tmp/scwrl_677481923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_677481923.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1239123001.pdb -s /var/tmp/to_scwrl_1239123001.seq -o /var/tmp/from_scwrl_1239123001.pdb > /var/tmp/scwrl_1239123001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1239123001.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2095652470.pdb -s /var/tmp/to_scwrl_2095652470.seq -o /var/tmp/from_scwrl_2095652470.pdb > /var/tmp/scwrl_2095652470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2095652470.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_670930849.pdb -s /var/tmp/to_scwrl_670930849.seq -o /var/tmp/from_scwrl_670930849.pdb > /var/tmp/scwrl_670930849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_670930849.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_28800584.pdb -s /var/tmp/to_scwrl_28800584.seq -o /var/tmp/from_scwrl_28800584.pdb > /var/tmp/scwrl_28800584.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28800584.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1801904632.pdb -s /var/tmp/to_scwrl_1801904632.seq -o /var/tmp/from_scwrl_1801904632.pdb > /var/tmp/scwrl_1801904632.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1801904632.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1674796852.pdb -s /var/tmp/to_scwrl_1674796852.seq -o /var/tmp/from_scwrl_1674796852.pdb > /var/tmp/scwrl_1674796852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1674796852.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_27221635.pdb -s /var/tmp/to_scwrl_27221635.seq -o /var/tmp/from_scwrl_27221635.pdb > /var/tmp/scwrl_27221635.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_27221635.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_376225242.pdb -s /var/tmp/to_scwrl_376225242.seq -o /var/tmp/from_scwrl_376225242.pdb > /var/tmp/scwrl_376225242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_376225242.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2003713787.pdb -s /var/tmp/to_scwrl_2003713787.seq -o /var/tmp/from_scwrl_2003713787.pdb > /var/tmp/scwrl_2003713787.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2003713787.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_462895946.pdb -s /var/tmp/to_scwrl_462895946.seq -o /var/tmp/from_scwrl_462895946.pdb > /var/tmp/scwrl_462895946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_462895946.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_842225111.pdb -s /var/tmp/to_scwrl_842225111.seq -o /var/tmp/from_scwrl_842225111.pdb > /var/tmp/scwrl_842225111.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_842225111.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_822911651.pdb -s /var/tmp/to_scwrl_822911651.seq -o /var/tmp/from_scwrl_822911651.pdb > /var/tmp/scwrl_822911651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_822911651.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1657911332.pdb -s /var/tmp/to_scwrl_1657911332.seq -o /var/tmp/from_scwrl_1657911332.pdb > /var/tmp/scwrl_1657911332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1657911332.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_165645112.pdb -s /var/tmp/to_scwrl_165645112.seq -o /var/tmp/from_scwrl_165645112.pdb > /var/tmp/scwrl_165645112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_165645112.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_558883133.pdb -s /var/tmp/to_scwrl_558883133.seq -o /var/tmp/from_scwrl_558883133.pdb > /var/tmp/scwrl_558883133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_558883133.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_38166060.pdb -s /var/tmp/to_scwrl_38166060.seq -o /var/tmp/from_scwrl_38166060.pdb > /var/tmp/scwrl_38166060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_38166060.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_908069622.pdb -s /var/tmp/to_scwrl_908069622.seq -o /var/tmp/from_scwrl_908069622.pdb > /var/tmp/scwrl_908069622.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_908069622.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_6625081.pdb -s /var/tmp/to_scwrl_6625081.seq -o /var/tmp/from_scwrl_6625081.pdb > /var/tmp/scwrl_6625081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_6625081.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1772300589.pdb -s /var/tmp/to_scwrl_1772300589.seq -o /var/tmp/from_scwrl_1772300589.pdb > /var/tmp/scwrl_1772300589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1772300589.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_659613614.pdb -s /var/tmp/to_scwrl_659613614.seq -o /var/tmp/from_scwrl_659613614.pdb > /var/tmp/scwrl_659613614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_659613614.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1647898559.pdb -s /var/tmp/to_scwrl_1647898559.seq -o /var/tmp/from_scwrl_1647898559.pdb > /var/tmp/scwrl_1647898559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1647898559.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1902357095.pdb -s /var/tmp/to_scwrl_1902357095.seq -o /var/tmp/from_scwrl_1902357095.pdb > /var/tmp/scwrl_1902357095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1902357095.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_706704279.pdb -s /var/tmp/to_scwrl_706704279.seq -o /var/tmp/from_scwrl_706704279.pdb > /var/tmp/scwrl_706704279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_706704279.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_725243034.pdb -s /var/tmp/to_scwrl_725243034.seq -o /var/tmp/from_scwrl_725243034.pdb > /var/tmp/scwrl_725243034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_725243034.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1648647474.pdb -s /var/tmp/to_scwrl_1648647474.seq -o /var/tmp/from_scwrl_1648647474.pdb > /var/tmp/scwrl_1648647474.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1648647474.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_533682800.pdb -s /var/tmp/to_scwrl_533682800.seq -o /var/tmp/from_scwrl_533682800.pdb > /var/tmp/scwrl_533682800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_533682800.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1179709392.pdb -s /var/tmp/to_scwrl_1179709392.seq -o /var/tmp/from_scwrl_1179709392.pdb > /var/tmp/scwrl_1179709392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1179709392.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1659146029.pdb -s /var/tmp/to_scwrl_1659146029.seq -o /var/tmp/from_scwrl_1659146029.pdb > /var/tmp/scwrl_1659146029.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1659146029.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_415446727.pdb -s /var/tmp/to_scwrl_415446727.seq -o /var/tmp/from_scwrl_415446727.pdb > /var/tmp/scwrl_415446727.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_415446727.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1438537455.pdb -s /var/tmp/to_scwrl_1438537455.seq -o /var/tmp/from_scwrl_1438537455.pdb > /var/tmp/scwrl_1438537455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1438537455.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_189144305.pdb -s /var/tmp/to_scwrl_189144305.seq -o /var/tmp/from_scwrl_189144305.pdb > /var/tmp/scwrl_189144305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_189144305.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1654569728.pdb -s /var/tmp/to_scwrl_1654569728.seq -o /var/tmp/from_scwrl_1654569728.pdb > /var/tmp/scwrl_1654569728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1654569728.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1386706279.pdb -s /var/tmp/to_scwrl_1386706279.seq -o /var/tmp/from_scwrl_1386706279.pdb > /var/tmp/scwrl_1386706279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1386706279.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_860075155.pdb -s /var/tmp/to_scwrl_860075155.seq -o /var/tmp/from_scwrl_860075155.pdb > /var/tmp/scwrl_860075155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_860075155.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1683370312.pdb -s /var/tmp/to_scwrl_1683370312.seq -o /var/tmp/from_scwrl_1683370312.pdb > /var/tmp/scwrl_1683370312.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1683370312.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1041127265.pdb -s /var/tmp/to_scwrl_1041127265.seq -o /var/tmp/from_scwrl_1041127265.pdb > /var/tmp/scwrl_1041127265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1041127265.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_387388360.pdb -s /var/tmp/to_scwrl_387388360.seq -o /var/tmp/from_scwrl_387388360.pdb > /var/tmp/scwrl_387388360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_387388360.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1710591947.pdb -s /var/tmp/to_scwrl_1710591947.seq -o /var/tmp/from_scwrl_1710591947.pdb > /var/tmp/scwrl_1710591947.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1710591947.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1417352506.pdb -s /var/tmp/to_scwrl_1417352506.seq -o /var/tmp/from_scwrl_1417352506.pdb > /var/tmp/scwrl_1417352506.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1417352506.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_243618500.pdb -s /var/tmp/to_scwrl_243618500.seq -o /var/tmp/from_scwrl_243618500.pdb > /var/tmp/scwrl_243618500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_243618500.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_26004246.pdb -s /var/tmp/to_scwrl_26004246.seq -o /var/tmp/from_scwrl_26004246.pdb > /var/tmp/scwrl_26004246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_26004246.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_112093970.pdb -s /var/tmp/to_scwrl_112093970.seq -o /var/tmp/from_scwrl_112093970.pdb > /var/tmp/scwrl_112093970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_112093970.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1066530151.pdb -s /var/tmp/to_scwrl_1066530151.seq -o /var/tmp/from_scwrl_1066530151.pdb > /var/tmp/scwrl_1066530151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066530151.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1683915578.pdb -s /var/tmp/to_scwrl_1683915578.seq -o /var/tmp/from_scwrl_1683915578.pdb > /var/tmp/scwrl_1683915578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1683915578.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_277739082.pdb -s /var/tmp/to_scwrl_277739082.seq -o /var/tmp/from_scwrl_277739082.pdb > /var/tmp/scwrl_277739082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_277739082.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1625413284.pdb -s /var/tmp/to_scwrl_1625413284.seq -o /var/tmp/from_scwrl_1625413284.pdb > /var/tmp/scwrl_1625413284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1625413284.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1722081639.pdb -s /var/tmp/to_scwrl_1722081639.seq -o /var/tmp/from_scwrl_1722081639.pdb > /var/tmp/scwrl_1722081639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1722081639.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1185808704.pdb -s /var/tmp/to_scwrl_1185808704.seq -o /var/tmp/from_scwrl_1185808704.pdb > /var/tmp/scwrl_1185808704.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1185808704.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1632038365.pdb -s /var/tmp/to_scwrl_1632038365.seq -o /var/tmp/from_scwrl_1632038365.pdb > /var/tmp/scwrl_1632038365.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1632038365.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1346898581.pdb -s /var/tmp/to_scwrl_1346898581.seq -o /var/tmp/from_scwrl_1346898581.pdb > /var/tmp/scwrl_1346898581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1346898581.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1845422318.pdb -s /var/tmp/to_scwrl_1845422318.seq -o /var/tmp/from_scwrl_1845422318.pdb > /var/tmp/scwrl_1845422318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1845422318.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1132453277.pdb -s /var/tmp/to_scwrl_1132453277.seq -o /var/tmp/from_scwrl_1132453277.pdb > /var/tmp/scwrl_1132453277.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1132453277.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1101772029.pdb -s /var/tmp/to_scwrl_1101772029.seq -o /var/tmp/from_scwrl_1101772029.pdb > /var/tmp/scwrl_1101772029.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1101772029.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_404642951.pdb -s /var/tmp/to_scwrl_404642951.seq -o /var/tmp/from_scwrl_404642951.pdb > /var/tmp/scwrl_404642951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_404642951.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1857696312.pdb -s /var/tmp/to_scwrl_1857696312.seq -o /var/tmp/from_scwrl_1857696312.pdb > /var/tmp/scwrl_1857696312.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857696312.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_602935857.pdb -s /var/tmp/to_scwrl_602935857.seq -o /var/tmp/from_scwrl_602935857.pdb > /var/tmp/scwrl_602935857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_602935857.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_938325751.pdb -s /var/tmp/to_scwrl_938325751.seq -o /var/tmp/from_scwrl_938325751.pdb > /var/tmp/scwrl_938325751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_938325751.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_889922058.pdb -s /var/tmp/to_scwrl_889922058.seq -o /var/tmp/from_scwrl_889922058.pdb > /var/tmp/scwrl_889922058.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_889922058.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_114598240.pdb -s /var/tmp/to_scwrl_114598240.seq -o /var/tmp/from_scwrl_114598240.pdb > /var/tmp/scwrl_114598240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_114598240.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1353772477.pdb -s /var/tmp/to_scwrl_1353772477.seq -o /var/tmp/from_scwrl_1353772477.pdb > /var/tmp/scwrl_1353772477.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1353772477.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_180975866.pdb -s /var/tmp/to_scwrl_180975866.seq -o /var/tmp/from_scwrl_180975866.pdb > /var/tmp/scwrl_180975866.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_180975866.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_303742545.pdb -s /var/tmp/to_scwrl_303742545.seq -o /var/tmp/from_scwrl_303742545.pdb > /var/tmp/scwrl_303742545.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_303742545.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_860858559.pdb -s /var/tmp/to_scwrl_860858559.seq -o /var/tmp/from_scwrl_860858559.pdb > /var/tmp/scwrl_860858559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_860858559.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1567682145.pdb -s /var/tmp/to_scwrl_1567682145.seq -o /var/tmp/from_scwrl_1567682145.pdb > /var/tmp/scwrl_1567682145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1567682145.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1163817699.pdb -s /var/tmp/to_scwrl_1163817699.seq -o /var/tmp/from_scwrl_1163817699.pdb > /var/tmp/scwrl_1163817699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1163817699.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_396745225.pdb -s /var/tmp/to_scwrl_396745225.seq -o /var/tmp/from_scwrl_396745225.pdb > /var/tmp/scwrl_396745225.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_396745225.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_461325764.pdb -s /var/tmp/to_scwrl_461325764.seq -o /var/tmp/from_scwrl_461325764.pdb > /var/tmp/scwrl_461325764.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_461325764.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1551206059.pdb -s /var/tmp/to_scwrl_1551206059.seq -o /var/tmp/from_scwrl_1551206059.pdb > /var/tmp/scwrl_1551206059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1551206059.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2107337172.pdb -s /var/tmp/to_scwrl_2107337172.seq -o /var/tmp/from_scwrl_2107337172.pdb > /var/tmp/scwrl_2107337172.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2107337172.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1878678270.pdb -s /var/tmp/to_scwrl_1878678270.seq -o /var/tmp/from_scwrl_1878678270.pdb > /var/tmp/scwrl_1878678270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1878678270.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1794824559.pdb -s /var/tmp/to_scwrl_1794824559.seq -o /var/tmp/from_scwrl_1794824559.pdb > /var/tmp/scwrl_1794824559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1794824559.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2133341419.pdb -s /var/tmp/to_scwrl_2133341419.seq -o /var/tmp/from_scwrl_2133341419.pdb > /var/tmp/scwrl_2133341419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2133341419.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1990772241.pdb -s /var/tmp/to_scwrl_1990772241.seq -o /var/tmp/from_scwrl_1990772241.pdb > /var/tmp/scwrl_1990772241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1990772241.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_713871064.pdb -s /var/tmp/to_scwrl_713871064.seq -o /var/tmp/from_scwrl_713871064.pdb > /var/tmp/scwrl_713871064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_713871064.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1669773350.pdb -s /var/tmp/to_scwrl_1669773350.seq -o /var/tmp/from_scwrl_1669773350.pdb > /var/tmp/scwrl_1669773350.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1669773350.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_121027676.pdb -s /var/tmp/to_scwrl_121027676.seq -o /var/tmp/from_scwrl_121027676.pdb > /var/tmp/scwrl_121027676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_121027676.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_191800701.pdb -s /var/tmp/to_scwrl_191800701.seq -o /var/tmp/from_scwrl_191800701.pdb > /var/tmp/scwrl_191800701.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_191800701.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1244371342.pdb -s /var/tmp/to_scwrl_1244371342.seq -o /var/tmp/from_scwrl_1244371342.pdb > /var/tmp/scwrl_1244371342.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1244371342.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1306836380.pdb -s /var/tmp/to_scwrl_1306836380.seq -o /var/tmp/from_scwrl_1306836380.pdb > /var/tmp/scwrl_1306836380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1306836380.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1823839066.pdb -s /var/tmp/to_scwrl_1823839066.seq -o /var/tmp/from_scwrl_1823839066.pdb > /var/tmp/scwrl_1823839066.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1823839066.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_443786277.pdb -s /var/tmp/to_scwrl_443786277.seq -o /var/tmp/from_scwrl_443786277.pdb > /var/tmp/scwrl_443786277.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_443786277.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1004775053.pdb -s /var/tmp/to_scwrl_1004775053.seq -o /var/tmp/from_scwrl_1004775053.pdb > /var/tmp/scwrl_1004775053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1004775053.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_808808697.pdb -s /var/tmp/to_scwrl_808808697.seq -o /var/tmp/from_scwrl_808808697.pdb > /var/tmp/scwrl_808808697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_808808697.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1545558306.pdb -s /var/tmp/to_scwrl_1545558306.seq -o /var/tmp/from_scwrl_1545558306.pdb > /var/tmp/scwrl_1545558306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1545558306.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1409418003.pdb -s /var/tmp/to_scwrl_1409418003.seq -o /var/tmp/from_scwrl_1409418003.pdb > /var/tmp/scwrl_1409418003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1409418003.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_519021362.pdb -s /var/tmp/to_scwrl_519021362.seq -o /var/tmp/from_scwrl_519021362.pdb > /var/tmp/scwrl_519021362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_519021362.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1010517.pdb -s /var/tmp/to_scwrl_1010517.seq -o /var/tmp/from_scwrl_1010517.pdb > /var/tmp/scwrl_1010517.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1010517.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_200260107.pdb -s /var/tmp/to_scwrl_200260107.seq -o /var/tmp/from_scwrl_200260107.pdb > /var/tmp/scwrl_200260107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_200260107.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1408943419.pdb -s /var/tmp/to_scwrl_1408943419.seq -o /var/tmp/from_scwrl_1408943419.pdb > /var/tmp/scwrl_1408943419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1408943419.