# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 5.76e-05 1ys7A 233 1.43e+00 1c1yB 77 1.58e+00 1c1yB d.15.1.5 37618 2c6cA 707 1.71e+00 1i5pA 633 1.85e+00 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2al3A 90 1.88e+00 1kv0A 66 2.01e+00 g.3.7.1 91040 2c0zA 216 2.03e+00 1upiA 225 2.40e+00 b.82.1.1 99757 1aym3 238 3.72e+00 1aym3 1kgsA 225 4.36e+00 a.4.6.1,c.23.1.1 68596,68597 1a6cA 513 4.46e+00 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1sn4A 64 5.07e+00 1aho g.3.7.1 44136 1euvB 86 5.56e+00 1a5r d.15.1.1 37598 2gnxA 365 5.76e+00 1xxlA 239 5.78e+00 1te0A 318 6.34e+00 1vkkA 154 6.70e+00 d.109.1.2 108669 1utyA 187 6.82e+00 b.147.1.1 108036 1mkaA 171 6.88e+00 1mkaA d.38.1.2 38543 2gh1A 301 7.69e+00 1ny4A 82 7.88e+00 b.40.4.5 92316 1qhqA 140 8.68e+00 1qhqA b.6.1.1 63326 2ffyA 358 9.08e+00 1vk6A 269 9.97e+00 d.113.1.4,d.113.1.4 100851,100852 1h7zA 194 1.01e+01 1qhvA b.21.1.1 60733 1uu3A 310 1.04e+01 d.144.1.7 99999 1ysrA 150 1.06e+01 1vizA 240 1.06e+01 c.1.4.1 100784 1ep0A 185 1.06e+01 1dzrA b.82.1.1 28080 1hf2A 210 1.07e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1e1oA 504 1.09e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 2cvjA 180 1.10e+01 1te5A 257 1.16e+01 d.153.1.1 106795 1djtA 64 1.16e+01 1aho g.3.7.1 44132 1wm3A 72 1.20e+01 1u9tA 354 1.25e+01 1fukA 165 1.28e+01 1fukA c.37.1.19 32409 2bb6A 414 1.36e+01 1vloA 381 1.42e+01 b.44.2.1,d.250.1.1 108838,108839 1z4rA 168 1.43e+01 1wn2A 121 1.51e+01 1y8qA 346 1.56e+01 1zud1 251 1.57e+01 1wosA 364 1.58e+01 b.44.2.1,d.250.1.1 109468,109469 2fp7B 172 1.79e+01 1oi6A 205 1.80e+01 b.82.1.1 103940 1p5fA 189 1.93e+01 c.23.16.2 94142 1ktgA 138 1.96e+01 d.113.1.1 72972 1nzaA 103 2.00e+01 d.58.5.2 86444 2erfA 209 2.02e+01 1d7uA 433 2.08e+01 2dkb c.67.1.4 34439 1gox 370 2.10e+01 1gox c.1.4.1 28607 2b0vA 153 2.33e+01 1vmfA 145 2.43e+01 2hlcA 230 2.46e+01 5ptp b.47.1.2 26074 1msc 129 2.57e+01 1msc d.85.1.1 40039 1z9lA 128 2.68e+01 1rkuA 206 2.72e+01 c.108.1.11 97627 1k92A 455 2.79e+01 c.26.2.1,d.210.1.1 68325,68326 1wojA 214 2.79e+01 1ydmA 187 2.90e+01 1vgyA 393 2.98e+01 c.56.5.4,d.58.19.1 100620,100621 1edqA 540 3.12e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1wrvA 308 3.25e+01 2f06A 144 3.29e+01 1zdrA 164 3.31e+01 2axwA 134 3.54e+01 1i8aA 189 3.61e+01 1i82A b.1.9.2 61951 1vphA 149 3.79e+01 1h1yA 228 3.83e+01 c.1.2.2 76506 1vl5A 260 3.92e+01 c.66.1.41 108720 1xkgA 312 4.04e+01 1vl4A 447 4.13e+01 d.283.1.1 108718 2bgcA 238 4.21e+01 1xubA 298 4.33e+01 1wfyA 104 4.39e+01 1qkkA 155 4.47e+01 1dbwA c.23.1.1 31104 