# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 2.36e-03 1ys7A 233 8.35e-01 2al3A 90 2.14e+00 1te0A 318 2.57e+00 1zdrA 164 2.70e+00 1c1yB 77 2.88e+00 1c1yB d.15.1.5 37618 1ktgA 138 2.92e+00 d.113.1.1 72972 1vizA 240 4.18e+00 c.1.4.1 100784 1n6aA 259 4.31e+00 b.76.2.1,b.85.7.1 80121,80122 1a6cA 513 4.44e+00 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1i24A 404 4.69e+00 c.2.1.2 83663 1qhqA 140 5.06e+00 1qhqA b.6.1.1 63326 2f69A 261 5.46e+00 1jmcA 246 6.78e+00 1jmcA b.40.4.3,b.40.4.3 25300,25301 1wosA 364 7.49e+00 b.44.2.1,d.250.1.1 109468,109469 1nbcA 155 7.55e+00 1nbcA b.2.2.2 22390 1vcoA 550 8.56e+00 c.23.16.1,c.37.1.10 108508,108509 1zmdA 474 8.84e+00 1s5uA 138 9.30e+00 d.38.1.1 98573 1yx1A 264 9.55e+00 2apr 325 9.59e+00 2er7E b.50.1.2 26819 1jg1A 235 1.05e+01 c.66.1.7 66661 1qgvA 142 1.11e+01 1qgvA c.47.1.8 33056 2essA 248 1.12e+01 1kv7A 488 1.13e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 7ahlA 293 1.26e+01 7ahlA f.6.1.1 43812 1qfhA 212 1.26e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 1mpp 361 1.27e+01 2rmpA b.50.1.2 26856 1m4lA 307 1.29e+01 c.56.5.1 78604 2bklA 695 1.35e+01 1icpA 376 1.36e+01 1oyc c.1.4.1 62270 1c3mA 147 1.37e+01 1jotA b.77.3.1 27983 1gx3A 284 1.41e+01 d.3.1.5 70678 2fp7B 172 1.41e+01 1z9lA 128 1.45e+01 1q45A 391 1.46e+01 c.1.4.1 95780 2hlcA 230 1.57e+01 5ptp b.47.1.2 26074 1fukA 165 1.77e+01 1fukA c.37.1.19 32409 1f5mA 180 1.82e+01 1f5mB d.110.2.1 40895 1s1qA 145 1.82e+01 d.20.1.2 98351 1gutA 68 1.87e+01 b.40.6.1 65576 1w5rA 278 1.88e+01 1w41A 101 1.89e+01 2fblA 153 1.89e+01 2axwA 134 1.96e+01 1siqA 392 1.99e+01 a.29.3.1,e.6.1.1 105585,105586 1ohvA 472 1.99e+01 c.67.1.4 93031 1dciA 275 2.02e+01 1dciA c.14.1.3 30918 1k92A 455 2.07e+01 c.26.2.1,d.210.1.1 68325,68326 1v04A 355 2.07e+01 b.68.6.2 100240 2f7fA 494 2.08e+01 2cvjA 180 2.10e+01 1olrA 224 2.12e+01 b.29.1.11 93330 2b5nA 323 2.13e+01 2cwsA 237 2.16e+01 1gox 370 2.17e+01 1gox c.1.4.1 28607 1gy6A 127 2.18e+01 d.17.4.2 70736 1yirA 408 2.23e+01 1vixA 420 2.42e+01 c.56.5.4,d.58.19.1 100777,100778 1dl5A 317 2.50e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1dmhA 311 2.50e+01 1dmhA b.3.6.1 22633 1m1hA 248 2.53e+01 b.114.1.1,d.58.42.1 78415,78416 1v5eA 590 2.54e+01 1wm3A 72 2.55e+01 1rocA 155 2.57e+01 b.1.22.1 97673 1d3bA 75 2.59e+01 1d3bA b.38.1.1 24798 1qh8B 519 2.60e+01 1qguB c.92.2.3 35634 1pvmA 184 2.64e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1qj4A 257 2.64e+01 