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_115608757.pdb -s /var/tmp/to_scwrl_115608757.seq -o /var/tmp/from_scwrl_115608757.pdb > /var/tmp/scwrl_115608757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_115608757.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1554032584.pdb -s /var/tmp/to_scwrl_1554032584.seq -o /var/tmp/from_scwrl_1554032584.pdb > /var/tmp/scwrl_1554032584.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1554032584.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1589919286.pdb -s /var/tmp/to_scwrl_1589919286.seq -o /var/tmp/from_scwrl_1589919286.pdb > /var/tmp/scwrl_1589919286.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1589919286.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_419351302.pdb -s /var/tmp/to_scwrl_419351302.seq -o /var/tmp/from_scwrl_419351302.pdb > /var/tmp/scwrl_419351302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_419351302.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_267407496.pdb -s /var/tmp/to_scwrl_267407496.seq -o /var/tmp/from_scwrl_267407496.pdb > /var/tmp/scwrl_267407496.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_267407496.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1010117785.pdb -s /var/tmp/to_scwrl_1010117785.seq -o /var/tmp/from_scwrl_1010117785.pdb > /var/tmp/scwrl_1010117785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1010117785.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1583169002.pdb -s /var/tmp/to_scwrl_1583169002.seq -o /var/tmp/from_scwrl_1583169002.pdb > /var/tmp/scwrl_1583169002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1583169002.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_664152721.pdb -s /var/tmp/to_scwrl_664152721.seq -o /var/tmp/from_scwrl_664152721.pdb > /var/tmp/scwrl_664152721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_664152721.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1471443548.pdb -s /var/tmp/to_scwrl_1471443548.seq -o /var/tmp/from_scwrl_1471443548.pdb > /var/tmp/scwrl_1471443548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1471443548.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_986891415.pdb -s /var/tmp/to_scwrl_986891415.seq -o /var/tmp/from_scwrl_986891415.pdb > /var/tmp/scwrl_986891415.log sh: line 1: 30833 Killed scwrl3 -i /var/tmp/to_scwrl_986891415.pdb -s /var/tmp/to_scwrl_986891415.seq -o /var/tmp/from_scwrl_986891415.pdb >/var/tmp/scwrl_986891415.log Error: Couldn't open file /var/tmp/from_scwrl_986891415.pdb or /var/tmp/from_scwrl_986891415.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_986891415_b.pdb or decoys//var/tmp/from_scwrl_986891415_b.pdb.gz for input Trying /var/tmp/from_scwrl_986891415_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_986891415_b.pdb or /var/tmp/from_scwrl_986891415_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_986891415_a.pdb or decoys//var/tmp/from_scwrl_986891415_a.pdb.gz for input Trying /var/tmp/from_scwrl_986891415_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_986891415_a.pdb or /var/tmp/from_scwrl_986891415_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_986891415.pdb or /var/tmp/from_scwrl_986891415_b.pdb or /var/tmp/from_scwrl_986891415_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_624006247.pdb -s /var/tmp/to_scwrl_624006247.seq -o /var/tmp/from_scwrl_624006247.pdb > /var/tmp/scwrl_624006247.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_624006247.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1202638172.pdb -s /var/tmp/to_scwrl_1202638172.seq -o /var/tmp/from_scwrl_1202638172.pdb > /var/tmp/scwrl_1202638172.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1202638172.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_634232328.pdb -s /var/tmp/to_scwrl_634232328.seq -o /var/tmp/from_scwrl_634232328.pdb > /var/tmp/scwrl_634232328.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_634232328.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_609864019.pdb -s /var/tmp/to_scwrl_609864019.seq -o /var/tmp/from_scwrl_609864019.pdb > /var/tmp/scwrl_609864019.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_609864019.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1045926767.pdb -s /var/tmp/to_scwrl_1045926767.seq -o /var/tmp/from_scwrl_1045926767.pdb > /var/tmp/scwrl_1045926767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1045926767.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1348103391.pdb -s /var/tmp/to_scwrl_1348103391.seq -o /var/tmp/from_scwrl_1348103391.pdb > /var/tmp/scwrl_1348103391.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1348103391.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_132153722.pdb -s /var/tmp/to_scwrl_132153722.seq -o /var/tmp/from_scwrl_132153722.pdb > /var/tmp/scwrl_132153722.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_132153722.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1166954442.pdb -s /var/tmp/to_scwrl_1166954442.seq -o /var/tmp/from_scwrl_1166954442.pdb > /var/tmp/scwrl_1166954442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1166954442.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1539904092.pdb -s /var/tmp/to_scwrl_1539904092.seq -o /var/tmp/from_scwrl_1539904092.pdb > /var/tmp/scwrl_1539904092.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1539904092.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1376525065.pdb -s /var/tmp/to_scwrl_1376525065.seq -o /var/tmp/from_scwrl_1376525065.pdb > /var/tmp/scwrl_1376525065.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1376525065.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_326307177.pdb -s /var/tmp/to_scwrl_326307177.seq -o /var/tmp/from_scwrl_326307177.pdb > /var/tmp/scwrl_326307177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_326307177.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1216259511.pdb -s /var/tmp/to_scwrl_1216259511.seq -o /var/tmp/from_scwrl_1216259511.pdb > /var/tmp/scwrl_1216259511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1216259511.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1820311342.pdb -s /var/tmp/to_scwrl_1820311342.seq -o /var/tmp/from_scwrl_1820311342.pdb > /var/tmp/scwrl_1820311342.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1820311342.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1331082229.pdb -s /var/tmp/to_scwrl_1331082229.seq -o /var/tmp/from_scwrl_1331082229.pdb > /var/tmp/scwrl_1331082229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331082229.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2025068208.pdb -s /var/tmp/to_scwrl_2025068208.seq -o /var/tmp/from_scwrl_2025068208.pdb > /var/tmp/scwrl_2025068208.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2025068208.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1218386002.pdb -s /var/tmp/to_scwrl_1218386002.seq -o /var/tmp/from_scwrl_1218386002.pdb > /var/tmp/scwrl_1218386002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1218386002.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_593016586.pdb -s /var/tmp/to_scwrl_593016586.seq -o /var/tmp/from_scwrl_593016586.pdb > /var/tmp/scwrl_593016586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_593016586.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_396605924.pdb -s /var/tmp/to_scwrl_396605924.seq -o /var/tmp/from_scwrl_396605924.pdb > /var/tmp/scwrl_396605924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_396605924.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1219396519.pdb -s /var/tmp/to_scwrl_1219396519.seq -o /var/tmp/from_scwrl_1219396519.pdb > /var/tmp/scwrl_1219396519.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1219396519.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_793276693.pdb -s /var/tmp/to_scwrl_793276693.seq -o /var/tmp/from_scwrl_793276693.pdb > /var/tmp/scwrl_793276693.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_793276693.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1805549343.pdb -s /var/tmp/to_scwrl_1805549343.seq -o /var/tmp/from_scwrl_1805549343.pdb > /var/tmp/scwrl_1805549343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1805549343.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1335005276.pdb -s /var/tmp/to_scwrl_1335005276.seq -o /var/tmp/from_scwrl_1335005276.pdb > /var/tmp/scwrl_1335005276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1335005276.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_199825630.pdb -s /var/tmp/to_scwrl_199825630.seq -o /var/tmp/from_scwrl_199825630.pdb > /var/tmp/scwrl_199825630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_199825630.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 Skipped atom 207, because occupancy 1.0000000e+00 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1247984982.pdb -s /var/tmp/to_scwrl_1247984982.seq -o /var/tmp/from_scwrl_1247984982.pdb > /var/tmp/scwrl_1247984982.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1247984982.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1754356578.pdb -s /var/tmp/to_scwrl_1754356578.seq -o /var/tmp/from_scwrl_1754356578.pdb > /var/tmp/scwrl_1754356578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1754356578.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_467233126.pdb -s /var/tmp/to_scwrl_467233126.seq -o /var/tmp/from_scwrl_467233126.pdb > /var/tmp/scwrl_467233126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_467233126.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_110619121.pdb -s /var/tmp/to_scwrl_110619121.seq -o /var/tmp/from_scwrl_110619121.pdb > /var/tmp/scwrl_110619121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_110619121.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1190041933.pdb -s /var/tmp/to_scwrl_1190041933.seq -o /var/tmp/from_scwrl_1190041933.pdb > /var/tmp/scwrl_1190041933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1190041933.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1131385847.pdb -s /var/tmp/to_scwrl_1131385847.seq -o /var/tmp/from_scwrl_1131385847.pdb > /var/tmp/scwrl_1131385847.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1131385847.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1582062669.pdb -s /var/tmp/to_scwrl_1582062669.seq -o /var/tmp/from_scwrl_1582062669.pdb > /var/tmp/scwrl_1582062669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1582062669.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_29449702.pdb -s /var/tmp/to_scwrl_29449702.seq -o /var/tmp/from_scwrl_29449702.pdb > /var/tmp/scwrl_29449702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_29449702.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1755392094.pdb -s /var/tmp/to_scwrl_1755392094.seq -o /var/tmp/from_scwrl_1755392094.pdb > /var/tmp/scwrl_1755392094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1755392094.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_637217195.pdb -s /var/tmp/to_scwrl_637217195.seq -o /var/tmp/from_scwrl_637217195.pdb > /var/tmp/scwrl_637217195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_637217195.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_663682030.pdb -s /var/tmp/to_scwrl_663682030.seq -o /var/tmp/from_scwrl_663682030.pdb > /var/tmp/scwrl_663682030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_663682030.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0312)L66.O and (T0312)M67.N only 0.000 apart, marking (T0312)M67.N as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_217772466.pdb -s /var/tmp/to_scwrl_217772466.seq -o /var/tmp/from_scwrl_217772466.pdb > /var/tmp/scwrl_217772466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_217772466.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0312)E131.O and (T0312)Q132.N only 0.000 apart, marking (T0312)Q132.N as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1683143961.pdb -s /var/tmp/to_scwrl_1683143961.seq -o /var/tmp/from_scwrl_1683143961.pdb > /var/tmp/scwrl_1683143961.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1683143961.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2011785421.pdb -s /var/tmp/to_scwrl_2011785421.seq -o /var/tmp/from_scwrl_2011785421.pdb > /var/tmp/scwrl_2011785421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2011785421.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_349926188.pdb -s /var/tmp/to_scwrl_349926188.seq -o /var/tmp/from_scwrl_349926188.pdb > /var/tmp/scwrl_349926188.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_349926188.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_702614758.pdb -s /var/tmp/to_scwrl_702614758.seq -o /var/tmp/from_scwrl_702614758.pdb > /var/tmp/scwrl_702614758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_702614758.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1404205866.pdb -s /var/tmp/to_scwrl_1404205866.seq -o /var/tmp/from_scwrl_1404205866.pdb > /var/tmp/scwrl_1404205866.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1404205866.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1726451253.pdb -s /var/tmp/to_scwrl_1726451253.seq -o /var/tmp/from_scwrl_1726451253.pdb > /var/tmp/scwrl_1726451253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1726451253.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1028921935.pdb -s /var/tmp/to_scwrl_1028921935.seq -o /var/tmp/from_scwrl_1028921935.pdb > /var/tmp/scwrl_1028921935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1028921935.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_472981731.pdb -s /var/tmp/to_scwrl_472981731.seq -o /var/tmp/from_scwrl_472981731.pdb > /var/tmp/scwrl_472981731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_472981731.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1399278949.pdb -s /var/tmp/to_scwrl_1399278949.seq -o /var/tmp/from_scwrl_1399278949.pdb > /var/tmp/scwrl_1399278949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1399278949.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_212520517.pdb -s /var/tmp/to_scwrl_212520517.seq -o /var/tmp/from_scwrl_212520517.pdb > /var/tmp/scwrl_212520517.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_212520517.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_350566292.pdb -s /var/tmp/to_scwrl_350566292.seq -o /var/tmp/from_scwrl_350566292.pdb > /var/tmp/scwrl_350566292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_350566292.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_470181305.pdb -s /var/tmp/to_scwrl_470181305.seq -o /var/tmp/from_scwrl_470181305.pdb > /var/tmp/scwrl_470181305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_470181305.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_805537103.pdb -s /var/tmp/to_scwrl_805537103.seq -o /var/tmp/from_scwrl_805537103.pdb > /var/tmp/scwrl_805537103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_805537103.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_747172216.pdb -s /var/tmp/to_scwrl_747172216.seq -o /var/tmp/from_scwrl_747172216.pdb > /var/tmp/scwrl_747172216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_747172216.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 138 in servers/nFOLD_TS2.pdb.gz # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1689577824.pdb -s /var/tmp/to_scwrl_1689577824.seq -o /var/tmp/from_scwrl_1689577824.pdb > /var/tmp/scwrl_1689577824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1689577824.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1598813795.pdb -s /var/tmp/to_scwrl_1598813795.seq -o /var/tmp/from_scwrl_1598813795.pdb > /var/tmp/scwrl_1598813795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1598813795.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_405237913.pdb -s /var/tmp/to_scwrl_405237913.seq -o /var/tmp/from_scwrl_405237913.pdb > /var/tmp/scwrl_405237913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_405237913.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_877099454.pdb -s /var/tmp/to_scwrl_877099454.seq -o /var/tmp/from_scwrl_877099454.pdb > /var/tmp/scwrl_877099454.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_877099454.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1798639425.pdb -s /var/tmp/to_scwrl_1798639425.seq -o /var/tmp/from_scwrl_1798639425.pdb > /var/tmp/scwrl_1798639425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1798639425.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1653222895.pdb -s /var/tmp/to_scwrl_1653222895.seq -o /var/tmp/from_scwrl_1653222895.pdb > /var/tmp/scwrl_1653222895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1653222895.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 35.1357 sec, elapsed time= 366.696 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = 378.541 shub_TS1 costs 0 real_cost = 376.108 panther2_TS1-scwrl costs 0 real_cost = 404.667 panther2_TS1 costs 0 real_cost = 507.122 nFOLD_TS5-scwrl costs 0 real_cost = 367.342 nFOLD_TS5 costs 0 real_cost = 435.958 nFOLD_TS4-scwrl costs 0 real_cost = 367.342 nFOLD_TS4 costs 0 real_cost = 435.958 nFOLD_TS3-scwrl costs 0 real_cost = 368.584 nFOLD_TS3 costs 0 real_cost = 436.99 nFOLD_TS2-scwrl costs 0 real_cost = 459.671 nFOLD_TS2 costs 0 real_cost = 503.876 nFOLD_TS1-scwrl costs 0 real_cost = 367.342 nFOLD_TS1 costs 0 real_cost = 435.958 mGen-3D_TS1-scwrl costs 0 real_cost = 377.129 mGen-3D_TS1 costs 0 real_cost = 372.384 keasar-server_TS5-scwrl costs 0 real_cost = 263.701 keasar-server_TS5 costs 0 real_cost = 269.097 keasar-server_TS4-scwrl costs 0 real_cost = 132.956 keasar-server_TS4 costs 0 real_cost = 141.246 keasar-server_TS3-scwrl costs 0 real_cost = 313.149 keasar-server_TS3 costs 0 real_cost = 314.807 keasar-server_TS2-scwrl costs 0 real_cost = 187.262 keasar-server_TS2 costs 0 real_cost = 193.843 keasar-server_TS1-scwrl costs 0 real_cost = 136.577 keasar-server_TS1 costs 0 real_cost = 147.994 karypis.srv_TS5-scwrl costs 0 real_cost = 385.43 karypis.srv_TS5 costs 0 real_cost = 381.731 karypis.srv_TS4-scwrl costs 0 real_cost = 404.356 karypis.srv_TS4 costs 0 real_cost = 400.815 karypis.srv_TS3-scwrl costs 0 real_cost = 344.856 karypis.srv_TS3 costs 0 real_cost = 344.848 karypis.srv_TS2-scwrl costs 0 real_cost = 332.285 karypis.srv_TS2 costs 0 real_cost = 329.532 karypis.srv_TS1-scwrl costs 0 real_cost = 336.032 karypis.srv_TS1 costs 0 real_cost = 334.203 karypis.srv.4_TS5-scwrl costs 0 real_cost = 298.645 karypis.srv.4_TS5 costs 0 real_cost = 298.645 karypis.srv.4_TS4-scwrl costs 0 real_cost = 320.32 karypis.srv.4_TS4 costs 0 real_cost = 323.164 karypis.srv.4_TS3-scwrl costs 0 real_cost = 335.503 karypis.srv.4_TS3 costs 0 real_cost = 335.062 karypis.srv.4_TS2-scwrl costs 0 real_cost = 359.667 karypis.srv.4_TS2 costs 0 real_cost = 359.667 karypis.srv.4_TS1-scwrl costs 0 real_cost = 297.854 karypis.srv.4_TS1 costs 0 real_cost = 297.854 karypis.srv.2_TS5-scwrl costs 0 real_cost = 335.898 karypis.srv.2_TS5 costs 0 real_cost = 335.687 karypis.srv.2_TS4-scwrl costs 0 real_cost = 357.572 karypis.srv.2_TS4 costs 0 real_cost = 357.572 karypis.srv.2_TS3-scwrl costs 0 real_cost = 260.928 karypis.srv.2_TS3 costs 0 real_cost = 260.928 karypis.srv.2_TS2-scwrl costs 0 real_cost = 294.606 karypis.srv.2_TS2 costs 0 real_cost = 294.606 karypis.srv.2_TS1-scwrl costs 0 real_cost = 291.982 karypis.srv.2_TS1 costs 0 real_cost = 291.982 forecast-s_AL5-scwrl costs 0 real_cost = 339.915 forecast-s_AL5 costs 0 real_cost = 441.163 forecast-s_AL4-scwrl costs 0 real_cost = 476.536 forecast-s_AL4 costs 0 real_cost = 531.895 forecast-s_AL3-scwrl costs 0 real_cost = 401.093 forecast-s_AL3 costs 0 real_cost = 469.691 forecast-s_AL2-scwrl costs 0 real_cost = 394.358 forecast-s_AL2 costs 0 real_cost = 483.201 forecast-s_AL1-scwrl costs 0 real_cost = 414.834 forecast-s_AL1 costs 0 real_cost = 509.805 beautshotbase_TS1-scwrl costs 0 real_cost = 390.332 beautshotbase_TS1 costs 0 real_cost = 388.978 beautshot_TS1-scwrl costs 0 real_cost = 394.492 beautshot_TS1 costs 0 real_cost = 391.683 Zhang-Server_TS5-scwrl costs 0 real_cost = 118.821 Zhang-Server_TS5 costs 0 real_cost = 118.801 Zhang-Server_TS4-scwrl costs 0 real_cost = 249.486 Zhang-Server_TS4 costs 0 real_cost = 252.156 Zhang-Server_TS3-scwrl costs 0 real_cost = 260.832 Zhang-Server_TS3 costs 0 real_cost = 271.033 Zhang-Server_TS2-scwrl costs 0 real_cost = 236.181 Zhang-Server_TS2 costs 0 real_cost = 229.9 Zhang-Server_TS1-scwrl costs 0 real_cost = 220.028 Zhang-Server_TS1 costs 0 real_cost = 218.379 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 207.617 UNI-EID_sfst_AL1 costs 0 real_cost = 264.243 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 173.596 UNI-EID_expm_TS1 costs 0 real_cost = 233.881 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 80.4976 UNI-EID_bnmx_TS1 costs 0 real_cost = 166.61 