1uv7A 110 4.56e+01 d.67.4.1 100040 1uzmA 247 4.67e+01 1twuA 139 4.77e+01 d.32.1.8 107413 1ro2A 216 4.82e+01 d.264.1.2 97665 1s5uA 138 4.83e+01 d.38.1.1 98573 1vlyA 338 4.85e+01 b.44.2.1,d.250.1.1 108871,108872 1q42A 201 4.91e+01 d.17.4.2 95776 1w41A 101 4.97e+01 1ro0A 216 5.15e+01 d.264.1.2 97664 1vhsA 175 5.20e+01 d.108.1.1 100698 1krs 120 5.27e+01 1krs b.40.4.1 25256 2btvA 901 5.33e+01 2btvA e.28.1.1 43376 2cxhA 217 5.33e+01 2a3nA 355 5.37e+01 1vmjA 151 5.40e+01 1lb6A 160 5.41e+01 b.8.1.1 73798 1dmhA 311 5.44e+01 1dmhA b.3.6.1 22633 1b6a 478 5.46e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 2fueA 262 5.48e+01 1xrtA 467 5.53e+01 1yhpA 212 5.53e+01 1i88A 389 5.60e+01 c.95.1.2,c.95.1.2 66070,66071 1gwyA 175 5.64e+01 b.97.1.1 83356 1gr0A 367 5.68e+01 c.2.1.3,d.81.1.3 70379,70380 1m4uA 206 5.69e+01 g.17.1.7 78625 1wl4A 397 5.78e+01 1oa2A 218 5.82e+01 b.29.1.11 86721 2f1rA 171 6.00e+01 1p0hA 318 6.00e+01 d.108.1.1 93866 1iyeA 309 6.04e+01 e.17.1.1 83786 1sdsA 117 6.04e+01 d.79.3.1 105439 1qstA 160 6.06e+01 1yghA d.108.1.1 40804 1vkmA 297 6.19e+01 c.138.1.1 108670 1cjcA 460 6.50e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1epfA 191 6.51e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1ze3H 122 6.55e+01 1gskA 513 6.59e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1qh8B 519 6.68e+01 1qguB c.92.2.3 35634 1gx3A 284 6.68e+01 d.3.1.5 70678 1erjA 393 6.78e+01 1erjA b.69.4.1 27660 1r3eA 309 6.92e+01 b.122.1.1,d.265.1.2 96907,96908 1w5rA 278 6.97e+01 1r4pA 297 6.97e+01 d.165.1.2 97025 1gheA 177 7.05e+01 d.108.1.1 76222 1k2eA 156 7.20e+01 d.113.1.1 72010 1t4hA 290 7.36e+01 d.144.1.7 106420 2bl9A 238 7.48e+01 2be3A 226 7.59e+01 1u8sA 192 7.63e+01 d.58.18.5,d.58.18.5 107737,107738 2aukA 190 7.67e+01 1m4lA 307 7.78e+01 c.56.5.1 78604 1xeoA 168 7.81e+01 1jg1A 235 7.87e+01 c.66.1.7 66661 1xsoA 150 7.93e+01 1mfmA b.1.8.1 22273 1sqiA 393 7.94e+01 d.32.1.3,d.32.1.3 105914,105915 1m1nB 522 7.96e+01 c.92.2.3 78418 1vjkA 98 8.00e+01 d.15.3.1 108631 1zjjA 263 8.22e+01 2b99A 156 8.23e+01 1q33A 292 8.25e+01 d.113.1.1 95657 1gxrA 337 8.32e+01 b.69.4.1 70722 1nytA 271 8.33e+01 c.2.1.7,c.58.1.5 86417,86418 2ca6A 386 8.45e+01 1z4vA 532 8.48e+01 2cpgA 45 8.63e+01 2cpgA a.43.1.3 17455 2b67A 204 8.66e+01 1mpp 361 8.68e+01 2rmpA b.50.1.2 26856 1f8eA 388 8.73e+01 2qwc b.68.1.1 59694 2ex5A 207 8.81e+01 1jatB 138 8.83e+01 1jatB d.20.1.1 62819 1t0tV 248 8.89e+01 d.58.4.10 106229 1w66A 232 8.92e+01 1kn6A 90 8.95e+01 d.58.3.3 72770 1xgsA 295 8.98e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153