1qj4A c.69.1.20 34796 1rkd 309 2.68e+01 1rkd c.72.1.1 34928 1wn2A 121 2.77e+01 1vr9A 213 2.83e+01 1y14B 171 2.86e+01 1m1nB 522 2.87e+01 c.92.2.3 78418 1g2oA 268 2.91e+01 1b8oA c.56.2.1 60228 1p90A 145 2.92e+01 c.55.5.2 94377 1o75A 415 2.93e+01 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 1pgl1 185 3.07e+01 1xxlA 239 3.11e+01 1ny4A 82 3.14e+01 b.40.4.5 92316 1e44B 96 3.19e+01 1e44B b.101.1.1 59220 1ub0A 258 3.21e+01 c.72.1.2 88394 1ryiA 382 3.25e+01 1vjkA 98 3.27e+01 d.15.3.1 108631 1iz6A 138 3.35e+01 b.34.5.2,b.40.4.5 76976,76977 1ydwA 362 3.35e+01 2a3nA 355 3.40e+01 1ojqA 212 3.46e+01 d.166.1.1 93146 1kgsA 225 3.50e+01 a.4.6.1,c.23.1.1 68596,68597 2bi0A 337 3.52e+01 2gk3A 256 3.57e+01 2yhx 457 3.60e+01 2yhx i.12.1.1 46024 2bh8A 101 3.63e+01 2gh1A 301 3.75e+01 2coaA 125 3.79e+01 1f8eA 388 3.80e+01 2qwc b.68.1.1 59694 1gs5A 258 3.91e+01 c.73.1.2 70395 1qexA 288 3.93e+01 1qexA b.32.1.1 24425 2f96A 224 3.96e+01 1r55A 214 3.98e+01 2bw0A 329 3.99e+01 1noa 113 4.00e+01 2mcm b.1.7.1 22208 1eybA 471 4.02e+01 1ey2A b.82.1.4 28115 1nzaA 103 4.02e+01 d.58.5.2 86444 1n9eA 787 4.04e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 3tdt 274 4.06e+01 3tdt b.81.1.2 28053 1k2eA 156 4.06e+01 d.113.1.1 72010 1hqsA 423 4.11e+01 1iso c.77.1.1 61154 1tmxA 293 4.12e+01 1lwdA 413 4.19e+01 c.77.1.1 78265 1cqyA 99 4.20e+01 1b9zA b.3.1.1 22527 1oywA 523 4.21e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1euvB 86 4.24e+01 1a5r d.15.1.1 37598 1ec7A 446 4.28e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1dosA 358 4.35e+01 1dosA c.1.10.2 29175 1cjcA 460 4.40e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1p1lA 102 4.46e+01 d.58.5.2 87695 2f71A 298 4.52e+01 1p5tA 127 4.54e+01 b.55.1.2 94148 1kv0A 66 4.67e+01 g.3.7.1 91040 1t0bA 252 4.73e+01 c.23.16.6 106199 2cxxA 190 4.86e+01 1uk8A 282 4.94e+01 c.69.1.10 107907 2f20A 240 4.95e+01 1pa1A 310 4.98e+01 c.45.1.2 94404 2bl9A 238 5.01e+01 1eerB 227 5.14e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 1pt6A 213 5.15e+01 c.62.1.1 95091 1xubA 298 5.25e+01 2f6uA 234 5.28e+01 1od3A 168 5.32e+01 b.18.1.10 86825 1ogwA 76 5.33e+01 d.15.1.1 87001 1qkkA 155 5.36e+01 1dbwA c.23.1.1 31104 2dexX 671 5.40e+01 1xeoA 168 5.44e+01 1gteA 1025 5.49e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1z4vA 532 5.52e+01 1r6fA 310 5.66e+01 e.46.1.1 97149 1wrvA 308 5.69e+01 1fjgE 162 5.71e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 2eu9A 355 5.74e+01 1z4rA 