SPARKS2_TS5-scwrl costs 0 real_cost = 288.14 SPARKS2_TS5 costs 0 real_cost = 292.78 SPARKS2_TS4-scwrl costs 0 real_cost = 315.162 SPARKS2_TS4 costs 0 real_cost = 314.732 SPARKS2_TS3-scwrl costs 0 real_cost = 342.926 SPARKS2_TS3 costs 0 real_cost = 342.691 SPARKS2_TS2-scwrl costs 0 real_cost = 287.728 SPARKS2_TS2 costs 0 real_cost = 289.294 SPARKS2_TS1-scwrl costs 0 real_cost = 307.838 SPARKS2_TS1 costs 0 real_cost = 307.883 SP4_TS5-scwrl costs 0 real_cost = 299.682 SP4_TS5 costs 0 real_cost = 303.851 SP4_TS4-scwrl costs 0 real_cost = 283.502 SP4_TS4 costs 0 real_cost = 287.142 SP4_TS3-scwrl costs 0 real_cost = 154.334 SP4_TS3 costs 0 real_cost = 154.26 SP4_TS2-scwrl costs 0 real_cost = 282.507 SP4_TS2 costs 0 real_cost = 281.908 SP4_TS1-scwrl costs 0 real_cost = 309.556 SP4_TS1 costs 0 real_cost = 308.753 SP3_TS5-scwrl costs 0 real_cost = 328.703 SP3_TS5 costs 0 real_cost = 329.579 SP3_TS4-scwrl costs 0 real_cost = 330.068 SP3_TS4 costs 0 real_cost = 330.858 SP3_TS3-scwrl costs 0 real_cost = 303.269 SP3_TS2-scwrl costs 0 real_cost = 340.442 SP3_TS2 costs 0 real_cost = 336.896 SP3_TS1-scwrl costs 0 real_cost = 281.326 SP3_TS1 costs 0 real_cost = 282.86 SAM_T06_server_TS5-scwrl costs 0 real_cost = 413.421 SAM_T06_server_TS5 costs 0 real_cost = 405.683 SAM_T06_server_TS4-scwrl costs 0 real_cost = 381.212 SAM_T06_server_TS4 costs 0 real_cost = 395.868 SAM_T06_server_TS3-scwrl costs 0 real_cost = 406.551 SAM_T06_server_TS3 costs 0 real_cost = 406.107 SAM_T06_server_TS2-scwrl costs 0 real_cost = 129.668 SAM_T06_server_TS2 costs 0 real_cost = 121.011 SAM_T06_server_TS1-scwrl costs 0 real_cost = 49.5654 SAM_T06_server_TS1 costs 0 real_cost = 49.957 SAM-T02_AL4-scwrl costs 0 real_cost = 337.334 SAM-T02_AL4 costs 0 real_cost = 354.262 SAM-T02_AL3-scwrl costs 0 real_cost = 507.649 SAM-T02_AL3 costs 0 real_cost = 533.434 SAM-T02_AL2-scwrl costs 0 real_cost = 507.192 SAM-T02_AL2 costs 0 real_cost = 521.213 SAM-T02_AL1-scwrl costs 0 real_cost = 270.494 SAM-T02_AL1 costs 0 real_cost = 308.6 ROKKY_TS5-scwrl costs 0 real_cost = 299.745 ROKKY_TS5 costs 0 real_cost = 409.643 ROKKY_TS4-scwrl costs 0 real_cost = 310.107 ROKKY_TS4 costs 0 real_cost = 422.07 ROKKY_TS3-scwrl costs 0 real_cost = 284.361 ROKKY_TS3 costs 0 real_cost = 395.295 ROKKY_TS2-scwrl costs 0 real_cost = 286.895 ROKKY_TS2 costs 0 real_cost = 395.898 ROKKY_TS1-scwrl costs 0 real_cost = 289.244 ROKKY_TS1 costs 0 real_cost = 404.068 ROBETTA_TS5-scwrl costs 0 real_cost = 164.266 ROBETTA_TS5 costs 0 real_cost = 163.957 ROBETTA_TS4-scwrl costs 0 real_cost = 261.816 ROBETTA_TS4 costs 0 real_cost = 267.888 ROBETTA_TS3-scwrl costs 0 real_cost = 104.178 ROBETTA_TS3 costs 0 real_cost = 105.127 ROBETTA_TS2-scwrl costs 0 real_cost = 272.543 ROBETTA_TS2 costs 0 real_cost = 263.895 ROBETTA_TS1-scwrl costs 0 real_cost = 94.6213 ROBETTA_TS1 costs 0 real_cost = 95.9073 RAPTOR_TS5-scwrl costs 0 real_cost = 220.763 RAPTOR_TS5 costs 0 real_cost = 218.066 RAPTOR_TS4-scwrl costs 0 real_cost = 305.748 RAPTOR_TS4 costs 0 real_cost = 305.029 RAPTOR_TS3-scwrl costs 0 real_cost = 297.261 RAPTOR_TS3 costs 0 real_cost = 299.817 RAPTOR_TS2-scwrl costs 0 real_cost = 255.82 RAPTOR_TS2 costs 0 real_cost = 254.532 RAPTOR_TS1-scwrl costs 0 real_cost = 284.975 RAPTOR_TS1 costs 0 real_cost = 285.612 RAPTORESS_TS5-scwrl costs 0 real_cost = 238.309 RAPTORESS_TS5 costs 0 real_cost = 241.723 RAPTORESS_TS4-scwrl costs 0 real_cost = 299.091 RAPTORESS_TS4 costs 0 real_cost = 300.068 RAPTORESS_TS3-scwrl costs 0 real_cost = 305.514 RAPTORESS_TS3 costs 0 real_cost = 306.515 RAPTORESS_TS2-scwrl costs 0 real_cost = 253.336 RAPTORESS_TS2 costs 0 real_cost = 255.319 RAPTORESS_TS1-scwrl costs 0 real_cost = 272.068 RAPTORESS_TS1 costs 0 real_cost = 274.154 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = 330.735 RAPTOR-ACE_TS5 costs 0 real_cost = 331.667 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = 313.601 RAPTOR-ACE_TS4 costs 0 real_cost = 314.78 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = 289.537 RAPTOR-ACE_TS3 costs 0 real_cost = 290.366 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = 349.596 RAPTOR-ACE_TS2 costs 0 real_cost = 350.527 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = 292.672 RAPTOR-ACE_TS1 costs 0 real_cost = 293.936 Pmodeller6_TS5-scwrl costs 0 real_cost = 120.104 Pmodeller6_TS5 costs 0 real_cost = 117.683 Pmodeller6_TS4-scwrl costs 0 real_cost = 142.362 Pmodeller6_TS4 costs 0 real_cost = 142.204 Pmodeller6_TS3-scwrl costs 0 real_cost = 119.357 Pmodeller6_TS3 costs 0 real_cost = 118.684 Pmodeller6_TS2-scwrl costs 0 real_cost = 164.266 Pmodeller6_TS2 costs 0 real_cost = 163.957 Pmodeller6_TS1-scwrl costs 0 real_cost = 94.6213 Pmodeller6_TS1 costs 0 real_cost = 95.9073 Phyre-1_TS1-scwrl costs 0 real_cost = 217.372 Phyre-1_TS1 costs 0 real_cost = 210.208 Pcons6_TS5-scwrl costs 0 real_cost = 119.357 Pcons6_TS5 costs 0 real_cost = 118.684 Pcons6_TS4-scwrl costs 0 real_cost = 184.974 Pcons6_TS4 costs 0 real_cost = 185.028 Pcons6_TS3-scwrl costs 0 real_cost = 94.6213 Pcons6_TS3 costs 0 real_cost = 95.9073 Pcons6_TS2-scwrl costs 0 real_cost = 143.013 Pcons6_TS2 costs 0 real_cost = 140.849 Pcons6_TS1-scwrl costs 0 real_cost = 120.104 Pcons6_TS1 costs 0 real_cost = 117.683 PROTINFO_TS5-scwrl costs 0 real_cost = 339.782 PROTINFO_TS5 costs 0 real_cost = 339.949 PROTINFO_TS4-scwrl costs 0 real_cost = 267.286 PROTINFO_TS4 costs 0 real_cost = 268.424 PROTINFO_TS3-scwrl costs 0 real_cost = 405.287 PROTINFO_TS3 costs 0 real_cost = 400.954 PROTINFO_TS2-scwrl costs 0 real_cost = 265.706 PROTINFO_TS2 costs 0 real_cost = 265.089 PROTINFO_TS1-scwrl costs 0 real_cost = 251.61 PROTINFO_TS1 costs 0 real_cost = 252.435 PROTINFO-AB_TS5-scwrl costs 0 real_cost = 251.708 PROTINFO-AB_TS5 costs 0 real_cost = 256.869 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 257.757 PROTINFO-AB_TS4 costs 0 real_cost = 256.812 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 256.199 PROTINFO-AB_TS3 costs 0 real_cost = 255.574 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 265.706 PROTINFO-AB_TS2 costs 0 real_cost = 265.089 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 253.067 PROTINFO-AB_TS1 costs 0 real_cost = 255.395 POMYSL_TS5-scwrl costs 0 real_cost = 294.799 POMYSL_TS5 costs 0 real_cost = 301.346 POMYSL_TS4-scwrl costs 0 real_cost = 325.478 POMYSL_TS4 costs 0 real_cost = 339.948 POMYSL_TS3-scwrl costs 0 real_cost = 280.76 POMYSL_TS3 costs 0 real_cost = 300.804 POMYSL_TS2-scwrl costs 0 real_cost = 304.499 POMYSL_TS2 costs 0 real_cost = 311.237 POMYSL_TS1-scwrl costs 0 real_cost = 329.94 POMYSL_TS1 costs 0 real_cost = 347.193 NN_PUT_lab_TS1-scwrl costs 0 real_cost = 296.315 NN_PUT_lab_TS1 costs 0 real_cost = 300.255 MetaTasser_TS5-scwrl costs 0 real_cost = 251.015 MetaTasser_TS5 costs 0 real_cost = 240.76 MetaTasser_TS4-scwrl costs 0 real_cost = 256.674 MetaTasser_TS4 costs 0 real_cost = 258.952 MetaTasser_TS3-scwrl costs 0 real_cost = 292.23 MetaTasser_TS3 costs 0 real_cost = 285.296 MetaTasser_TS2-scwrl costs 0 real_cost = 243.656 MetaTasser_TS2 costs 0 real_cost = 233.532 MetaTasser_TS1-scwrl costs 0 real_cost = 250.817 MetaTasser_TS1 costs 0 real_cost = 250.803 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 316.311 Ma-OPUS-server_TS5 costs 0 real_cost = 316.175 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 347.447 Ma-OPUS-server_TS4 costs 0 real_cost = 347.514 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = 124.62 Ma-OPUS-server_TS3 costs 0 real_cost = 125.334 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 323.186 Ma-OPUS-server_TS2 costs 0 real_cost = 323.371 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 272.86 Ma-OPUS-server_TS1 costs 0 real_cost = 272.452 LOOPP_TS5-scwrl costs 0 real_cost = 333.312 LOOPP_TS5 costs 0 real_cost = 332.383 LOOPP_TS4-scwrl costs 0 real_cost = 330.359 LOOPP_TS4 costs 0 real_cost = 332.142 LOOPP_TS3-scwrl costs 0 real_cost = 295.121 LOOPP_TS3 costs 0 real_cost = 292.653 LOOPP_TS2-scwrl costs 0 real_cost = 339.113 LOOPP_TS2 costs 0 real_cost = 343.083 LOOPP_TS1-scwrl costs 0 real_cost = 296.315 LOOPP_TS1 costs 0 real_cost = 300.255 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 905.466 Huber-Torda-Server_TS5 costs 0 real_cost = 908.466 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 434.217 Huber-Torda-Server_TS4 costs 0 real_cost = 460.283 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 425.696 Huber-Torda-Server_TS3 costs 0 real_cost = 457.203 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 398.576 Huber-Torda-Server_TS2 costs 0 real_cost = 449.981 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = 366.631 Huber-Torda-Server_TS1 costs 0 real_cost = 414.943 HHpred3_TS1-scwrl costs 0 real_cost = 350.371 HHpred3_TS1 costs 0 real_cost = 345.046 HHpred2_TS1-scwrl costs 0 real_cost = 135.498 HHpred2_TS1 costs 0 real_cost = 134.401 HHpred1_TS1-scwrl costs 0 real_cost = 359.314 HHpred1_TS1 costs 0 real_cost = 357.355 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = 313.916 GeneSilicoMetaServer_TS5 costs 0 real_cost = 314.115 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = 284.071 GeneSilicoMetaServer_TS4 costs 0 real_cost = 285.653 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = 290.248 GeneSilicoMetaServer_TS3 costs 0 real_cost = 291.033 FUNCTION_TS5-scwrl costs 0 real_cost = 293.593 FUNCTION_TS5 costs 0 real_cost = 293.252 FUNCTION_TS4-scwrl costs 0 real_cost = 300.794 FUNCTION_TS4 costs 0 real_cost = 303.79 FUNCTION_TS3-scwrl costs 0 real_cost = 301.02 FUNCTION_TS3 costs 0 real_cost = 302.815 FUNCTION_TS2-scwrl costs 0 real_cost = 302.893 FUNCTION_TS2 costs 0 real_cost = 302.337 FUNCTION_TS1-scwrl costs 0 real_cost = 302.453 FUNCTION_TS1 costs 0 real_cost = 301.162 FUGUE_AL5-scwrl costs 0 real_cost = 385.247 FUGUE_AL5 costs 0 real_cost = 464.881 FUGUE_AL4-scwrl costs 0 real_cost = 436.916 FUGUE_AL4 costs 0 real_cost = 436.916 FUGUE_AL3-scwrl costs 0 real_cost = 439.528 FUGUE_AL3 costs 0 real_cost = 504.654 FUGUE_AL2-scwrl costs 0 real_cost = 442.571 FUGUE_AL2 costs 0 real_cost = 522.23 FUGUE_AL1-scwrl costs 0 real_cost = 382.637 FUGUE_AL1 costs 0 real_cost = 484.098 FUGMOD_TS5-scwrl costs 0 real_cost = 327.078 FUGMOD_TS5 costs 0 real_cost = 326.619 FUGMOD_TS4-scwrl costs 0 real_cost = 313.192 FUGMOD_TS4 costs 0 real_cost = 313.433 FUGMOD_TS3-scwrl costs 0 real_cost = 437.464 FUGMOD_TS3 costs 0 real_cost = 435.544 FUGMOD_TS2-scwrl costs 0 real_cost = 372.232 FUGMOD_TS2 costs 0 real_cost = 370.107 FUGMOD_TS1-scwrl costs 0 real_cost = 368.314 FUGMOD_TS1 costs 0 real_cost = 367.745 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 336.425 FPSOLVER-SERVER_TS5 costs 0 real_cost = 336.625 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 324.326 FPSOLVER-SERVER_TS4 costs 0 real_cost = 324.954 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 342.709 FPSOLVER-SERVER_TS3 costs 0 real_cost = 342.876 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 332.845 FPSOLVER-SERVER_TS2 costs 0 real_cost = 334.846 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 343.83 FPSOLVER-SERVER_TS1 costs 0 real_cost = 344.55 FORTE2_AL5-scwrl costs 0 real_cost = 368.998 FORTE2_AL5 costs 0 real_cost = 456.769 FORTE2_AL4-scwrl costs 0 real_cost = 315.974 FORTE2_AL4 costs 0 real_cost = 416.982 FORTE2_AL3-scwrl costs 0 real_cost = 330.906 FORTE2_AL3 costs 0 real_cost = 424.029 FORTE2_AL2-scwrl costs 0 real_cost = 321.291 FORTE2_AL2 costs 0 real_cost = 409.475 FORTE2_AL1-scwrl costs 0 real_cost = 192.946 FORTE2_AL1 costs 0 real_cost = 302.867 FORTE1_AL5-scwrl costs 0 real_cost = 384.881 FORTE1_AL5 costs 0 real_cost = 497.36 FORTE1_AL4-scwrl costs 0 real_cost = 446.905 FORTE1_AL4 costs 0 real_cost = 446.905 FORTE1_AL3-scwrl costs 0 real_cost = 368.998 FORTE1_AL3 costs 0 real_cost = 456.769 FORTE1_AL2-scwrl costs 0 real_cost = 192.946 FORTE1_AL2 costs 0 real_cost = 302.867 FORTE1_AL1-scwrl costs 0 real_cost = 317.036 FORTE1_AL1 costs 0 real_cost = 418.366 FOLDpro_TS5-scwrl costs 0 real_cost = 271.318 FOLDpro_TS5 costs 0 real_cost = 273.159 FOLDpro_TS4-scwrl costs 0 real_cost = 347.979 FOLDpro_TS4 costs 0 real_cost = 348.125 FOLDpro_TS3-scwrl costs 0 real_cost = 302.398 FOLDpro_TS3 costs 0 real_cost = 302.982 FOLDpro_TS2-scwrl costs 0 real_cost = 348.187 FOLDpro_TS2 costs 0 real_cost = 348.656 FOLDpro_TS1-scwrl costs 0 real_cost = 242.922 FOLDpro_TS1 costs 0 real_cost = 241.252 FAMS_TS5-scwrl costs 0 real_cost = 155.322 FAMS_TS5 costs 0 real_cost = 158.866 FAMS_TS4-scwrl costs 0 real_cost = 302.453 FAMS_TS4 costs 0 real_cost = 301.162 FAMS_TS3-scwrl costs 0 real_cost = 193.79 FAMS_TS3 costs 0 real_cost = 191.195 FAMS_TS2-scwrl costs 0 real_cost = 375.721 FAMS_TS2 costs 0 real_cost = 375.582 FAMS_TS1-scwrl costs 0 real_cost = 193.79 FAMS_TS1 costs 0 real_cost = 191.195 FAMSD_TS5-scwrl costs 0 real_cost = 407.648 FAMSD_TS5 costs 0 real_cost = 405.824 FAMSD_TS4-scwrl costs 0 real_cost = 430.704 FAMSD_TS4 costs 0 real_cost = 428.619 FAMSD_TS3-scwrl costs 0 real_cost = 488.143 FAMSD_TS3 costs 0 real_cost = 485.776 FAMSD_TS2-scwrl costs 0 real_cost = 193.79 FAMSD_TS2 costs 0 real_cost = 191.195 FAMSD_TS1-scwrl costs 0 real_cost = 141.265 FAMSD_TS1 costs 0 real_cost = 144.246 Distill_TS5-scwrl costs 0 real_cost = 433.565 Distill_TS4-scwrl costs 0 real_cost = 430.963 Distill_TS3-scwrl costs 0 real_cost = 428.141 Distill_TS2-scwrl costs 0 real_cost = 431.935 Distill_TS1-scwrl costs 0 real_cost = 426.196 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 307.386 CaspIta-FOX_TS5 costs 0 real_cost = 306.22 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 388.5 CaspIta-FOX_TS4 costs 0 real_cost = 387.925 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 415.285 CaspIta-FOX_TS3 costs 0 real_cost = 413.604 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 373.211 CaspIta-FOX_TS2 costs 0 real_cost = 371.179 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 148.748 CaspIta-FOX_TS1 costs 0 real_cost = 151.491 CIRCLE_TS5-scwrl costs 0 real_cost = 267.113 CIRCLE_TS5 costs 0 real_cost = 263.218 CIRCLE_TS4-scwrl costs 0 real_cost = 193.79 CIRCLE_TS4 costs 0 real_cost = 191.195 CIRCLE_TS3-scwrl costs 0 real_cost = 155.322 CIRCLE_TS3 costs 0 real_cost = 158.866 CIRCLE_TS2-scwrl costs 0 real_cost = 193.238 CIRCLE_TS2 costs 0 real_cost = 198.745 CIRCLE_TS1-scwrl costs 0 real_cost = 267.907 CIRCLE_TS1 costs 0 real_cost = 262.319 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = 291.306 Bilab-ENABLE_TS5 costs 0 real_cost = 291.545 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = 270.487 Bilab-ENABLE_TS4 costs 0 real_cost = 270.487 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = 295.907 Bilab-ENABLE_TS3 costs 0 real_cost = 295.907 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = 296.251 Bilab-ENABLE_TS2 costs 0 real_cost = 296.217 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = 286.109 Bilab-ENABLE_TS1 costs 0 real_cost = 286.112 BayesHH_TS1-scwrl costs 0 real_cost = 389.096 BayesHH_TS1 costs 0 real_cost = 388.835 ABIpro_TS5-scwrl costs 0 real_cost = 296.369 ABIpro_TS5 costs 0 real_cost = 296.338 ABIpro_TS4-scwrl costs 0 real_cost = 251.378 ABIpro_TS4 costs 0 real_cost = 251.39 ABIpro_TS3-scwrl costs 0 real_cost = 271.161 ABIpro_TS3 costs 0 real_cost = 271.135 ABIpro_TS2-scwrl costs 0 real_cost = 322.521 ABIpro_TS2 costs 0 real_cost = 322.521 ABIpro_TS1-scwrl costs 0 real_cost = 275.855 ABIpro_TS1 costs 0 real_cost = 275.855 3Dpro_TS5-scwrl costs 0 real_cost = 276.968 3Dpro_TS5 costs 0 real_cost = 275.044 3Dpro_TS4-scwrl costs 0 real_cost = 322.521 3Dpro_TS4 costs 0 real_cost = 322.521 3Dpro_TS3-scwrl costs 0 real_cost = 275.855 3Dpro_TS3 costs 0 real_cost = 275.855 3Dpro_TS2-scwrl costs 0 real_cost = 302.203 3Dpro_TS2 costs 0 real_cost = 304.09 3Dpro_TS1-scwrl costs 0 real_cost = 302.398 3Dpro_TS1 costs 0 real_cost = 302.982 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 375.252 3D-JIGSAW_TS5 costs 0 real_cost = 371.512 3D-JIGSAW_TS4-scwrl costs 0 real_cost = 347.699 3D-JIGSAW_TS4 costs 0 real_cost = 348.636 3D-JIGSAW_TS3-scwrl costs 0 real_cost = 295.7 3D-JIGSAW_TS3 costs 0 real_cost = 309.436 3D-JIGSAW_TS2-scwrl costs 0 real_cost = 349.361 3D-JIGSAW_TS2 costs 0 real_cost = 347.673 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 397.295 3D-JIGSAW_TS1 costs 0 real_cost = 387.518 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = 358.427 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = 359.223 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = 362.459 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = 361.938 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = 353.308 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = 354.117 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = 401.029 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = 396.219 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = 435.641 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = 424.045 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 362.837 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 359.986 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = 363.075 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = 361.284 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = 363.089 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = 361.845 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 365.054 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 362.723 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 326.609 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = 324.866 scrambled-loop.pdb.gz costs 0 real_cost = 115.812 chimera-try9-try4.pdb.gz costs 0 real_cost = 112.981 T0312.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 89.3758 T0312.try9-opt2.pdb.gz costs 0 real_cost = 91.948 T0312.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = 94.0114 T0312.try9-opt1.pdb.gz costs 0 real_cost = 90.3481 T0312.try9-opt1-scwrl.pdb.gz costs 0 real_cost = 87.7516 T0312.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 124.28 T0312.try8-opt2.pdb.gz costs 0 real_cost = 124.103 T0312.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = 121.309 T0312.try8-opt1.pdb.gz costs 0 real_cost = 126.078 T0312.try8-opt1-scwrl.pdb.gz costs 0 real_cost = 126.547 T0312.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 80.6517 T0312.try7-opt2.pdb.gz costs 0 real_cost = 86.3873 T0312.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = 86.5577 T0312.try7-opt1.pdb.gz costs 0 real_cost = 89.8917 T0312.try7-opt1-scwrl.pdb.gz costs 0 real_cost = 85.8349 T0312.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 94.7029 T0312.try6-opt2.pdb.gz costs 0 real_cost = 95.7543 T0312.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = 95.9811 T0312.try6-opt1.pdb.gz costs 0 real_cost = 91.3849 T0312.try6-opt1-scwrl.pdb.gz costs 0 real_cost = 90.1922 T0312.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 48.9878 T0312.try5-opt2.pdb.gz costs 0 real_cost = 52.5417 T0312.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = 56.509 T0312.try5-opt1.pdb.gz costs 0 real_cost = 55.3257 T0312.try5-opt1-scwrl.pdb.gz costs 0 real_cost = 51.4505 T0312.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 125.427 T0312.try4-opt2.pdb.gz costs 0 real_cost = 131.1 T0312.try4-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 124.922 T0312.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = 128.028 T0312.try4-opt1.pdb.gz costs 0 real_cost = 131.466 T0312.try4-opt1-scwrl.pdb.gz costs 0 real_cost = 131.567 T0312.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 126.733 T0312.try3-opt2.pdb.gz costs 0 real_cost = 130.458 T0312.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 128.549 T0312.try3-opt1.pdb.gz costs 0 real_cost = 131.458 T0312.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 131.787 T0312.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 117.171 T0312.try2-opt2.pdb.gz costs 0 real_cost = 117.977 T0312.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = 114.679 T0312.try2-opt1.pdb.gz costs 0 real_cost = 117.524 T0312.try2-opt1-scwrl.pdb.gz costs 0 real_cost = 117.32 T0312.try18-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 119.185 T0312.try18-opt2.pdb.gz costs 0 real_cost = 119.623 T0312.try18-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 118.893 T0312.try18-opt2.gromacs0.pdb.gz costs 0 real_cost = 119.663 T0312.try18-opt1.pdb.gz costs 0 real_cost = 119.562 T0312.try18-opt1-scwrl.pdb.gz costs 0 real_cost = 119.279 T0312.try17-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 119.029 T0312.try17-opt2.pdb.gz costs 0 real_cost = 120.757 T0312.try17-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 120.458 T0312.try17-opt2.gromacs0.pdb.gz costs 0 real_cost = 122.074 T0312.try17-opt1.pdb.gz costs 0 real_cost = 119.797 T0312.try17-opt1-scwrl.pdb.gz costs 0 real_cost = 119.752 T0312.try16-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 119.596 T0312.try16-opt2.pdb.gz costs 0 real_cost = 121.49 T0312.try16-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 119.927 T0312.try16-opt2.gromacs0.pdb.gz costs 0 real_cost = 122.649 T0312.try16-opt1.pdb.gz costs 0 real_cost = 118.119 T0312.try16-opt1-scwrl.pdb.gz costs 0 real_cost = 117.802 T0312.try15-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 114.268 T0312.try15-opt2.pdb.gz costs 0 real_cost = 116.195 T0312.try15-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 114.372 T0312.try15-opt2.gromacs0.pdb.gz costs 0 real_cost = 116.787 T0312.try15-opt1.pdb.gz costs 0 real_cost = 116.469 T0312.try15-opt1-scwrl.pdb.gz costs 0 real_cost = 115.689 T0312.try14-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 149.98 T0312.try14-opt2.pdb.gz costs 0 real_cost = 150.215 T0312.try14-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 144.459 T0312.try14-opt2.gromacs0.pdb.gz costs 0 real_cost = 145.807 T0312.try14-opt1.pdb.gz costs 0 real_cost = 152.502 T0312.try14-opt1-scwrl.pdb.gz costs 0 real_cost = 153.968 T0312.try13-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 114.054 T0312.try13-opt2.pdb.gz costs 0 real_cost = 116.273 T0312.try13-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 113.754 T0312.try13-opt2.gromacs0.pdb.gz costs 0 real_cost = 116.196 T0312.try13-opt1.pdb.gz costs 0 real_cost = 117.134 T0312.try13-opt1-scwrl.pdb.gz costs 0 real_cost = 115.379 T0312.try12-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 46.5705 T0312.try12-opt2.pdb.gz costs 0 real_cost = 45.242 T0312.try12-opt2.gromacs0.pdb.gz costs 0 real_cost = 51.3648 T0312.try12-opt1.pdb.gz costs 0 real_cost = 49.6229 T0312.try12-opt1-scwrl.pdb.gz costs 0 real_cost = 49.6371 T0312.try11-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 114.958 T0312.try11-opt2.pdb.gz costs 0 real_cost = 117.568 T0312.try11-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 115.54 T0312.try11-opt2.gromacs0.pdb.gz costs 0 real_cost = 117.899 T0312.try11-opt1.pdb.gz costs 0 real_cost = 118.2 T0312.try11-opt1-scwrl.pdb.gz costs 0 real_cost = 116.588 T0312.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 113.97 T0312.try10-opt2.pdb.gz costs 0 real_cost = 116.777 T0312.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 117.488 T0312.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = 119.685 T0312.try10-opt1.pdb.gz costs 0 real_cost = 115.395 T0312.try10-opt1-scwrl.pdb.gz costs 0 real_cost = 113.374 T0312.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 145.217 T0312.try1-opt2.pdb.gz costs 0 real_cost = 146.121 T0312.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 141.871 T0312.try1-opt1.pdb.gz costs 0 real_cost = 144.174 T0312.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 142.807 ../model5.ts-submitted costs 0 real_cost = 131.11 ../model4.ts-submitted costs 0 real_cost = 124.069 ../model3.ts-submitted costs 0 real_cost = 92.107 ../model2.ts-submitted costs 0 real_cost = 116.065 ../model1.ts-submitted costs 0 real_cost = 118.894 align5 costs 0 real_cost = 394.266 align4 costs 0 real_cost = 373.066 align3 costs 0 real_cost = 410.519 align2 costs 0 real_cost = 391.579 align1 costs 0 real_cost = 158.111 T0312.try1-opt2.pdb costs 0 real_cost = 146.121 model5-scwrl costs 0 real_cost = 129.867 model5.ts-submitted costs 0 real_cost = 131.11 model4-scwrl costs 0 real_cost = 122.707 model4.ts-submitted costs 0 real_cost = 124.069 model3-scwrl costs 0 real_cost = 90.2911 model3.ts-submitted costs 0 real_cost = 92.107 model2-scwrl costs 0 real_cost = 114.012 model2.ts-submitted costs 0 real_cost = 116.065 model1-scwrl costs 0 real_cost = 118.909 model1.ts-submitted costs 0 real_cost = 118.893 2h6lA costs 0 real_cost = -883 # command:CPU_time= 403.784 sec, elapsed time= 735.714 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty rm -f decoys/evaluate_1.rdb sed -e s/XXX0000/T0312/ -e s/START_COL/1/ \ -e s/REAL_PDB/2h6lA/ \ -e s/_domain/_1/ \ -e s/read-pdb/read-pdb+servers/ \ -e 's/ReadConformPDBids/# ReadConformPDBids/' \ -e 's/# ReadConformPDB /ReadConformPDB /' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175233234 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.85011 sec, elapsed time= 5.9201 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.9271 sec, elapsed time= 6.06101 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0312 numbered 1 through 146 Created new target T0312 from T0312.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:# ReadConformPDB reading from PDB file T0312_1.real.pdb looking for model 1 Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.12576 sec, elapsed time= 8.28112 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 142 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -44.3182 # GDT_score(maxd=8,maxw=2.9)= -45.1064 # GDT_score(maxd=8,maxw=3.2)= -43.2603 # GDT_score(maxd=8,maxw=3.5)= -41.3428 # GDT_score(maxd=10,maxw=3.8)= -43.9787 # GDT_score(maxd=10,maxw=4)= -42.6725 # GDT_score(maxd=10,maxw=4.2)= -41.3565 # GDT_score(maxd=12,maxw=4.3)= -45.0258 # GDT_score(maxd=12,maxw=4.5)= -43.6588 # GDT_score(maxd=12,maxw=4.7)= -42.2992 # GDT_score(maxd=14,maxw=5.2)= -42.5919 # GDT_score(maxd=14,maxw=5.5)= -40.7449 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.5710000e+03 rmsd (weighted)= 1.0005643e+01 (unweighted)= 2.9853185e+01 superimposing iter= 1 total_weight= 2.4736834e+03 rmsd (weighted)= 6.0845193e+00 (unweighted)= 2.9959739e+01 superimposing iter= 2 total_weight= 1.4726128e+03 rmsd (weighted)= 4.8853798e+00 (unweighted)= 3.0168170e+01 superimposing iter= 3 total_weight= 1.4991832e+03 rmsd (weighted)= 3.8724325e+00 (unweighted)= 3.0381746e+01 superimposing iter= 4 total_weight= 1.7343736e+03 rmsd (weighted)= 2.8689244e+00 (unweighted)= 3.0553508e+01 superimposing iter= 5 total_weight= 1.6747396e+03 rmsd (weighted)= 2.1878007e+00 (unweighted)= 3.0671138e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_519110176.pdb -s /var/tmp/to_scwrl_519110176.seq -o /var/tmp/from_scwrl_519110176.pdb > /var/tmp/scwrl_519110176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_519110176.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -45.2652 # GDT_score(maxd=8,maxw=2.9)= -45.3688 # GDT_score(maxd=8,maxw=3.2)= -43.4864 # GDT_score(maxd=8,maxw=3.5)= -41.5743 # GDT_score(maxd=10,maxw=3.8)= -44.4334 # GDT_score(maxd=10,maxw=4)= -43.0836 # GDT_score(maxd=10,maxw=4.2)= -41.7572 # GDT_score(maxd=12,maxw=4.3)= -45.4923 # GDT_score(maxd=12,maxw=4.5)= -44.1223 # GDT_score(maxd=12,maxw=4.7)= -42.7768 # GDT_score(maxd=14,maxw=5.2)= -43.1099 # GDT_score(maxd=14,maxw=5.5)= -41.1956 # command:# request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1708476072.pdb -s /var/tmp/to_scwrl_1708476072.seq -o /var/tmp/from_scwrl_1708476072.pdb > /var/tmp/scwrl_1708476072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1708476072.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -47.5379 # GDT_score(maxd=8,maxw=2.9)= -47.3601 # GDT_score(maxd=8,maxw=3.2)= -45.3854 # GDT_score(maxd=8,maxw=3.5)= -43.3455 # GDT_score(maxd=10,maxw=3.8)= -46.8556 # GDT_score(maxd=10,maxw=4)= -45.3958 # GDT_score(maxd=10,maxw=4.2)= -43.9884 # GDT_score(maxd=12,maxw=4.3)= -47.971 # GDT_score(maxd=12,maxw=4.5)= -46.5243 # GDT_score(maxd=12,maxw=4.7)= -45.1254 # GDT_score(maxd=14,maxw=5.2)= -45.4777 # GDT_score(maxd=14,maxw=5.5)= -43.4219 # command:# request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_875332624.pdb -s /var/tmp/to_scwrl_875332624.seq -o /var/tmp/from_scwrl_875332624.pdb > /var/tmp/scwrl_875332624.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_875332624.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -44.697 # GDT_score(maxd=8,maxw=2.9)= -44.3502 # GDT_score(maxd=8,maxw=3.2)= -42.38 # GDT_score(maxd=8,maxw=3.5)= -40.4654 # GDT_score(maxd=10,maxw=3.8)= -43.5857 # GDT_score(maxd=10,maxw=4)= -42.1998 # GDT_score(maxd=10,maxw=4.2)= -40.8382 # GDT_score(maxd=12,maxw=4.3)= -44.6486 # GDT_score(maxd=12,maxw=4.5)= -43.2504 # GDT_score(maxd=12,maxw=4.7)= -41.9006 # GDT_score(maxd=14,maxw=5.2)= -42.3489 # GDT_score(maxd=14,maxw=5.5)= -40.5611 # command:# request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_355249053.pdb -s /var/tmp/to_scwrl_355249053.seq -o /var/tmp/from_scwrl_355249053.pdb > /var/tmp/scwrl_355249053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_355249053.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -48.1061 # GDT_score(maxd=8,maxw=2.9)= -47.2497 # GDT_score(maxd=8,maxw=3.2)= -45.0725 # GDT_score(maxd=8,maxw=3.5)= -42.8054 # GDT_score(maxd=10,maxw=3.8)= -46.343 # GDT_score(maxd=10,maxw=4)= -44.7952 # GDT_score(maxd=10,maxw=4.2)= -43.3049 # GDT_score(maxd=12,maxw=4.3)= -47.0794 # GDT_score(maxd=12,maxw=4.5)= -45.5775 # GDT_score(maxd=12,maxw=4.7)= -44.1494 # GDT_score(maxd=14,maxw=5.2)= -44.3576 # GDT_score(maxd=14,maxw=5.5)= -42.4848 # command:# request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_675593330.pdb -s /var/tmp/to_scwrl_675593330.seq -o /var/tmp/from_scwrl_675593330.pdb > /var/tmp/scwrl_675593330.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_675593330.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0312.try1-opt2.pdb looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -46.2121 # GDT_score(maxd=8,maxw=2.9)= -44.7393 # GDT_score(maxd=8,maxw=3.2)= -42.7467 # GDT_score(maxd=8,maxw=3.5)= -40.6569 # GDT_score(maxd=10,maxw=3.8)= -44.2876 # GDT_score(maxd=10,maxw=4)= -42.8469 # GDT_score(maxd=10,maxw=4.2)= -41.4858 # GDT_score(maxd=12,maxw=4.3)= -45.258 # GDT_score(maxd=12,maxw=4.5)= -43.8696 # GDT_score(maxd=12,maxw=4.7)= -42.5197 # GDT_score(maxd=14,maxw=5.2)= -42.8357 # GDT_score(maxd=14,maxw=5.5)= -40.9634 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.5710000e+03 rmsd (weighted)= 9.6089584e+00 (unweighted)= 2.8249554e+01 superimposing iter= 1 total_weight= 3.3079044e+03 rmsd (weighted)= 4.9855765e+00 (unweighted)= 2.8141924e+01 superimposing iter= 2 total_weight= 1.5881424e+03 rmsd (weighted)= 3.8749056e+00 (unweighted)= 2.8097367e+01 superimposing iter= 3 total_weight= 1.4391424e+03 rmsd (weighted)= 3.1819522e+00 (unweighted)= 2.8097721e+01 superimposing iter= 4 total_weight= 1.4990328e+03 rmsd (weighted)= 2.5743042e+00 (unweighted)= 2.8104563e+01 superimposing iter= 5 total_weight= 1.4815376e+03 rmsd (weighted)= 2.1063655e+00 (unweighted)= 2.8111702e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0312.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0312)G34.C and (T0312)I35.C only 0.0000000e+00 apart, marking (T0312)I35.C as missing WARNING: atoms too close: (T0312)I35.N and (T0312)H36.N only 0.0000000e+00 apart, marking (T0312)I35.N as missing WARNING: atoms too close: (T0312)I35.CA and (T0312)H36.CA only 0.0000000e+00 apart, marking (T0312)I35.CA as missing WARNING: atoms too close: (T0312)S121.C and (T0312)E123.C only 0.0000000e+00 apart, marking (T0312)E123.C as missing WARNING: atoms too close: (T0312)G122.N and (T0312)A124.N only 0.0000000e+00 apart, marking (T0312)G122.N as missing WARNING: atoms too close: (T0312)G122.CA and (T0312)A124.CA only 0.0000000e+00 apart, marking (T0312)G122.CA as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.893939 # GDT_score = -46.9697 # GDT_score(maxd=8,maxw=2.9)= -45.7092 # GDT_score(maxd=8,maxw=3.2)= -43.6772 # GDT_score(maxd=8,maxw=3.5)= -41.5162 # GDT_score(maxd=10,maxw=3.8)= -45.1163 # GDT_score(maxd=10,maxw=4)= -43.6276 # GDT_score(maxd=10,maxw=4.2)= -42.2173 # GDT_score(maxd=12,maxw=4.3)= -46.0857 # GDT_score(maxd=12,maxw=4.5)= -44.6477 # GDT_score(maxd=12,maxw=4.7)= -43.2847 # GDT_score(maxd=14,maxw=5.2)= -43.5509 # GDT_score(maxd=14,maxw=5.5)= -41.6956 # command:# ReadConformPDB reading from PDB file T0312.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0312)H36.C and (T0312)A45.C only 0.0000000e+00 apart, marking (T0312)A45.C as missing WARNING: atoms too close: (T0312)A37.N and (T0312)V46.N only 0.0000000e+00 apart, marking (T0312)A37.N as missing WARNING: atoms too close: (T0312)A37.CA and (T0312)V46.CA only 0.0000000e+00 apart, marking (T0312)A37.CA as missing WARNING: atoms too close: (T0312)D55.C and (T0312)K63.C only 0.0000000e+00 apart, marking (T0312)K63.C as missing WARNING: atoms too close: (T0312)Q56.N and (T0312)K64.N only 0.0000000e+00 apart, marking (T0312)Q56.N as missing WARNING: atoms too close: (T0312)Q56.CA and (T0312)K64.CA only 0.0000000e+00 apart, marking (T0312)Q56.CA as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.348485 # GDT_score = -17.0455 # GDT_score(maxd=8,maxw=2.9)= -18.0788 # GDT_score(maxd=8,maxw=3.2)= -17.1892 # GDT_score(maxd=8,maxw=3.5)= -16.3561 # GDT_score(maxd=10,maxw=3.8)= -17.0196 # GDT_score(maxd=10,maxw=4)= -16.5095 # GDT_score(maxd=10,maxw=4.2)= -16.048 # GDT_score(maxd=12,maxw=4.3)= -17.0781 # GDT_score(maxd=12,maxw=4.5)= -16.6221 # GDT_score(maxd=12,maxw=4.7)= -16.2049 # GDT_score(maxd=14,maxw=5.2)= -16.2894 # GDT_score(maxd=14,maxw=5.5)= -15.6547 # command:# ReadConformPDB reading from PDB file T0312.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0312.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0312.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0312)V62.C and (T0312)K64.C only 0.0000000e+00 apart, marking (T0312)K64.C as missing WARNING: atoms too close: (T0312)K63.N and (T0312)E65.N only 0.0000000e+00 apart, marking (T0312)K63.N as missing WARNING: atoms too close: (T0312)K63.CA and (T0312)E65.CA only 0.0000000e+00 apart, marking (T0312)K63.CA as missing WARNING: atoms too close: (T0312)H104.C and (T0312)F106.C only 0.0000000e+00 apart, marking (T0312)F106.C as missing WARNING: atoms too close: (T0312)L105.N and (T0312)S107.N only 0.0000000e+00 apart, marking (T0312)L105.N as missing WARNING: atoms too close: (T0312)L105.CA and (T0312)S107.CA only 0.0000000e+00 apart, marking (T0312)L105.CA as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try18-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0312.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try9-try4.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file scrambled-loop.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_169075330.pdb -s /var/tmp/to_scwrl_169075330.seq -o /var/tmp/from_scwrl_169075330.pdb > /var/tmp/scwrl_169075330.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_169075330.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_535341723.pdb -s /var/tmp/to_scwrl_535341723.seq -o /var/tmp/from_scwrl_535341723.pdb > /var/tmp/scwrl_535341723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_535341723.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1713803748.pdb -s /var/tmp/to_scwrl_1713803748.seq -o /var/tmp/from_scwrl_1713803748.pdb > /var/tmp/scwrl_1713803748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1713803748.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1871393075.pdb -s /var/tmp/to_scwrl_1871393075.seq -o /var/tmp/from_scwrl_1871393075.pdb > /var/tmp/scwrl_1871393075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1871393075.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_769788136.pdb -s /var/tmp/to_scwrl_769788136.seq -o /var/tmp/from_scwrl_769788136.pdb > /var/tmp/scwrl_769788136.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_769788136.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_685151894.pdb -s /var/tmp/to_scwrl_685151894.seq -o /var/tmp/from_scwrl_685151894.pdb > /var/tmp/scwrl_685151894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_685151894.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1296829064.pdb -s /var/tmp/to_scwrl_1296829064.seq -o /var/tmp/from_scwrl_1296829064.pdb > /var/tmp/scwrl_1296829064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1296829064.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_666687491.pdb -s /var/tmp/to_scwrl_666687491.seq -o /var/tmp/from_scwrl_666687491.pdb > /var/tmp/scwrl_666687491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_666687491.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2007220024.pdb -s /var/tmp/to_scwrl_2007220024.seq -o /var/tmp/from_scwrl_2007220024.pdb > /var/tmp/scwrl_2007220024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2007220024.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1632618799.pdb -s /var/tmp/to_scwrl_1632618799.seq -o /var/tmp/from_scwrl_1632618799.pdb > /var/tmp/scwrl_1632618799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1632618799.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_349479579.pdb -s /var/tmp/to_scwrl_349479579.seq -o /var/tmp/from_scwrl_349479579.pdb > /var/tmp/scwrl_349479579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_349479579.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1093582324.pdb -s /var/tmp/to_scwrl_1093582324.seq -o /var/tmp/from_scwrl_1093582324.pdb > /var/tmp/scwrl_1093582324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1093582324.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_943742794.pdb -s /var/tmp/to_scwrl_943742794.seq -o /var/tmp/from_scwrl_943742794.pdb > /var/tmp/scwrl_943742794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_943742794.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_857999416.pdb -s /var/tmp/to_scwrl_857999416.seq -o /var/tmp/from_scwrl_857999416.pdb > /var/tmp/scwrl_857999416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_857999416.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2089340921.pdb -s /var/tmp/to_scwrl_2089340921.seq -o /var/tmp/from_scwrl_2089340921.pdb > /var/tmp/scwrl_2089340921.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2089340921.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1192333131.pdb -s /var/tmp/to_scwrl_1192333131.seq -o /var/tmp/from_scwrl_1192333131.pdb > /var/tmp/scwrl_1192333131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1192333131.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_83866363.pdb -s /var/tmp/to_scwrl_83866363.seq -o /var/tmp/from_scwrl_83866363.pdb > /var/tmp/scwrl_83866363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_83866363.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_285683062.pdb -s /var/tmp/to_scwrl_285683062.seq -o /var/tmp/from_scwrl_285683062.pdb > /var/tmp/scwrl_285683062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_285683062.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_69731562.pdb -s /var/tmp/to_scwrl_69731562.seq -o /var/tmp/from_scwrl_69731562.pdb > /var/tmp/scwrl_69731562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_69731562.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_230175172.pdb -s /var/tmp/to_scwrl_230175172.seq -o /var/tmp/from_scwrl_230175172.pdb > /var/tmp/scwrl_230175172.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_230175172.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1271357542.pdb -s /var/tmp/to_scwrl_1271357542.seq -o /var/tmp/from_scwrl_1271357542.pdb > /var/tmp/scwrl_1271357542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1271357542.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_71033975.pdb -s /var/tmp/to_scwrl_71033975.seq -o /var/tmp/from_scwrl_71033975.pdb > /var/tmp/scwrl_71033975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_71033975.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1004397905.pdb -s /var/tmp/to_scwrl_1004397905.seq -o /var/tmp/from_scwrl_1004397905.pdb > /var/tmp/scwrl_1004397905.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1004397905.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1202370440.pdb -s /var/tmp/to_scwrl_1202370440.seq -o /var/tmp/from_scwrl_1202370440.pdb > /var/tmp/scwrl_1202370440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1202370440.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_86420681.pdb -s /var/tmp/to_scwrl_86420681.seq -o /var/tmp/from_scwrl_86420681.pdb > /var/tmp/scwrl_86420681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_86420681.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1644063007.pdb -s /var/tmp/to_scwrl_1644063007.seq -o /var/tmp/from_scwrl_1644063007.pdb > /var/tmp/scwrl_1644063007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1644063007.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1721480617.pdb -s /var/tmp/to_scwrl_1721480617.seq -o /var/tmp/from_scwrl_1721480617.pdb > /var/tmp/scwrl_1721480617.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1721480617.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1794896753.pdb -s /var/tmp/to_scwrl_1794896753.seq -o /var/tmp/from_scwrl_1794896753.pdb > /var/tmp/scwrl_1794896753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1794896753.