168 5.80e+01 1i88A 389 5.90e+01 c.95.1.2,c.95.1.2 66070,66071 2aukA 190 5.91e+01 1aym3 238 5.91e+01 1aym3 1vl5A 260 5.93e+01 c.66.1.41 108720 1u8sA 192 5.94e+01 d.58.18.5,d.58.18.5 107737,107738 1pzsA 208 5.96e+01 b.1.8.1 104397 1yduA 170 5.97e+01 1vrmA 325 5.98e+01 1xezA 721 5.99e+01 2f06A 144 6.03e+01 2gnxA 365 6.07e+01 1te5A 257 6.15e+01 d.153.1.1 106795 1j1bA 420 6.15e+01 d.144.1.7 90758 1kn6A 90 6.16e+01 d.58.3.3 72770 2a74B 188 6.19e+01 1kte 105 6.19e+01 1kte c.47.1.1 32771 1sffA 426 6.20e+01 c.67.1.4 105482 1vybA 238 6.24e+01 d.151.1.1 108897 1moq 368 6.33e+01 1moq c.80.1.1 35302 1ezwA 349 6.49e+01 1ezwA c.1.16.3 29558 1w2wA 211 6.49e+01 c.124.1.5 109130 1zgzA 122 6.52e+01 1q8fA 313 6.69e+01 c.70.1.1 96203 1w8oA 601 6.74e+01 1edqA 540 6.76e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1gheA 177 6.78e+01 d.108.1.1 76222 2av4A 162 6.79e+01 1pkoA 139 6.79e+01 b.1.1.1 88147 1gvzA 237 6.80e+01 b.47.1.2 76360 1ig8A 486 6.85e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1gj7B 253 6.87e+01 2f0cA 191 6.88e+01 1sznA 417 6.95e+01 b.71.1.1,c.1.8.1 106162,106163 1dxrH 258 7.01e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1wvhA 134 7.06e+01 2bkyA 97 7.11e+01 3bamA 213 7.17e+01 1bam c.52.1.3 33288 1zo2A 129 7.25e+01 1naqA 112 7.37e+01 d.58.5.2 91761 1go3E 187 7.38e+01 b.40.4.5,d.230.1.1 83054,83055 1epfA 191 7.56e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1uekA 275 7.64e+01 d.14.1.5,d.58.26.5 88483,88484 2sga 181 7.64e+01 1qq4A b.47.1.1 25808 1xypA 190 7.65e+01 1axkA b.29.1.11 24327 1jkmB 361 7.81e+01 1jkmA c.69.1.2 34634 1bqsA 209 7.85e+01 1bqsA b.1.1.4,b.1.1.4 21704,21705 1gxjA 186 8.03e+01 d.215.1.1 70707 1w2wB 191 8.04e+01 1pb1A 416 8.13e+01 c.77.1.1 88014 1yhfA 115 8.14e+01 1kmtA 141 8.19e+01 b.1.18.8 77442 1r85A 379 8.20e+01 c.1.8.3 104839 1o4tA 133 8.21e+01 b.82.1.9 86622 1z2lA 423 8.21e+01 1erjA 393 8.24e+01 1erjA b.69.4.1 27660 1zx0A 236 8.27e+01 1jnyA 435 8.30e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2f1rA 171 8.33e+01 1rxyA 253 8.39e+01 c.56.2.1 98065 1qstA 160 8.41e+01 1yghA d.108.1.1 40804 1vyrA 364 8.60e+01 c.1.4.1 108906 1n5nA 180 8.63e+01 d.167.1.1 85336 1np6A 174 8.73e+01 c.37.1.10 85954 1vlyA 338 8.74e+01 b.44.2.1,d.250.1.1 108871,108872 1i5pA 633 8.79e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2b59B 172 8.85e+01 1ttuA 477 8.90e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1iyeA 309 8.92e+01 e.17.1.1 83786 1wcdJ 441 9.00e+01