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_371911984.pdb -s /var/tmp/to_scwrl_371911984.seq -o /var/tmp/from_scwrl_371911984.pdb > /var/tmp/scwrl_371911984.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_371911984.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2076729670.pdb -s /var/tmp/to_scwrl_2076729670.seq -o /var/tmp/from_scwrl_2076729670.pdb > /var/tmp/scwrl_2076729670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2076729670.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_323006437.pdb -s /var/tmp/to_scwrl_323006437.seq -o /var/tmp/from_scwrl_323006437.pdb > /var/tmp/scwrl_323006437.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_323006437.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_540987314.pdb -s /var/tmp/to_scwrl_540987314.seq -o /var/tmp/from_scwrl_540987314.pdb > /var/tmp/scwrl_540987314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_540987314.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_464587746.pdb -s /var/tmp/to_scwrl_464587746.seq -o /var/tmp/from_scwrl_464587746.pdb > /var/tmp/scwrl_464587746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_464587746.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2036810185.pdb -s /var/tmp/to_scwrl_2036810185.seq -o /var/tmp/from_scwrl_2036810185.pdb > /var/tmp/scwrl_2036810185.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2036810185.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_264896742.pdb -s /var/tmp/to_scwrl_264896742.seq -o /var/tmp/from_scwrl_264896742.pdb > /var/tmp/scwrl_264896742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_264896742.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1234375881.pdb -s /var/tmp/to_scwrl_1234375881.seq -o /var/tmp/from_scwrl_1234375881.pdb > /var/tmp/scwrl_1234375881.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1234375881.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_574478432.pdb -s /var/tmp/to_scwrl_574478432.seq -o /var/tmp/from_scwrl_574478432.pdb > /var/tmp/scwrl_574478432.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_574478432.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1561725807.pdb -s /var/tmp/to_scwrl_1561725807.seq -o /var/tmp/from_scwrl_1561725807.pdb > /var/tmp/scwrl_1561725807.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1561725807.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1901063372.pdb -s /var/tmp/to_scwrl_1901063372.seq -o /var/tmp/from_scwrl_1901063372.pdb > /var/tmp/scwrl_1901063372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1901063372.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_434214809.pdb -s /var/tmp/to_scwrl_434214809.seq -o /var/tmp/from_scwrl_434214809.pdb > /var/tmp/scwrl_434214809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_434214809.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1046860960.pdb -s /var/tmp/to_scwrl_1046860960.seq -o /var/tmp/from_scwrl_1046860960.pdb > /var/tmp/scwrl_1046860960.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1046860960.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_103059305.pdb -s /var/tmp/to_scwrl_103059305.seq -o /var/tmp/from_scwrl_103059305.pdb > /var/tmp/scwrl_103059305.log Error: Couldn't open file /var/tmp/from_scwrl_103059305.pdb or /var/tmp/from_scwrl_103059305.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_103059305_b.pdb or decoys//var/tmp/from_scwrl_103059305_b.pdb.gz for input Trying /var/tmp/from_scwrl_103059305_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_103059305_b.pdb or /var/tmp/from_scwrl_103059305_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_103059305_a.pdb or decoys//var/tmp/from_scwrl_103059305_a.pdb.gz for input Trying /var/tmp/from_scwrl_103059305_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_103059305_a.pdb or /var/tmp/from_scwrl_103059305_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_103059305.pdb or /var/tmp/from_scwrl_103059305_b.pdb or /var/tmp/from_scwrl_103059305_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1527797134.pdb -s /var/tmp/to_scwrl_1527797134.seq -o /var/tmp/from_scwrl_1527797134.pdb > /var/tmp/scwrl_1527797134.log Error: Couldn't open file /var/tmp/from_scwrl_1527797134.pdb or /var/tmp/from_scwrl_1527797134.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1527797134_b.pdb or decoys//var/tmp/from_scwrl_1527797134_b.pdb.gz for input Trying /var/tmp/from_scwrl_1527797134_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1527797134_b.pdb or /var/tmp/from_scwrl_1527797134_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1527797134_a.pdb or decoys//var/tmp/from_scwrl_1527797134_a.pdb.gz for input Trying /var/tmp/from_scwrl_1527797134_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1527797134_a.pdb or /var/tmp/from_scwrl_1527797134_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1527797134.pdb or /var/tmp/from_scwrl_1527797134_b.pdb or /var/tmp/from_scwrl_1527797134_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1990603754.pdb -s /var/tmp/to_scwrl_1990603754.seq -o /var/tmp/from_scwrl_1990603754.pdb > /var/tmp/scwrl_1990603754.log Error: Couldn't open file /var/tmp/from_scwrl_1990603754.pdb or /var/tmp/from_scwrl_1990603754.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1990603754_b.pdb or decoys//var/tmp/from_scwrl_1990603754_b.pdb.gz for input Trying /var/tmp/from_scwrl_1990603754_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1990603754_b.pdb or /var/tmp/from_scwrl_1990603754_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1990603754_a.pdb or decoys//var/tmp/from_scwrl_1990603754_a.pdb.gz for input Trying /var/tmp/from_scwrl_1990603754_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1990603754_a.pdb or /var/tmp/from_scwrl_1990603754_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1990603754.pdb or /var/tmp/from_scwrl_1990603754_b.pdb or /var/tmp/from_scwrl_1990603754_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_961058721.pdb -s /var/tmp/to_scwrl_961058721.seq -o /var/tmp/from_scwrl_961058721.pdb > /var/tmp/scwrl_961058721.log Error: Couldn't open file /var/tmp/from_scwrl_961058721.pdb or /var/tmp/from_scwrl_961058721.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_961058721_b.pdb or decoys//var/tmp/from_scwrl_961058721_b.pdb.gz for input Trying /var/tmp/from_scwrl_961058721_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_961058721_b.pdb or /var/tmp/from_scwrl_961058721_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_961058721_a.pdb or decoys//var/tmp/from_scwrl_961058721_a.pdb.gz for input Trying /var/tmp/from_scwrl_961058721_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_961058721_a.pdb or /var/tmp/from_scwrl_961058721_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_961058721.pdb or /var/tmp/from_scwrl_961058721_b.pdb or /var/tmp/from_scwrl_961058721_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1469654408.pdb -s /var/tmp/to_scwrl_1469654408.seq -o /var/tmp/from_scwrl_1469654408.pdb > /var/tmp/scwrl_1469654408.log Error: Couldn't open file /var/tmp/from_scwrl_1469654408.pdb or /var/tmp/from_scwrl_1469654408.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1469654408_b.pdb or decoys//var/tmp/from_scwrl_1469654408_b.pdb.gz for input Trying /var/tmp/from_scwrl_1469654408_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1469654408_b.pdb or /var/tmp/from_scwrl_1469654408_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1469654408_a.pdb or decoys//var/tmp/from_scwrl_1469654408_a.pdb.gz for input Trying /var/tmp/from_scwrl_1469654408_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1469654408_a.pdb or /var/tmp/from_scwrl_1469654408_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1469654408.pdb or /var/tmp/from_scwrl_1469654408_b.pdb or /var/tmp/from_scwrl_1469654408_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1035453239.pdb -s /var/tmp/to_scwrl_1035453239.seq -o /var/tmp/from_scwrl_1035453239.pdb > /var/tmp/scwrl_1035453239.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1035453239.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1044925084.pdb -s /var/tmp/to_scwrl_1044925084.seq -o /var/tmp/from_scwrl_1044925084.pdb > /var/tmp/scwrl_1044925084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1044925084.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1755337470.pdb -s /var/tmp/to_scwrl_1755337470.seq -o /var/tmp/from_scwrl_1755337470.pdb > /var/tmp/scwrl_1755337470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1755337470.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1105184800.pdb -s /var/tmp/to_scwrl_1105184800.seq -o /var/tmp/from_scwrl_1105184800.pdb > /var/tmp/scwrl_1105184800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1105184800.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1275100255.pdb -s /var/tmp/to_scwrl_1275100255.seq -o /var/tmp/from_scwrl_1275100255.pdb > /var/tmp/scwrl_1275100255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1275100255.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_879211366.pdb -s /var/tmp/to_scwrl_879211366.seq -o /var/tmp/from_scwrl_879211366.pdb > /var/tmp/scwrl_879211366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_879211366.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1176218776.pdb -s /var/tmp/to_scwrl_1176218776.seq -o /var/tmp/from_scwrl_1176218776.pdb > /var/tmp/scwrl_1176218776.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1176218776.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_132014514.pdb -s /var/tmp/to_scwrl_132014514.seq -o /var/tmp/from_scwrl_132014514.pdb > /var/tmp/scwrl_132014514.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_132014514.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2081581807.pdb -s /var/tmp/to_scwrl_2081581807.seq -o /var/tmp/from_scwrl_2081581807.pdb > /var/tmp/scwrl_2081581807.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2081581807.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1262639457.pdb -s /var/tmp/to_scwrl_1262639457.seq -o /var/tmp/from_scwrl_1262639457.pdb > /var/tmp/scwrl_1262639457.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1262639457.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1776077521.pdb -s /var/tmp/to_scwrl_1776077521.seq -o /var/tmp/from_scwrl_1776077521.pdb > /var/tmp/scwrl_1776077521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1776077521.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1655578777.pdb -s /var/tmp/to_scwrl_1655578777.seq -o /var/tmp/from_scwrl_1655578777.pdb > /var/tmp/scwrl_1655578777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1655578777.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_910052565.pdb -s /var/tmp/to_scwrl_910052565.seq -o /var/tmp/from_scwrl_910052565.pdb > /var/tmp/scwrl_910052565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_910052565.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_505858.pdb -s /var/tmp/to_scwrl_505858.seq -o /var/tmp/from_scwrl_505858.pdb > /var/tmp/scwrl_505858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_505858.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1584824800.pdb -s /var/tmp/to_scwrl_1584824800.seq -o /var/tmp/from_scwrl_1584824800.pdb > /var/tmp/scwrl_1584824800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1584824800.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1233059001.pdb -s /var/tmp/to_scwrl_1233059001.seq -o /var/tmp/from_scwrl_1233059001.pdb > /var/tmp/scwrl_1233059001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1233059001.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_541493172.pdb -s /var/tmp/to_scwrl_541493172.seq -o /var/tmp/from_scwrl_541493172.pdb > /var/tmp/scwrl_541493172.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_541493172.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2049412546.pdb -s /var/tmp/to_scwrl_2049412546.seq -o /var/tmp/from_scwrl_2049412546.pdb > /var/tmp/scwrl_2049412546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2049412546.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1122385539.pdb -s /var/tmp/to_scwrl_1122385539.seq -o /var/tmp/from_scwrl_1122385539.pdb > /var/tmp/scwrl_1122385539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1122385539.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_806389914.pdb -s /var/tmp/to_scwrl_806389914.seq -o /var/tmp/from_scwrl_806389914.pdb > /var/tmp/scwrl_806389914.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_806389914.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1136304781.pdb -s /var/tmp/to_scwrl_1136304781.seq -o /var/tmp/from_scwrl_1136304781.pdb > /var/tmp/scwrl_1136304781.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1136304781.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1696863971.pdb -s /var/tmp/to_scwrl_1696863971.seq -o /var/tmp/from_scwrl_1696863971.pdb > /var/tmp/scwrl_1696863971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1696863971.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_220632074.pdb -s /var/tmp/to_scwrl_220632074.seq -o /var/tmp/from_scwrl_220632074.pdb > /var/tmp/scwrl_220632074.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_220632074.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_889884507.pdb -s /var/tmp/to_scwrl_889884507.seq -o /var/tmp/from_scwrl_889884507.pdb > /var/tmp/scwrl_889884507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_889884507.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2131078780.pdb -s /var/tmp/to_scwrl_2131078780.seq -o /var/tmp/from_scwrl_2131078780.pdb > /var/tmp/scwrl_2131078780.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2131078780.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1267493034.pdb -s /var/tmp/to_scwrl_1267493034.seq -o /var/tmp/from_scwrl_1267493034.pdb > /var/tmp/scwrl_1267493034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1267493034.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_992943812.pdb -s /var/tmp/to_scwrl_992943812.seq -o /var/tmp/from_scwrl_992943812.pdb > /var/tmp/scwrl_992943812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_992943812.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1511392267.pdb -s /var/tmp/to_scwrl_1511392267.seq -o /var/tmp/from_scwrl_1511392267.pdb > /var/tmp/scwrl_1511392267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1511392267.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1110613141.pdb -s /var/tmp/to_scwrl_1110613141.seq -o /var/tmp/from_scwrl_1110613141.pdb > /var/tmp/scwrl_1110613141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1110613141.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1954002533.pdb -s /var/tmp/to_scwrl_1954002533.seq -o /var/tmp/from_scwrl_1954002533.pdb > /var/tmp/scwrl_1954002533.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1954002533.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_833563030.pdb -s /var/tmp/to_scwrl_833563030.seq -o /var/tmp/from_scwrl_833563030.pdb > /var/tmp/scwrl_833563030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_833563030.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2146066380.pdb -s /var/tmp/to_scwrl_2146066380.seq -o /var/tmp/from_scwrl_2146066380.pdb > /var/tmp/scwrl_2146066380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2146066380.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_851443970.pdb -s /var/tmp/to_scwrl_851443970.seq -o /var/tmp/from_scwrl_851443970.pdb > /var/tmp/scwrl_851443970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_851443970.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_441416853.pdb -s /var/tmp/to_scwrl_441416853.seq -o /var/tmp/from_scwrl_441416853.pdb > /var/tmp/scwrl_441416853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_441416853.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1103767534.pdb -s /var/tmp/to_scwrl_1103767534.seq -o /var/tmp/from_scwrl_1103767534.pdb > /var/tmp/scwrl_1103767534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1103767534.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2126544226.pdb -s /var/tmp/to_scwrl_2126544226.seq -o /var/tmp/from_scwrl_2126544226.pdb > /var/tmp/scwrl_2126544226.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2126544226.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1320628219.pdb -s /var/tmp/to_scwrl_1320628219.seq -o /var/tmp/from_scwrl_1320628219.pdb > /var/tmp/scwrl_1320628219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1320628219.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_132502664.pdb -s /var/tmp/to_scwrl_132502664.seq -o /var/tmp/from_scwrl_132502664.pdb > /var/tmp/scwrl_132502664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_132502664.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_111075093.pdb -s /var/tmp/to_scwrl_111075093.seq -o /var/tmp/from_scwrl_111075093.pdb > /var/tmp/scwrl_111075093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_111075093.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1254726379.pdb -s /var/tmp/to_scwrl_1254726379.seq -o /var/tmp/from_scwrl_1254726379.pdb > /var/tmp/scwrl_1254726379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1254726379.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1395142121.pdb -s /var/tmp/to_scwrl_1395142121.seq -o /var/tmp/from_scwrl_1395142121.pdb > /var/tmp/scwrl_1395142121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1395142121.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1887152614.pdb -s /var/tmp/to_scwrl_1887152614.seq -o /var/tmp/from_scwrl_1887152614.pdb > /var/tmp/scwrl_1887152614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1887152614.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_762821510.pdb -s /var/tmp/to_scwrl_762821510.seq -o /var/tmp/from_scwrl_762821510.pdb > /var/tmp/scwrl_762821510.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_762821510.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_157711039.pdb -s /var/tmp/to_scwrl_157711039.seq -o /var/tmp/from_scwrl_157711039.pdb > /var/tmp/scwrl_157711039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_157711039.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1887658472.pdb -s /var/tmp/to_scwrl_1887658472.seq -o /var/tmp/from_scwrl_1887658472.pdb > /var/tmp/scwrl_1887658472.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1887658472.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_200162663.pdb -s /var/tmp/to_scwrl_200162663.seq -o /var/tmp/from_scwrl_200162663.pdb > /var/tmp/scwrl_200162663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_200162663.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1390770040.pdb -s /var/tmp/to_scwrl_1390770040.seq -o /var/tmp/from_scwrl_1390770040.pdb > /var/tmp/scwrl_1390770040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1390770040.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_281667997.pdb -s /var/tmp/to_scwrl_281667997.seq -o /var/tmp/from_scwrl_281667997.pdb > /var/tmp/scwrl_281667997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_281667997.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_102091562.pdb -s /var/tmp/to_scwrl_102091562.seq -o /var/tmp/from_scwrl_102091562.pdb > /var/tmp/scwrl_102091562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_102091562.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_365671933.pdb -s /var/tmp/to_scwrl_365671933.seq -o /var/tmp/from_scwrl_365671933.pdb > /var/tmp/scwrl_365671933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_365671933.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1088057910.pdb -s /var/tmp/to_scwrl_1088057910.seq -o /var/tmp/from_scwrl_1088057910.pdb > /var/tmp/scwrl_1088057910.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1088057910.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1238396343.pdb -s /var/tmp/to_scwrl_1238396343.seq -o /var/tmp/from_scwrl_1238396343.pdb > /var/tmp/scwrl_1238396343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1238396343.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2062535904.pdb -s /var/tmp/to_scwrl_2062535904.seq -o /var/tmp/from_scwrl_2062535904.pdb > /var/tmp/scwrl_2062535904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2062535904.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1308689985.pdb -s /var/tmp/to_scwrl_1308689985.seq -o /var/tmp/from_scwrl_1308689985.pdb > /var/tmp/scwrl_1308689985.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1308689985.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2128280851.pdb -s /var/tmp/to_scwrl_2128280851.seq -o /var/tmp/from_scwrl_2128280851.pdb > /var/tmp/scwrl_2128280851.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2128280851.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2046131038.pdb -s /var/tmp/to_scwrl_2046131038.seq -o /var/tmp/from_scwrl_2046131038.pdb > /var/tmp/scwrl_2046131038.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2046131038.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_428699373.pdb -s /var/tmp/to_scwrl_428699373.seq -o /var/tmp/from_scwrl_428699373.pdb > /var/tmp/scwrl_428699373.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_428699373.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_973741016.pdb -s /var/tmp/to_scwrl_973741016.seq -o /var/tmp/from_scwrl_973741016.pdb > /var/tmp/scwrl_973741016.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_973741016.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1410039658.pdb -s /var/tmp/to_scwrl_1410039658.seq -o /var/tmp/from_scwrl_1410039658.pdb > /var/tmp/scwrl_1410039658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1410039658.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1539312514.pdb -s /var/tmp/to_scwrl_1539312514.seq -o /var/tmp/from_scwrl_1539312514.pdb > /var/tmp/scwrl_1539312514.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1539312514.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_780259902.pdb -s /var/tmp/to_scwrl_780259902.seq -o /var/tmp/from_scwrl_780259902.pdb > /var/tmp/scwrl_780259902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_780259902.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_96119041.pdb -s /var/tmp/to_scwrl_96119041.seq -o /var/tmp/from_scwrl_96119041.pdb > /var/tmp/scwrl_96119041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_96119041.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1537895247.pdb -s /var/tmp/to_scwrl_1537895247.seq -o /var/tmp/from_scwrl_1537895247.pdb > /var/tmp/scwrl_1537895247.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1537895247.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1631703872.pdb -s /var/tmp/to_scwrl_1631703872.seq -o /var/tmp/from_scwrl_1631703872.pdb > /var/tmp/scwrl_1631703872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631703872.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_537535895.pdb -s /var/tmp/to_scwrl_537535895.seq -o /var/tmp/from_scwrl_537535895.pdb > /var/tmp/scwrl_537535895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_537535895.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_494179135.pdb -s /var/tmp/to_scwrl_494179135.seq -o /var/tmp/from_scwrl_494179135.pdb > /var/tmp/scwrl_494179135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_494179135.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1610764451.pdb -s /var/tmp/to_scwrl_1610764451.seq -o /var/tmp/from_scwrl_1610764451.pdb > /var/tmp/scwrl_1610764451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1610764451.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1858164114.pdb -s /var/tmp/to_scwrl_1858164114.seq -o /var/tmp/from_scwrl_1858164114.pdb > /var/tmp/scwrl_1858164114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1858164114.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_626681799.pdb -s /var/tmp/to_scwrl_626681799.seq -o /var/tmp/from_scwrl_626681799.pdb > /var/tmp/scwrl_626681799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_626681799.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1721839544.pdb -s /var/tmp/to_scwrl_1721839544.seq -o /var/tmp/from_scwrl_1721839544.pdb > /var/tmp/scwrl_1721839544.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1721839544.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_965406847.pdb -s /var/tmp/to_scwrl_965406847.seq -o /var/tmp/from_scwrl_965406847.pdb > /var/tmp/scwrl_965406847.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_965406847.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2021823921.pdb -s /var/tmp/to_scwrl_2021823921.seq -o /var/tmp/from_scwrl_2021823921.pdb > /var/tmp/scwrl_2021823921.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2021823921.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1461508511.pdb -s /var/tmp/to_scwrl_1461508511.seq -o /var/tmp/from_scwrl_1461508511.pdb > /var/tmp/scwrl_1461508511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1461508511.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1728228356.pdb -s /var/tmp/to_scwrl_1728228356.seq -o /var/tmp/from_scwrl_1728228356.pdb > /var/tmp/scwrl_1728228356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1728228356.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_32051313.pdb -s /var/tmp/to_scwrl_32051313.seq -o /var/tmp/from_scwrl_32051313.pdb > /var/tmp/scwrl_32051313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_32051313.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1201683336.pdb -s /var/tmp/to_scwrl_1201683336.seq -o /var/tmp/from_scwrl_1201683336.pdb > /var/tmp/scwrl_1201683336.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1201683336.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1928391019.pdb -s /var/tmp/to_scwrl_1928391019.seq -o /var/tmp/from_scwrl_1928391019.pdb > /var/tmp/scwrl_1928391019.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1928391019.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1422821354.pdb -s /var/tmp/to_scwrl_1422821354.seq -o /var/tmp/from_scwrl_1422821354.pdb > /var/tmp/scwrl_1422821354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1422821354.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1483351333.pdb -s /var/tmp/to_scwrl_1483351333.seq -o /var/tmp/from_scwrl_1483351333.pdb > /var/tmp/scwrl_1483351333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1483351333.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2030482581.pdb -s /var/tmp/to_scwrl_2030482581.seq -o /var/tmp/from_scwrl_2030482581.pdb > /var/tmp/scwrl_2030482581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2030482581.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1788493287.pdb -s /var/tmp/to_scwrl_1788493287.seq -o /var/tmp/from_scwrl_1788493287.pdb > /var/tmp/scwrl_1788493287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1788493287.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_423925597.pdb -s /var/tmp/to_scwrl_423925597.seq -o /var/tmp/from_scwrl_423925597.pdb > /var/tmp/scwrl_423925597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_423925597.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1121395278.pdb -s /var/tmp/to_scwrl_1121395278.seq -o /var/tmp/from_scwrl_1121395278.pdb > /var/tmp/scwrl_1121395278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1121395278.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1703545545.pdb -s /var/tmp/to_scwrl_1703545545.seq -o /var/tmp/from_scwrl_1703545545.pdb > /var/tmp/scwrl_1703545545.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1703545545.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1732615582.pdb -s /var/tmp/to_scwrl_1732615582.seq -o /var/tmp/from_scwrl_1732615582.pdb > /var/tmp/scwrl_1732615582.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1732615582.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1102192482.pdb -s /var/tmp/to_scwrl_1102192482.seq -o /var/tmp/from_scwrl_1102192482.pdb > /var/tmp/scwrl_1102192482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1102192482.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1602192936.pdb -s /var/tmp/to_scwrl_1602192936.seq -o /var/tmp/from_scwrl_1602192936.pdb > /var/tmp/scwrl_1602192936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1602192936.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_13831308.pdb -s /var/tmp/to_scwrl_13831308.seq -o /var/tmp/from_scwrl_13831308.pdb > /var/tmp/scwrl_13831308.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_13831308.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2075933498.pdb -s /var/tmp/to_scwrl_2075933498.seq -o /var/tmp/from_scwrl_2075933498.pdb > /var/tmp/scwrl_2075933498.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2075933498.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_864748948.pdb -s /var/tmp/to_scwrl_864748948.seq -o /var/tmp/from_scwrl_864748948.pdb > /var/tmp/scwrl_864748948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_864748948.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1553143822.pdb -s /var/tmp/to_scwrl_1553143822.seq -o /var/tmp/from_scwrl_1553143822.pdb > /var/tmp/scwrl_1553143822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1553143822.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_708709754.pdb -s /var/tmp/to_scwrl_708709754.seq -o /var/tmp/from_scwrl_708709754.pdb > /var/tmp/scwrl_708709754.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_708709754.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_960867990.pdb -s /var/tmp/to_scwrl_960867990.seq -o /var/tmp/from_scwrl_960867990.pdb > /var/tmp/scwrl_960867990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_960867990.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_943555424.pdb -s /var/tmp/to_scwrl_943555424.seq -o /var/tmp/from_scwrl_943555424.pdb > /var/tmp/scwrl_943555424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_943555424.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_192929979.pdb -s /var/tmp/to_scwrl_192929979.seq -o /var/tmp/from_scwrl_192929979.pdb > /var/tmp/scwrl_192929979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_192929979.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1498403884.pdb -s /var/tmp/to_scwrl_1498403884.seq -o /var/tmp/from_scwrl_1498403884.pdb > /var/tmp/scwrl_1498403884.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1498403884.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1437734558.pdb -s /var/tmp/to_scwrl_1437734558.seq -o /var/tmp/from_scwrl_1437734558.pdb > /var/tmp/scwrl_1437734558.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1437734558.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1803694430.pdb -s /var/tmp/to_scwrl_1803694430.seq -o /var/tmp/from_scwrl_1803694430.pdb > /var/tmp/scwrl_1803694430.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1803694430.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1209084351.pdb -s /var/tmp/to_scwrl_1209084351.seq -o /var/tmp/from_scwrl_1209084351.pdb > /var/tmp/scwrl_1209084351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1209084351.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2064416358.pdb -s /var/tmp/to_scwrl_2064416358.seq -o /var/tmp/from_scwrl_2064416358.pdb > /var/tmp/scwrl_2064416358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2064416358.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1378050327.pdb -s /var/tmp/to_scwrl_1378050327.seq -o /var/tmp/from_scwrl_1378050327.pdb > /var/tmp/scwrl_1378050327.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1378050327.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_27007551.pdb -s /var/tmp/to_scwrl_27007551.seq -o /var/tmp/from_scwrl_27007551.pdb > /var/tmp/scwrl_27007551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_27007551.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1938756632.pdb -s /var/tmp/to_scwrl_1938756632.seq -o /var/tmp/from_scwrl_1938756632.pdb > /var/tmp/scwrl_1938756632.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1938756632.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_692075192.pdb -s /var/tmp/to_scwrl_692075192.seq -o /var/tmp/from_scwrl_692075192.pdb > /var/tmp/scwrl_692075192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_692075192.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1755235907.pdb -s /var/tmp/to_scwrl_1755235907.seq -o /var/tmp/from_scwrl_1755235907.pdb > /var/tmp/scwrl_1755235907.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1755235907.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1970807945.pdb -s /var/tmp/to_scwrl_1970807945.seq -o /var/tmp/from_scwrl_1970807945.pdb > /var/tmp/scwrl_1970807945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1970807945.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1893758528.pdb -s /var/tmp/to_scwrl_1893758528.seq -o /var/tmp/from_scwrl_1893758528.pdb > /var/tmp/scwrl_1893758528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1893758528.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1536143279.pdb -s /var/tmp/to_scwrl_1536143279.seq -o /var/tmp/from_scwrl_1536143279.pdb > /var/tmp/scwrl_1536143279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1536143279.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1246145652.pdb -s /var/tmp/to_scwrl_1246145652.seq -o /var/tmp/from_scwrl_1246145652.pdb > /var/tmp/scwrl_1246145652.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1246145652.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1229626214.pdb -s /var/tmp/to_scwrl_1229626214.seq -o /var/tmp/from_scwrl_1229626214.pdb > /var/tmp/scwrl_1229626214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1229626214.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1419142213.pdb -s /var/tmp/to_scwrl_1419142213.seq -o /var/tmp/from_scwrl_1419142213.pdb > /var/tmp/scwrl_1419142213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1419142213.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_887155294.pdb -s /var/tmp/to_scwrl_887155294.seq -o /var/tmp/from_scwrl_887155294.pdb > /var/tmp/scwrl_887155294.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_887155294.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1653551811.pdb -s /var/tmp/to_scwrl_1653551811.seq -o /var/tmp/from_scwrl_1653551811.pdb > /var/tmp/scwrl_1653551811.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1653551811.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_393053845.pdb -s /var/tmp/to_scwrl_393053845.seq -o /var/tmp/from_scwrl_393053845.pdb > /var/tmp/scwrl_393053845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_393053845.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_443217192.pdb -s /var/tmp/to_scwrl_443217192.seq -o /var/tmp/from_scwrl_443217192.pdb > /var/tmp/scwrl_443217192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_443217192.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1238683747.pdb -s /var/tmp/to_scwrl_1238683747.seq -o /var/tmp/from_scwrl_1238683747.pdb > /var/tmp/scwrl_1238683747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1238683747.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1495246327.pdb -s /var/tmp/to_scwrl_1495246327.seq -o /var/tmp/from_scwrl_1495246327.pdb > /var/tmp/scwrl_1495246327.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1495246327.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2045410128.pdb -s /var/tmp/to_scwrl_2045410128.seq -o /var/tmp/from_scwrl_2045410128.pdb > /var/tmp/scwrl_2045410128.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2045410128.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1252515055.pdb -s /var/tmp/to_scwrl_1252515055.seq -o /var/tmp/from_scwrl_1252515055.pdb > /var/tmp/scwrl_1252515055.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1252515055.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1423696179.pdb -s /var/tmp/to_scwrl_1423696179.seq -o /var/tmp/from_scwrl_1423696179.pdb > /var/tmp/scwrl_1423696179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1423696179.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_762675429.pdb -s /var/tmp/to_scwrl_762675429.seq -o /var/tmp/from_scwrl_762675429.pdb > /var/tmp/scwrl_762675429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_762675429.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_658175232.pdb -s /var/tmp/to_scwrl_658175232.seq -o /var/tmp/from_scwrl_658175232.pdb > /var/tmp/scwrl_658175232.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_658175232.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2132405933.pdb -s /var/tmp/to_scwrl_2132405933.seq -o /var/tmp/from_scwrl_2132405933.pdb > /var/tmp/scwrl_2132405933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2132405933.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1723543418.pdb -s /var/tmp/to_scwrl_1723543418.seq -o /var/tmp/from_scwrl_1723543418.pdb > /var/tmp/scwrl_1723543418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1723543418.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1601730655.pdb -s /var/tmp/to_scwrl_1601730655.seq -o /var/tmp/from_scwrl_1601730655.pdb > /var/tmp/scwrl_1601730655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1601730655.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_177852265.pdb -s /var/tmp/to_scwrl_177852265.seq -o /var/tmp/from_scwrl_177852265.pdb > /var/tmp/scwrl_177852265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_177852265.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1074463655.pdb -s /var/tmp/to_scwrl_1074463655.seq -o /var/tmp/from_scwrl_1074463655.pdb > /var/tmp/scwrl_1074463655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1074463655.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_891981567.pdb -s /var/tmp/to_scwrl_891981567.seq -o /var/tmp/from_scwrl_891981567.pdb > /var/tmp/scwrl_891981567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_891981567.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1981546695.pdb -s /var/tmp/to_scwrl_1981546695.seq -o /var/tmp/from_scwrl_1981546695.pdb > /var/tmp/scwrl_1981546695.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1981546695.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_136064360.pdb -s /var/tmp/to_scwrl_136064360.seq -o /var/tmp/from_scwrl_136064360.pdb > /var/tmp/scwrl_136064360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136064360.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_808914278.pdb -s /var/tmp/to_scwrl_808914278.seq -o /var/tmp/from_scwrl_808914278.pdb > /var/tmp/scwrl_808914278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_808914278.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1212113375.pdb -s /var/tmp/to_scwrl_1212113375.seq -o /var/tmp/from_scwrl_1212113375.pdb > /var/tmp/scwrl_1212113375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1212113375.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_163071911.pdb -s /var/tmp/to_scwrl_163071911.seq -o /var/tmp/from_scwrl_163071911.pdb > /var/tmp/scwrl_163071911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_163071911.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_600187263.pdb -s /var/tmp/to_scwrl_600187263.seq -o /var/tmp/from_scwrl_600187263.pdb > /var/tmp/scwrl_600187263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_600187263.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1904188567.pdb -s /var/tmp/to_scwrl_1904188567.seq -o /var/tmp/from_scwrl_1904188567.pdb > /var/tmp/scwrl_1904188567.log sh: line 1: 31440 Killed scwrl3 -i /var/tmp/to_scwrl_1904188567.pdb -s /var/tmp/to_scwrl_1904188567.seq -o /var/tmp/from_scwrl_1904188567.pdb >/var/tmp/scwrl_1904188567.log Error: Couldn't open file /var/tmp/from_scwrl_1904188567.pdb or /var/tmp/from_scwrl_1904188567.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1904188567_b.pdb or decoys//var/tmp/from_scwrl_1904188567_b.pdb.gz for input Trying /var/tmp/from_scwrl_1904188567_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1904188567_b.pdb or /var/tmp/from_scwrl_1904188567_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1904188567_a.pdb or decoys//var/tmp/from_scwrl_1904188567_a.pdb.gz for input Trying /var/tmp/from_scwrl_1904188567_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1904188567_a.pdb or /var/tmp/from_scwrl_1904188567_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1904188567.pdb or /var/tmp/from_scwrl_1904188567_b.pdb or /var/tmp/from_scwrl_1904188567_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1918307818.pdb -s /var/tmp/to_scwrl_1918307818.seq -o /var/tmp/from_scwrl_1918307818.pdb > /var/tmp/scwrl_1918307818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1918307818.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_423511562.pdb -s /var/tmp/to_scwrl_423511562.seq -o /var/tmp/from_scwrl_423511562.pdb > /var/tmp/scwrl_423511562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_423511562.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1650463448.pdb -s /var/tmp/to_scwrl_1650463448.seq -o /var/tmp/from_scwrl_1650463448.pdb > /var/tmp/scwrl_1650463448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1650463448.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1306967450.pdb -s /var/tmp/to_scwrl_1306967450.seq -o /var/tmp/from_scwrl_1306967450.pdb > /var/tmp/scwrl_1306967450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1306967450.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1669657214.pdb -s /var/tmp/to_scwrl_1669657214.seq -o /var/tmp/from_scwrl_1669657214.pdb > /var/tmp/scwrl_1669657214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1669657214.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_732606016.pdb -s /var/tmp/to_scwrl_732606016.seq -o /var/tmp/from_scwrl_732606016.pdb > /var/tmp/scwrl_732606016.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_732606016.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_578626018.pdb -s /var/tmp/to_scwrl_578626018.seq -o /var/tmp/from_scwrl_578626018.pdb > /var/tmp/scwrl_578626018.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_578626018.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_409328861.pdb -s /var/tmp/to_scwrl_409328861.seq -o /var/tmp/from_scwrl_409328861.pdb > /var/tmp/scwrl_409328861.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_409328861.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_238674180.pdb -s /var/tmp/to_scwrl_238674180.seq -o /var/tmp/from_scwrl_238674180.pdb > /var/tmp/scwrl_238674180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_238674180.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_971679863.pdb -s /var/tmp/to_scwrl_971679863.seq -o /var/tmp/from_scwrl_971679863.pdb > /var/tmp/scwrl_971679863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_971679863.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_852546053.pdb -s /var/tmp/to_scwrl_852546053.seq -o /var/tmp/from_scwrl_852546053.pdb > /var/tmp/scwrl_852546053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_852546053.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1477357927.pdb -s /var/tmp/to_scwrl_1477357927.seq -o /var/tmp/from_scwrl_1477357927.pdb > /var/tmp/scwrl_1477357927.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1477357927.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_319442544.pdb -s /var/tmp/to_scwrl_319442544.seq -o /var/tmp/from_scwrl_319442544.pdb > /var/tmp/scwrl_319442544.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_319442544.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_750472534.pdb -s /var/tmp/to_scwrl_750472534.seq -o /var/tmp/from_scwrl_750472534.pdb > /var/tmp/scwrl_750472534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_750472534.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_582389337.pdb -s /var/tmp/to_scwrl_582389337.seq -o /var/tmp/from_scwrl_582389337.pdb > /var/tmp/scwrl_582389337.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_582389337.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1743138723.pdb -s /var/tmp/to_scwrl_1743138723.seq -o /var/tmp/from_scwrl_1743138723.pdb > /var/tmp/scwrl_1743138723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1743138723.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1513147963.pdb -s /var/tmp/to_scwrl_1513147963.seq -o /var/tmp/from_scwrl_1513147963.pdb > /var/tmp/scwrl_1513147963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1513147963.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1240564568.pdb -s /var/tmp/to_scwrl_1240564568.seq -o /var/tmp/from_scwrl_1240564568.pdb > /var/tmp/scwrl_1240564568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1240564568.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1728061009.pdb -s /var/tmp/to_scwrl_1728061009.seq -o /var/tmp/from_scwrl_1728061009.pdb > /var/tmp/scwrl_1728061009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1728061009.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1089207734.pdb -s /var/tmp/to_scwrl_1089207734.seq -o /var/tmp/from_scwrl_1089207734.pdb > /var/tmp/scwrl_1089207734.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1089207734.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_694811577.pdb -s /var/tmp/to_scwrl_694811577.seq -o /var/tmp/from_scwrl_694811577.pdb > /var/tmp/scwrl_694811577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_694811577.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1905913274.pdb -s /var/tmp/to_scwrl_1905913274.seq -o /var/tmp/from_scwrl_1905913274.pdb > /var/tmp/scwrl_1905913274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1905913274.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_16187744.pdb -s /var/tmp/to_scwrl_16187744.seq -o /var/tmp/from_scwrl_16187744.pdb > /var/tmp/scwrl_16187744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_16187744.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 Skipped atom 207, because occupancy 1.0000000e+00 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1586793143.pdb -s /var/tmp/to_scwrl_1586793143.seq -o /var/tmp/from_scwrl_1586793143.pdb > /var/tmp/scwrl_1586793143.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1586793143.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1739976322.pdb -s /var/tmp/to_scwrl_1739976322.seq -o /var/tmp/from_scwrl_1739976322.pdb > /var/tmp/scwrl_1739976322.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1739976322.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_152252104.pdb -s /var/tmp/to_scwrl_152252104.seq -o /var/tmp/from_scwrl_152252104.pdb > /var/tmp/scwrl_152252104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_152252104.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_248223775.pdb -s /var/tmp/to_scwrl_248223775.seq -o /var/tmp/from_scwrl_248223775.pdb > /var/tmp/scwrl_248223775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_248223775.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_804606051.pdb -s /var/tmp/to_scwrl_804606051.seq -o /var/tmp/from_scwrl_804606051.pdb > /var/tmp/scwrl_804606051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_804606051.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_315324016.pdb -s /var/tmp/to_scwrl_315324016.seq -o /var/tmp/from_scwrl_315324016.pdb > /var/tmp/scwrl_315324016.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_315324016.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_848411038.pdb -s /var/tmp/to_scwrl_848411038.seq -o /var/tmp/from_scwrl_848411038.pdb > /var/tmp/scwrl_848411038.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_848411038.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_561310971.pdb -s /var/tmp/to_scwrl_561310971.seq -o /var/tmp/from_scwrl_561310971.pdb > /var/tmp/scwrl_561310971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_561310971.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_86148187.pdb -s /var/tmp/to_scwrl_86148187.seq -o /var/tmp/from_scwrl_86148187.pdb > /var/tmp/scwrl_86148187.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_86148187.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1271922599.pdb -s /var/tmp/to_scwrl_1271922599.seq -o /var/tmp/from_scwrl_1271922599.pdb > /var/tmp/scwrl_1271922599.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1271922599.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_64290772.pdb -s /var/tmp/to_scwrl_64290772.seq -o /var/tmp/from_scwrl_64290772.pdb > /var/tmp/scwrl_64290772.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_64290772.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0312)L66.O and (T0312)M67.N only 0.000 apart, marking (T0312)M67.N as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1393115638.pdb -s /var/tmp/to_scwrl_1393115638.seq -o /var/tmp/from_scwrl_1393115638.pdb > /var/tmp/scwrl_1393115638.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1393115638.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0312)E131.O and (T0312)Q132.N only 0.000 apart, marking (T0312)Q132.N as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_794096168.pdb -s /var/tmp/to_scwrl_794096168.seq -o /var/tmp/from_scwrl_794096168.pdb > /var/tmp/scwrl_794096168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_794096168.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_796896788.pdb -s /var/tmp/to_scwrl_796896788.seq -o /var/tmp/from_scwrl_796896788.pdb > /var/tmp/scwrl_796896788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_796896788.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1971741656.pdb -s /var/tmp/to_scwrl_1971741656.seq -o /var/tmp/from_scwrl_1971741656.pdb > /var/tmp/scwrl_1971741656.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1971741656.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1203425028.pdb -s /var/tmp/to_scwrl_1203425028.seq -o /var/tmp/from_scwrl_1203425028.pdb > /var/tmp/scwrl_1203425028.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1203425028.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1035570968.pdb -s /var/tmp/to_scwrl_1035570968.seq -o /var/tmp/from_scwrl_1035570968.pdb > /var/tmp/scwrl_1035570968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1035570968.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_795937872.pdb -s /var/tmp/to_scwrl_795937872.seq -o /var/tmp/from_scwrl_795937872.pdb > /var/tmp/scwrl_795937872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_795937872.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_2055971082.pdb -s /var/tmp/to_scwrl_2055971082.seq -o /var/tmp/from_scwrl_2055971082.pdb > /var/tmp/scwrl_2055971082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2055971082.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_365445249.pdb -s /var/tmp/to_scwrl_365445249.seq -o /var/tmp/from_scwrl_365445249.pdb > /var/tmp/scwrl_365445249.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_365445249.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1115380415.pdb -s /var/tmp/to_scwrl_1115380415.seq -o /var/tmp/from_scwrl_1115380415.pdb > /var/tmp/scwrl_1115380415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1115380415.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_658959969.pdb -s /var/tmp/to_scwrl_658959969.seq -o /var/tmp/from_scwrl_658959969.pdb > /var/tmp/scwrl_658959969.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_658959969.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_947834586.pdb -s /var/tmp/to_scwrl_947834586.seq -o /var/tmp/from_scwrl_947834586.pdb > /var/tmp/scwrl_947834586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_947834586.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_711035492.pdb -s /var/tmp/to_scwrl_711035492.seq -o /var/tmp/from_scwrl_711035492.pdb > /var/tmp/scwrl_711035492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_711035492.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_24624285.pdb -s /var/tmp/to_scwrl_24624285.seq -o /var/tmp/from_scwrl_24624285.pdb > /var/tmp/scwrl_24624285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_24624285.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_40915507.pdb -s /var/tmp/to_scwrl_40915507.seq -o /var/tmp/from_scwrl_40915507.pdb > /var/tmp/scwrl_40915507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_40915507.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 138 in servers/nFOLD_TS2.pdb.gz # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_291612854.pdb -s /var/tmp/to_scwrl_291612854.seq -o /var/tmp/from_scwrl_291612854.pdb > /var/tmp/scwrl_291612854.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_291612854.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1113832020.pdb -s /var/tmp/to_scwrl_1113832020.seq -o /var/tmp/from_scwrl_1113832020.pdb > /var/tmp/scwrl_1113832020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1113832020.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_735727084.pdb -s /var/tmp/to_scwrl_735727084.seq -o /var/tmp/from_scwrl_735727084.pdb > /var/tmp/scwrl_735727084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_735727084.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_50042481.pdb -s /var/tmp/to_scwrl_50042481.seq -o /var/tmp/from_scwrl_50042481.pdb > /var/tmp/scwrl_50042481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_50042481.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_1130019764.pdb -s /var/tmp/to_scwrl_1130019764.seq -o /var/tmp/from_scwrl_1130019764.pdb > /var/tmp/scwrl_1130019764.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1130019764.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 132 ; scwrl3 -i /var/tmp/to_scwrl_175036580.pdb -s /var/tmp/to_scwrl_175036580.seq -o /var/tmp/from_scwrl_175036580.pdb > /var/tmp/scwrl_175036580.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_175036580.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 34.6967 sec, elapsed time= 358.134 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate_1.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = 373.012 shub_TS1 costs 0 real_cost = 371.582 panther2_TS1-scwrl costs 0 real_cost = 403.72 panther2_TS1 costs 0 real_cost = 506.173 nFOLD_TS5-scwrl costs 0 real_cost = 360.407 nFOLD_TS5 costs 0 real_cost = 429.739 nFOLD_TS4-scwrl costs 0 real_cost = 360.407 nFOLD_TS4 costs 0 real_cost = 429.739 nFOLD_TS3-scwrl costs 0 real_cost = 362.225 nFOLD_TS3 costs 0 real_cost = 431.113 nFOLD_TS2-scwrl costs 0 real_cost = 457.584 nFOLD_TS2 costs 0 real_cost = 501.702 nFOLD_TS1-scwrl costs 0 real_cost = 360.407 nFOLD_TS1 costs 0 real_cost = 429.739 mGen-3D_TS1-scwrl costs 0 real_cost = 367.495 mGen-3D_TS1 costs 0 real_cost = 356.269 keasar-server_TS5-scwrl costs 0 real_cost = 257.393 keasar-server_TS5 costs 0 real_cost = 262.841 keasar-server_TS4-scwrl costs 0 real_cost = 120.517 keasar-server_TS4 costs 0 real_cost = 126.666 keasar-server_TS3-scwrl costs 0 real_cost = 308.541 keasar-server_TS3 costs 0 real_cost = 309.949 keasar-server_TS2-scwrl costs 0 real_cost = 165.92 keasar-server_TS2 costs 0 real_cost = 173.296 keasar-server_TS1-scwrl costs 0 real_cost = 130.24 keasar-server_TS1 costs 0 real_cost = 141.737 karypis.srv_TS5-scwrl costs 0 real_cost = 384.686 karypis.srv_TS5 costs 0 real_cost = 382.899 karypis.srv_TS4-scwrl costs 0 real_cost = 401.8 karypis.srv_TS4 costs 0 real_cost = 397.772 karypis.srv_TS3-scwrl costs 0 real_cost = 340.8 karypis.srv_TS3 costs 0 real_cost = 340.792 karypis.srv_TS2-scwrl costs 0 real_cost = 329.57 karypis.srv_TS2 costs 0 real_cost = 326.493 karypis.srv_TS1-scwrl costs 0 real_cost = 332.803 karypis.srv_TS1 costs 0 real_cost = 331.025 karypis.srv.4_TS5-scwrl costs 0 real_cost = 293.067 karypis.srv.4_TS5 costs 0 real_cost = 293.067 karypis.srv.4_TS4-scwrl costs 0 real_cost = 302.592 karypis.srv.4_TS4 costs 0 real_cost = 305.903 karypis.srv.4_TS3-scwrl costs 0 real_cost = 328.974 karypis.srv.4_TS3 costs 0 real_cost = 328.55 karypis.srv.4_TS2-scwrl costs 0 real_cost = 355.59 karypis.srv.4_TS2 costs 0 real_cost = 355.59 karypis.srv.4_TS1-scwrl costs 0 real_cost = 295.001 karypis.srv.4_TS1 costs 0 real_cost = 295.001 karypis.srv.2_TS5-scwrl costs 0 real_cost = 329.949 karypis.srv.2_TS5 costs 0 real_cost = 329.703 karypis.srv.2_TS4-scwrl costs 0 real_cost = 348.967 karypis.srv.2_TS4 costs 0 real_cost = 348.967 karypis.srv.2_TS3-scwrl costs 0 real_cost = 258.016 karypis.srv.2_TS3 costs 0 real_cost = 258.016 karypis.srv.2_TS2-scwrl costs 0 real_cost = 289.14 karypis.srv.2_TS2 costs 0 real_cost = 289.14 karypis.srv.2_TS1-scwrl costs 0 real_cost = 279.97 karypis.srv.2_TS1 costs 0 real_cost = 279.97 forecast-s_AL5-scwrl costs 0 real_cost = 340.192 forecast-s_AL5 costs 0 real_cost = 441.452 forecast-s_AL4-scwrl costs 0 real_cost = 456.14 forecast-s_AL4 costs 0 real_cost = 510.74 forecast-s_AL3-scwrl costs 0 real_cost = 406.62 forecast-s_AL3 costs 0 real_cost = 474.718 forecast-s_AL2-scwrl costs 0 real_cost = 394.107 forecast-s_AL2 costs 0 real_cost = 482.162 forecast-s_AL1-scwrl costs 0 real_cost = 416.879 forecast-s_AL1 costs 0 real_cost = 512.027 beautshotbase_TS1-scwrl costs 0 real_cost = 377.758 beautshotbase_TS1 costs 0 real_cost = 375.478 beautshot_TS1-scwrl costs 0 real_cost = 381.674 beautshot_TS1 costs 0 real_cost = 378.14 Zhang-Server_TS5-scwrl costs 0 real_cost = 88.6051 Zhang-Server_TS5 costs 0 real_cost = 88.6297 Zhang-Server_TS4-scwrl costs 0 real_cost = 242.56 Zhang-Server_TS4 costs 0 real_cost = 245.87 Zhang-Server_TS3-scwrl costs 0 real_cost = 246.205 Zhang-Server_TS3 costs 0 real_cost = 261.65 Zhang-Server_TS2-scwrl costs 0 real_cost = 229.405 Zhang-Server_TS2 costs 0 real_cost = 223.089 Zhang-Server_TS1-scwrl costs 0 real_cost = 212.951 Zhang-Server_TS1 costs 0 real_cost = 211.322 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 188.316 UNI-EID_sfst_AL1 costs 0 real_cost = 244.918 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 171.268 UNI-EID_expm_TS1 costs 0 real_cost = 230.193 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 71.5657 UNI-EID_bnmx_TS1 costs 0 real_cost = 157.278 SPARKS2_TS5-scwrl costs 0 real_cost = 286.161 SPARKS2_TS5 costs 0 real_cost = 290.825 SPARKS2_TS4-scwrl costs 0 real_cost = 312.513 SPARKS2_TS4 costs 0 real_cost = 312.107 SPARKS2_TS3-scwrl costs 0 real_cost = 344.299 SPARKS2_TS3 costs 0 real_cost = 344.057 SPARKS2_TS2-scwrl costs 0 real_cost = 281.435 SPARKS2_TS2 costs 0 real_cost = 282.854 SPARKS2_TS1-scwrl costs 0 real_cost = 299.911 SPARKS2_TS1 costs 0 real_cost = 299.655 SP4_TS5-scwrl costs 0 real_cost = 290.094 SP4_TS5 costs 0 real_cost = 294.666 SP4_TS4-scwrl costs 0 real_cost = 278.764 SP4_TS4 costs 0 real_cost = 282.467 SP4_TS3-scwrl costs 0 real_cost = 132.562 SP4_TS3 costs 0 real_cost = 132.992 SP4_TS2-scwrl costs 0 real_cost = 274.213 SP4_TS2 costs 0 real_cost = 273.433 SP4_TS1-scwrl costs 0 real_cost = 302.183 SP4_TS1 costs 0 real_cost = 301.471 SP3_TS5-scwrl costs 0 real_cost = 321.287 SP3_TS5 costs 0 real_cost = 322.379 SP3_TS4-scwrl costs 0 real_cost = 325.812 SP3_TS4 costs 0 real_cost = 326.72 SP3_TS3-scwrl costs 0 real_cost = 292.281 SP3_TS2-scwrl costs 0 real_cost = 342.921 SP3_TS2 costs 0 real_cost = 339.131 SP3_TS1-scwrl costs 0 real_cost = 279.032 SP3_TS1 costs 0 real_cost = 280.556 SAM_T06_server_TS5-scwrl costs 0 real_cost = 410.603 SAM_T06_server_TS5 costs 0 real_cost = 402.809 SAM_T06_server_TS4-scwrl costs 0 real_cost = 378.156 SAM_T06_server_TS4 costs 0 real_cost = 396.5 SAM_T06_server_TS3-scwrl costs 0 real_cost = 409.179 SAM_T06_server_TS3 costs 0 real_cost = 404.485 SAM_T06_server_TS2-scwrl costs 0 real_cost = 128.94 SAM_T06_server_TS2 costs 0 real_cost = 120.175 SAM_T06_server_TS1-scwrl costs 0 real_cost = 30.4203 SAM_T06_server_TS1 costs 0 real_cost = 31.2974 SAM-T02_AL4-scwrl costs 0 real_cost = 335.462 SAM-T02_AL4 costs 0 real_cost = 352.35 SAM-T02_AL3-scwrl costs 0 real_cost = 496.279 SAM-T02_AL3 costs 0 real_cost = 522.038 SAM-T02_AL2-scwrl costs 0 real_cost = 506.059 SAM-T02_AL2 costs 0 real_cost = 520.052 SAM-T02_AL1-scwrl costs 0 real_cost = 262.951 SAM-T02_AL1 costs 0 real_cost = 300.809 ROKKY_TS5-scwrl costs 0 real_cost = 294.614 ROKKY_TS5 costs 0 real_cost = 405.373 ROKKY_TS4-scwrl costs 0 real_cost = 308.274 ROKKY_TS4 costs 0 real_cost = 420.015 ROKKY_TS3-scwrl costs 0 real_cost = 272.52 ROKKY_TS3 costs 0 real_cost = 383.738 ROKKY_TS2-scwrl costs 0 real_cost = 282.275 ROKKY_TS2 costs 0 real_cost = 392.329 ROKKY_TS1-scwrl costs 0 real_cost = 283.51 ROKKY_TS1 costs 0 real_cost = 398.249 ROBETTA_TS5-scwrl costs 0 real_cost = 143.522 ROBETTA_TS5 costs 0 real_cost = 143.183 ROBETTA_TS4-scwrl costs 0 real_cost = 246.534 ROBETTA_TS4 costs 0 real_cost = 248.366 ROBETTA_TS3-scwrl costs 0 real_cost = 82.9276 ROBETTA_TS3 costs 0 real_cost = 84.1456 ROBETTA_TS2-scwrl costs 0 real_cost = 263.198 ROBETTA_TS2 costs 0 real_cost = 253.541 ROBETTA_TS1-scwrl costs 0 real_cost = 78.103 ROBETTA_TS1 costs 0 real_cost = 79.7041 RAPTOR_TS5-scwrl costs 0 real_cost = 210.199 RAPTOR_TS5 costs 0 real_cost = 206.373 RAPTOR_TS4-scwrl costs 0 real_cost = 295.45 RAPTOR_TS4 costs 0 real_cost = 294.629 RAPTOR_TS3-scwrl costs 0 real_cost = 294.299 RAPTOR_TS3 costs 0 real_cost = 297.189 RAPTOR_TS2-scwrl costs 0 real_cost = 250.478 RAPTOR_TS2 costs 0 real_cost = 249.181 RAPTOR_TS1-scwrl costs 0 real_cost = 271.724 RAPTOR_TS1 costs 0 real_cost = 272.306 RAPTORESS_TS5-scwrl costs 0 real_cost = 225.017 RAPTORESS_TS5 costs 0 real_cost = 228.666 RAPTORESS_TS4-scwrl costs 0 real_cost = 289.254 RAPTORESS_TS4 costs 0 real_cost = 290.312 RAPTORESS_TS3-scwrl costs 0 real_cost = 303.677 RAPTORESS_TS3 costs 0 real_cost = 304.675 RAPTORESS_TS2-scwrl costs 0 real_cost = 248.949 RAPTORESS_TS2 costs 0 real_cost = 251.141 RAPTORESS_TS1-scwrl costs 0 real_cost = 260.511 RAPTORESS_TS1 costs 0 real_cost = 262.782 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = 323.524 RAPTOR-ACE_TS5 costs 0 real_cost = 324.632 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = 300.238 RAPTOR-ACE_TS4 costs 0 real_cost = 302.398 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = 287.373 RAPTOR-ACE_TS3 costs 0 real_cost = 288.172 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = 350.068 RAPTOR-ACE_TS2 costs 0 real_cost = 351.036 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = 292.133 RAPTOR-ACE_TS1 costs 0 real_cost = 293.427 Pmodeller6_TS5-scwrl costs 0 real_cost = 120.704 Pmodeller6_TS5 costs 0 real_cost = 118.105 Pmodeller6_TS4-scwrl costs 0 real_cost = 131.256 Pmodeller6_TS4 costs 0 real_cost = 131.262 Pmodeller6_TS3-scwrl costs 0 real_cost = 101.379 Pmodeller6_TS3 costs 0 real_cost = 100.715 Pmodeller6_TS2-scwrl costs 0 real_cost = 143.522 Pmodeller6_TS2 costs 0 real_cost = 143.183 Pmodeller6_TS1-scwrl costs 0 real_cost = 78.103 Pmodeller6_TS1 costs 0 real_cost = 79.7041 Phyre-1_TS1-scwrl costs 0 real_cost = 210.292 Phyre-1_TS1 costs 0 real_cost = 202.874 Pcons6_TS5-scwrl costs 0 real_cost = 101.379 Pcons6_TS5 costs 0 real_cost = 100.715 Pcons6_TS4-scwrl costs 0 real_cost = 169.574 Pcons6_TS4 costs 0 real_cost = 169.636 Pcons6_TS3-scwrl costs 0 real_cost = 78.103 Pcons6_TS3 costs 0 real_cost = 79.7041 Pcons6_TS2-scwrl costs 0 real_cost = 145.384 Pcons6_TS2 costs 0 real_cost = 142.674 Pcons6_TS1-scwrl costs 0 real_cost = 120.704 Pcons6_TS1 costs 0 real_cost = 118.105 PROTINFO_TS5-scwrl costs 0 real_cost = 331.064 PROTINFO_TS5 costs 0 real_cost = 331.327 PROTINFO_TS4-scwrl costs 0 real_cost = 267.073 PROTINFO_TS4 costs 0 real_cost = 268.423 PROTINFO_TS3-scwrl costs 0 real_cost = 383.48 PROTINFO_TS3 costs 0 real_cost = 376.244 PROTINFO_TS2-scwrl costs 0 real_cost = 265.07 PROTINFO_TS2 costs 0 real_cost = 264.426 PROTINFO_TS1-scwrl costs 0 real_cost = 247.379 PROTINFO_TS1 costs 0 real_cost = 248.072 PROTINFO-AB_TS5-scwrl costs 0 real_cost = 249.896 PROTINFO-AB_TS5 costs 0 real_cost = 255.247 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 257.472 PROTINFO-AB_TS4 costs 0 real_cost = 256.492 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 256.318 PROTINFO-AB_TS3 costs 0 real_cost = 256.026 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 265.07 PROTINFO-AB_TS2 costs 0 real_cost = 264.426 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 253.26 PROTINFO-AB_TS1 costs 0 real_cost = 255.637 POMYSL_TS5-scwrl costs 0 real_cost = 285.77 POMYSL_TS5 costs 0 real_cost = 291.927 POMYSL_TS4-scwrl costs 0 real_cost = 325.431 POMYSL_TS4 costs 0 real_cost = 339.612 POMYSL_TS3-scwrl costs 0 real_cost = 277.656 POMYSL_TS3 costs 0 real_cost = 297.79 POMYSL_TS2-scwrl costs 0 real_cost = 299.939 POMYSL_TS2 costs 0 real_cost = 306.729 POMYSL_TS1-scwrl costs 0 real_cost = 318.005 POMYSL_TS1 costs 0 real_cost = 343.23 NN_PUT_lab_TS1-scwrl costs 0 real_cost = 288.486 NN_PUT_lab_TS1 costs 0 real_cost = 292.512 MetaTasser_TS5-scwrl costs 0 real_cost = 244.766 MetaTasser_TS5 costs 0 real_cost = 236.781 MetaTasser_TS4-scwrl costs 0 real_cost = 251.668 MetaTasser_TS4 costs 0 real_cost = 254.784 MetaTasser_TS3-scwrl costs 0 real_cost = 289.044 MetaTasser_TS3 costs 0 real_cost = 281.447 MetaTasser_TS2-scwrl costs 0 real_cost = 239.898 MetaTasser_TS2 costs 0 real_cost = 229.759 MetaTasser_TS1-scwrl costs 0 real_cost = 248.968 MetaTasser_TS1 costs 0 real_cost = 248.021 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 312.727 Ma-OPUS-server_TS5 costs 0 real_cost = 312.532 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 342.657 Ma-OPUS-server_TS4 costs 0 real_cost = 342.582 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = 116.778 Ma-OPUS-server_TS3 costs 0 real_cost = 117.042 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 317.042 Ma-OPUS-server_TS2 costs 0 real_cost = 317.12 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 265.768 Ma-OPUS-server_TS1 costs 0 real_cost = 265.294 LOOPP_TS5-scwrl costs 0 real_cost = 326.874 LOOPP_TS5 costs 0 real_cost = 326.138 LOOPP_TS4-scwrl costs 0 real_cost = 327.801 LOOPP_TS4 costs 0 real_cost = 330.546 LOOPP_TS3-scwrl costs 0 real_cost = 289.298 LOOPP_TS3 costs 0 real_cost = 286.004 LOOPP_TS2-scwrl costs 0 real_cost = 333.857 LOOPP_TS2 costs 0 real_cost = 337.513 LOOPP_TS1-scwrl costs 0 real_cost = 288.486 LOOPP_TS1 costs 0 real_cost = 292.512 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 905.466 Huber-Torda-Server_TS5 costs 0 real_cost = 908.466 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 395.804 Huber-Torda-Server_TS4 costs 0 real_cost = 422.334 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 421.745 Huber-Torda-Server_TS3 costs 0 real_cost = 453.423 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 398.543 Huber-Torda-Server_TS2 costs 0 real_cost = 451.229 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = 351.648 Huber-Torda-Server_TS1 costs 0 real_cost = 399.775 HHpred3_TS1-scwrl costs 0 real_cost = 347.291 HHpred3_TS1 costs 0 real_cost = 341.781 HHpred2_TS1-scwrl costs 0 real_cost = 127.457 HHpred2_TS1 costs 0 real_cost = 125.642 HHpred1_TS1-scwrl costs 0 real_cost = 361.44 HHpred1_TS1 costs 0 real_cost = 359.461 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = 308.063 GeneSilicoMetaServer_TS5 costs 0 real_cost = 308.028 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = 280.144 GeneSilicoMetaServer_TS4 costs 0 real_cost = 281.705 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = 285.285 GeneSilicoMetaServer_TS3 costs 0 real_cost = 286.094 FUNCTION_TS5-scwrl costs 0 real_cost = 286.904 FUNCTION_TS5 costs 0 real_cost = 286.584 FUNCTION_TS4-scwrl costs 0 real_cost = 296.576 FUNCTION_TS4 costs 0 real_cost = 299.743 FUNCTION_TS3-scwrl costs 0 real_cost = 295.407 FUNCTION_TS3 costs 0 real_cost = 297.373 FUNCTION_TS2-scwrl costs 0 real_cost = 299.56 FUNCTION_TS2 costs 0 real_cost = 298.911 FUNCTION_TS1-scwrl costs 0 real_cost = 300.309 FUNCTION_TS1 costs 0 real_cost = 299.16 FUGUE_AL5-scwrl costs 0 real_cost = 379.291 FUGUE_AL5 costs 0 real_cost = 459.541 FUGUE_AL4-scwrl costs 0 real_cost = 436.695 FUGUE_AL4 costs 0 real_cost = 436.695 FUGUE_AL3-scwrl costs 0 real_cost = 447.651 FUGUE_AL3 costs 0 real_cost = 512.764 FUGUE_AL2-scwrl costs 0 real_cost = 433.889 FUGUE_AL2 costs 0 real_cost = 513.888 FUGUE_AL1-scwrl costs 0 real_cost = 380.85 FUGUE_AL1 costs 0 real_cost = 482.27 FUGMOD_TS5-scwrl costs 0 real_cost = 320.786 FUGMOD_TS5 costs 0 real_cost = 320.203 FUGMOD_TS4-scwrl costs 0 real_cost = 311.753 FUGMOD_TS4 costs 0 real_cost = 311.985 FUGMOD_TS3-scwrl costs 0 real_cost = 435.51 FUGMOD_TS3 costs 0 real_cost = 433.566 FUGMOD_TS2-scwrl costs 0 real_cost = 363.447 FUGMOD_TS2 costs 0 real_cost = 361.237 FUGMOD_TS1-scwrl costs 0 real_cost = 366.343 FUGMOD_TS1 costs 0 real_cost = 365.776 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 334.719 FPSOLVER-SERVER_TS5 costs 0 real_cost = 334.418 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 323.155 FPSOLVER-SERVER_TS4 costs 0 real_cost = 324.03 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 340.838 FPSOLVER-SERVER_TS3 costs 0 real_cost = 340.983 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 331.044 FPSOLVER-SERVER_TS2 costs 0 real_cost = 333.084 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 339.601 FPSOLVER-SERVER_TS1 costs 0 real_cost = 340.228 FORTE2_AL5-scwrl costs 0 real_cost = 367.255 FORTE2_AL5 costs 0 real_cost = 452.326 FORTE2_AL4-scwrl costs 0 real_cost = 312.286 FORTE2_AL4 costs 0 real_cost = 412.354 FORTE2_AL3-scwrl costs 0 real_cost = 327.523 FORTE2_AL3 costs 0 real_cost = 420.496 FORTE2_AL2-scwrl costs 0 real_cost = 318.91 FORTE2_AL2 costs 0 real_cost = 406.449 FORTE2_AL1-scwrl costs 0 real_cost = 165.67 FORTE2_AL1 costs 0 real_cost = 275.324 FORTE1_AL5-scwrl costs 0 real_cost = 379.022 FORTE1_AL5 costs 0 real_cost = 491.88 FORTE1_AL4-scwrl costs 0 real_cost = 442.475 FORTE1_AL4 costs 0 real_cost = 442.475 FORTE1_AL3-scwrl costs 0 real_cost = 367.255 FORTE1_AL3 costs 0 real_cost = 452.326 FORTE1_AL2-scwrl costs 0 real_cost = 165.67 FORTE1_AL2 costs 0 real_cost = 275.324 FORTE1_AL1-scwrl costs 0 real_cost = 313.121 FORTE1_AL1 costs 0 real_cost = 414.482 FOLDpro_TS5-scwrl costs 0 real_cost = 264.418 FOLDpro_TS5 costs 0 real_cost = 266.257 FOLDpro_TS4-scwrl costs 0 real_cost = 342.023 FOLDpro_TS4 costs 0 real_cost = 342.123 FOLDpro_TS3-scwrl costs 0 real_cost = 293.165 FOLDpro_TS3 costs 0 real_cost = 293.685 FOLDpro_TS2-scwrl costs 0 real_cost = 336.445 FOLDpro_TS2 costs 0 real_cost = 337.001 FOLDpro_TS1-scwrl costs 0 real_cost = 231.686 FOLDpro_TS1 costs 0 real_cost = 230.092 FAMS_TS5-scwrl costs 0 real_cost = 145.546 FAMS_TS5 costs 0 real_cost = 147.839 FAMS_TS4-scwrl costs 0 real_cost = 300.309 FAMS_TS4 costs 0 real_cost = 299.16 FAMS_TS3-scwrl costs 0 real_cost = 188.27 FAMS_TS3 costs 0 real_cost = 185.92 FAMS_TS2-scwrl costs 0 real_cost = 369.315 FAMS_TS2 costs 0 real_cost = 369.337 FAMS_TS1-scwrl costs 0 real_cost = 188.27 FAMS_TS1 costs 0 real_cost = 185.92 FAMSD_TS5-scwrl costs 0 real_cost = 404.463 FAMSD_TS5 costs 0 real_cost = 402.63 FAMSD_TS4-scwrl costs 0 real_cost = 428.465 FAMSD_TS4 costs 0 real_cost = 426.364 FAMSD_TS3-scwrl costs 0 real_cost = 486.7 FAMSD_TS3 costs 0 real_cost = 484.32 FAMSD_TS2-scwrl costs 0 real_cost = 188.27 FAMSD_TS2 costs 0 real_cost = 185.92 FAMSD_TS1-scwrl costs 0 real_cost = 130.435 FAMSD_TS1 costs 0 real_cost = 133.496 Distill_TS5-scwrl costs 0 real_cost = 428.735 Distill_TS4-scwrl costs 0 real_cost = 428.656 Distill_TS3-scwrl costs 0 real_cost = 428.047 Distill_TS2-scwrl costs 0 real_cost = 429.268 Distill_TS1-scwrl costs 0 real_cost = 424.842 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 300.207 CaspIta-FOX_TS5 costs 0 real_cost = 299.414 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 389.233 CaspIta-FOX_TS4 costs 0 real_cost = 388.704 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 413.408 CaspIta-FOX_TS3 costs 0 real_cost = 411.722 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 370.933 CaspIta-FOX_TS2 costs 0 real_cost = 368.906 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 137.324 CaspIta-FOX_TS1 costs 0 real_cost = 140.131 CIRCLE_TS5-scwrl costs 0 real_cost = 265.148 CIRCLE_TS5 costs 0 real_cost = 261.207 CIRCLE_TS4-scwrl costs 0 real_cost = 188.27 CIRCLE_TS4 costs 0 real_cost = 185.92 CIRCLE_TS3-scwrl costs 0 real_cost = 145.546 CIRCLE_TS3 costs 0 real_cost = 147.839 CIRCLE_TS2-scwrl costs 0 real_cost = 187.424 CIRCLE_TS2 costs 0 real_cost = 191.702 CIRCLE_TS1-scwrl costs 0 real_cost = 267.222 CIRCLE_TS1 costs 0 real_cost = 261.48 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = 281.431 Bilab-ENABLE_TS5 costs 0 real_cost = 281.716 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = 261.67 Bilab-ENABLE_TS4 costs 0 real_cost = 261.67 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = 285.739 Bilab-ENABLE_TS3 costs 0 real_cost = 285.739 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = 288.322 Bilab-ENABLE_TS2 costs 0 real_cost = 288.271 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = 277.462 Bilab-ENABLE_TS1 costs 0 real_cost = 277.466 BayesHH_TS1-scwrl costs 0 real_cost = 384.042 BayesHH_TS1 costs 0 real_cost = 383.677 ABIpro_TS5-scwrl costs 0 real_cost = 288.354 ABIpro_TS5 costs 0 real_cost = 288.282 ABIpro_TS4-scwrl costs 0 real_cost = 237.381 ABIpro_TS4 costs 0 real_cost = 237.398 ABIpro_TS3-scwrl costs 0 real_cost = 260.777 ABIpro_TS3 costs 0 real_cost = 260.762 ABIpro_TS2-scwrl costs 0 real_cost = 313.695 ABIpro_TS2 costs 0 real_cost = 313.695 ABIpro_TS1-scwrl costs 0 real_cost = 271.423 ABIpro_TS1 costs 0 real_cost = 271.423 3Dpro_TS5-scwrl costs 0 real_cost = 272.589 3Dpro_TS5 costs 0 real_cost = 270.861 3Dpro_TS4-scwrl costs 0 real_cost = 313.695 3Dpro_TS4 costs 0 real_cost = 313.695 3Dpro_TS3-scwrl costs 0 real_cost = 271.423 3Dpro_TS3 costs 0 real_cost = 271.423 3Dpro_TS2-scwrl costs 0 real_cost = 292.003 3Dpro_TS2 costs 0 real_cost = 294.18 3Dpro_TS1-scwrl costs 0 real_cost = 293.165 3Dpro_TS1 costs 0 real_cost = 293.685 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 369.233 3D-JIGSAW_TS5 costs 0 real_cost = 365.97 3D-JIGSAW_TS4-scwrl costs 0 real_cost = 342.728 3D-JIGSAW_TS4 costs 0 real_cost = 342.525 3D-JIGSAW_TS3-scwrl costs 0 real_cost = 288.275 3D-JIGSAW_TS3 costs 0 real_cost = 302.694 3D-JIGSAW_TS2-scwrl costs 0 real_cost = 339.977 3D-JIGSAW_TS2 costs 0 real_cost = 339.067 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 391.574 3D-JIGSAW_TS1 costs 0 real_cost = 381.751 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = 356.064 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = 356.809 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = 359.946 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = 359.459 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = 347.893 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = 348.844 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = 395.232 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = 390.281 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = 443.539 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = 431.839 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 358.788 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 357.512 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = 359.985 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = 358.366 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = 355.02 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = 354.532 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 359.155 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 357.629 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 319.813 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = 319.021 scrambled-loop.pdb.gz costs 0 real_cost = 104.181 chimera-try9-try4.pdb.gz costs 0 real_cost = 102.667 T0312.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 79.4686 T0312.try9-opt2.pdb.gz costs 0 real_cost = 82.1497 T0312.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = 84.5888 T0312.try9-opt1.pdb.gz costs 0 real_cost = 80.1211 T0312.try9-opt1-scwrl.pdb.gz costs 0 real_cost = 77.402 T0312.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 111.375 T0312.try8-opt2.pdb.gz costs 0 real_cost = 111.174 T0312.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = 107.922 T0312.try8-opt1.pdb.gz costs 0 real_cost = 112.858 T0312.try8-opt1-scwrl.pdb.gz costs 0 real_cost = 113.359 T0312.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 70.4992 T0312.try7-opt2.pdb.gz costs 0 real_cost = 76.2986 T0312.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = 76.1636 T0312.try7-opt1.pdb.gz costs 0 real_cost = 80.1433 T0312.try7-opt1-scwrl.pdb.gz costs 0 real_cost = 76.0036 T0312.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 80.8257 T0312.try6-opt2.pdb.gz costs 0 real_cost = 81.9929 T0312.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = 82.285 T0312.try6-opt1.pdb.gz costs 0 real_cost = 79.0928 T0312.try6-opt1-scwrl.pdb.gz costs 0 real_cost = 77.7792 T0312.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 32.2341 T0312.try5-opt2.pdb.gz costs 0 real_cost = 35.8095 T0312.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = 39.7863 T0312.try5-opt1.pdb.gz costs 0 real_cost = 39.2211 T0312.try5-opt1-scwrl.pdb.gz costs 0 real_cost = 35.1438 T0312.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 111.59 T0312.try4-opt2.pdb.gz costs 0 real_cost = 117.103 T0312.try4-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 110.596 T0312.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = 113.443 T0312.try4-opt1.pdb.gz costs 0 real_cost = 116.679 T0312.try4-opt1-scwrl.pdb.gz costs 0 real_cost = 117.079 T0312.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 112.489 T0312.try3-opt2.pdb.gz costs 0 real_cost = 115.706 T0312.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 113.843 T0312.try3-opt1.pdb.gz costs 0 real_cost = 117.408 T0312.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 117.244 T0312.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 103.716 T0312.try2-opt2.pdb.gz costs 0 real_cost = 104.276 T0312.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = 100.292 T0312.try2-opt1.pdb.gz costs 0 real_cost = 104.442 T0312.try2-opt1-scwrl.pdb.gz costs 0 real_cost = 104.268 T0312.try18-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 108.66 T0312.try18-opt2.pdb.gz costs 0 real_cost = 109.129 T0312.try18-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 107.724 T0312.try18-opt2.gromacs0.pdb.gz costs 0 real_cost = 108.537 T0312.try18-opt1.pdb.gz costs 0 real_cost = 109.28 T0312.try18-opt1-scwrl.pdb.gz costs 0 real_cost = 108.995 T0312.try17-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 108.022 T0312.try17-opt2.pdb.gz costs 0 real_cost = 109.743 T0312.try17-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 109.711 T0312.try17-opt2.gromacs0.pdb.gz costs 0 real_cost = 111.326 T0312.try17-opt1.pdb.gz costs 0 real_cost = 107.408 T0312.try17-opt1-scwrl.pdb.gz costs 0 real_cost = 107.404 T0312.try16-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 107.173 T0312.try16-opt2.pdb.gz costs 0 real_cost = 109.167 T0312.try16-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 107.977 T0312.try16-opt2.gromacs0.pdb.gz costs 0 real_cost = 110.771 T0312.try16-opt1.pdb.gz costs 0 real_cost = 105.573 T0312.try16-opt1-scwrl.pdb.gz costs 0 real_cost = 105.296 T0312.try15-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 102.392 T0312.try15-opt2.pdb.gz costs 0 real_cost = 104.336 T0312.try15-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 102.492 T0312.try15-opt2.gromacs0.pdb.gz costs 0 real_cost = 104.977 T0312.try15-opt1.pdb.gz costs 0 real_cost = 104.785 T0312.try15-opt1-scwrl.pdb.gz costs 0 real_cost = 104.004 T0312.try14-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 137.122 T0312.try14-opt2.pdb.gz costs 0 real_cost = 137.849 T0312.try14-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 131.687 T0312.try14-opt2.gromacs0.pdb.gz costs 0 real_cost = 133.231 T0312.try14-opt1.pdb.gz costs 0 real_cost = 144.266 T0312.try14-opt1-scwrl.pdb.gz costs 0 real_cost = 145.872 T0312.try13-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 101.987 T0312.try13-opt2.pdb.gz costs 0 real_cost = 104.231 T0312.try13-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 102.267 T0312.try13-opt2.gromacs0.pdb.gz costs 0 real_cost = 104.748 T0312.try13-opt1.pdb.gz costs 0 real_cost = 105.261 T0312.try13-opt1-scwrl.pdb.gz costs 0 real_cost = 103.482 T0312.try12-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 19.2348 T0312.try12-opt2.pdb.gz costs 0 real_cost = 17.8186 T0312.try12-opt2.gromacs0.pdb.gz costs 0 real_cost = 25.0214 T0312.try12-opt1.pdb.gz costs 0 real_cost = 22.3612 T0312.try12-opt1-scwrl.pdb.gz costs 0 real_cost = 22.4375 T0312.try11-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 103.444 T0312.try11-opt2.pdb.gz costs 0 real_cost = 106.101 T0312.try11-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 104.4 T0312.try11-opt2.gromacs0.pdb.gz costs 0 real_cost = 106.771 T0312.try11-opt1.pdb.gz costs 0 real_cost = 106.412 T0312.try11-opt1-scwrl.pdb.gz costs 0 real_cost = 104.784 T0312.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 102.342 T0312.try10-opt2.pdb.gz costs 0 real_cost = 105.203 T0312.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 105.171 T0312.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = 107.424 T0312.try10-opt1.pdb.gz costs 0 real_cost = 103.623 T0312.try10-opt1-scwrl.pdb.gz costs 0 real_cost = 101.576 T0312.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 127.988 T0312.try1-opt2.pdb.gz costs 0 real_cost = 129.5 T0312.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 125.841 T0312.try1-opt1.pdb.gz costs 0 real_cost = 127.939 T0312.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 125.793 ../model5.ts-submitted costs 0 real_cost = 116.659 ../model4.ts-submitted costs 0 real_cost = 111.157 ../model3.ts-submitted costs 0 real_cost = 82.3232 ../model2.ts-submitted costs 0 real_cost = 104.209 ../model1.ts-submitted costs 0 real_cost = 107.729 align5 costs 0 real_cost = 391.444 align4 costs 0 real_cost = 370.885 align3 costs 0 real_cost = 404.795 align2 costs 0 real_cost = 382.763 align1 costs 0 real_cost = 138.027 T0312.try1-opt2.pdb costs 0 real_cost = 129.495 model5-scwrl costs 0 real_cost = 115.665 model5.ts-submitted costs 0 real_cost = 116.659 model4-scwrl costs 0 real_cost = 109.666 model4.ts-submitted costs 0 real_cost = 111.157 model3-scwrl costs 0 real_cost = 80.4442 model3.ts-submitted costs 0 real_cost = 82.3232 model2-scwrl costs 0 real_cost = 102.129 model2.ts-submitted costs 0 real_cost = 104.209 model1-scwrl costs 0 real_cost = 107.768 model1.ts-submitted costs 0 real_cost = 107.729 T0312_1.real.pdb costs 0 real_cost = -858.8 # command:CPU_time= 352.185 sec, elapsed time= 675.896 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate_1.rdb > sort.tmp mv -f sort.tmp decoys/evaluate_1.rdb mv -f decoys/evaluate_1.pretty decoys/evaluate_1.pretty.old mv: cannot stat `decoys/evaluate_1.pretty': No such file or directory make: [decoys/evaluate_1.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_1.rdb > decoys/evaluate_1.pretty