# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 4.03e-05 1c1yB 77 2.02e-01 1c1yB d.15.1.5 37618 2al3A 90 3.56e-01 1kv0A 66 6.10e-01 g.3.7.1 91040 1ys7A 233 7.31e-01 1kgsA 225 8.77e-01 a.4.6.1,c.23.1.1 68596,68597 1wrvA 308 1.53e+00 2fp7B 172 1.87e+00 2c6cA 707 1.88e+00 1euvB 86 2.38e+00 1a5r d.15.1.1 37598 1wm3A 72 2.80e+00 1sn4A 64 2.94e+00 1aho g.3.7.1 44136 2gnxA 365 3.25e+00 1p5fA 189 3.43e+00 c.23.16.2 94142 1xxlA 239 4.34e+00 1a6cA 513 4.65e+00 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1zud1 251 4.88e+00 1aym3 238 5.23e+00 1aym3 1utyA 187 5.29e+00 b.147.1.1 108036 1nzaA 103 5.50e+00 d.58.5.2 86444 1uv7A 110 5.83e+00 d.67.4.1 100040 1gwyA 175 6.15e+00 b.97.1.1 83356 1vizA 240 7.01e+00 c.1.4.1 100784 1oa2A 218 7.02e+00 b.29.1.11 86721 1c3mA 147 8.17e+00 1jotA b.77.3.1 27983 8abp 306 8.20e+00 8abp c.93.1.1 35647 1djtA 64 8.55e+00 1aho g.3.7.1 44132 1te0A 318 8.93e+00 1rkuA 206 8.97e+00 c.108.1.11 97627 1wn2A 121 9.17e+00 2cvjA 180 9.90e+00 1z9lA 128 1.04e+01 1h1yA 228 1.06e+01 c.1.2.2 76506 1iyeA 309 1.08e+01 e.17.1.1 83786 1fukA 165 1.17e+01 1fukA c.37.1.19 32409 1qcxA 359 1.18e+01 1qcxA b.80.1.2 28028 1ydyA 356 1.20e+01 1hf2A 210 1.27e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1xrtA 467 1.28e+01 1v8yA 170 1.28e+01 1i5pA 633 1.28e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1k2eA 156 1.35e+01 d.113.1.1 72010 1e1oA 504 1.36e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1vl5A 260 1.38e+01 c.66.1.41 108720 1zkjA 359 1.39e+01 1zdrA 164 1.40e+01 2hlcA 230 1.43e+01 5ptp b.47.1.2 26074 1naqA 112 1.44e+01 d.58.5.2 91761 2ffyA 358 1.44e+01 2a3nA 355 1.48e+01 1ysrA 150 1.48e+01 1z4rA 168 1.50e+01 1qkkA 155 1.52e+01 1dbwA c.23.1.1 31104 1uzmA 247 1.53e+01 1idk 359 1.54e+01 1qcxA b.80.1.2 28025 1gox 370 1.58e+01 1gox c.1.4.1 28607 1edqA 540 1.59e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2f06A 144 1.62e+01 2f1rA 171 1.65e+01 1zmdA 474 1.68e+01 1u9tA 354 1.70e+01 1vjkA 98 1.78e+01 d.15.3.1 108631 1gx3A 284 1.80e+01 d.3.1.5 70678 1krs 120 1.83e+01 1krs b.40.4.1 25256 2b5hA 200 1.90e+01 1t4hA 290 1.98e+01 d.144.1.7 106420 1ktgA 138 1.98e+01 d.113.1.1 72972 1te5A 257 2.01e+01 d.153.1.1 106795 1ep0A 185 2.02e+01 1dzrA b.82.1.1 28080 1gs5A 258 2.06e+01 c.73.1.2 70395 1r3eA 309 2.07e+01 b.122.1.1,d.265.1.2 96907,96908 1cjcA 460 2.10e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1ezwA 349 2.11e+01 1ezwA c.1.16.3 29558 2c0zA 216 2.25e+01 1x89A 178 2.31e+01 1rocA 155 2.37e+01 b.1.22.1 97673 1b6a 478 2.39e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1zjjA 263 2.40e+01 1qstA 160 2.44e+01 1yghA d.108.1.1 40804 1mkaA 171 2.47e+01 1mkaA d.38.1.2 38543 1dmhA 311 2.60e+01 1dmhA b.3.6.1 22633 1gteA 1025 2.65e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1p0hA 318 2.68e+01 d.108.1.1 93866 1w5rA 278 2.72e+01 1qh8B 519 2.76e+01 1qguB c.92.2.3 35634 1vjoA 393 2.78e+01 c.67.1.3 100827 1vmjA 151 2.80e+01 1vkmA 297 2.84e+01 c.138.1.1 108670 1usgA 346 2.89e+01 c.93.1.1 99864 1sffA 426 2.93e+01 c.67.1.4 105482 2fueA 262 2.95e+01 1l5wA 796 2.98e+01 c.87.1.4 73605 2axwA 134 3.03e+01 1vloA 381 3.05e+01 b.44.2.1,d.250.1.1 108838,108839 1gheA 177 3.10e+01 d.108.1.1 76222 2ca6A 386 3.11e+01 1w41A 101 3.17e+01 1d7uA 433 3.17e+01 2dkb c.67.1.4 34439 2f6uA 234 3.25e+01 1pytA 94 3.28e+01 1pytA d.58.3.1 39064 1s3sG 127 3.37e+01 d.15.1.2 98457 1yx1A 264 3.37e+01 1jg1A 235 3.41e+01 c.66.1.7 66661 1jyhA 157 3.42e+01 d.60.1.3 71956 1xkgA 312 3.47e+01 1f8eA 388 3.50e+01 2qwc b.68.1.1 59694 2dexX 671 3.52e+01 1jkmB 361 3.54e+01 1jkmA c.69.1.2 34634 1vybA 238 3.55e+01 d.151.1.1 108897 2yhx 457 3.60e+01 2yhx i.12.1.1 46024 1quqA 129 3.62e+01 1quqA b.40.4.3 25303 1dl5A 317 3.64e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1k92A 455 3.65e+01 c.26.2.1,d.210.1.1 68325,68326 1y8qA 346 3.65e+01 1l2hA 153 3.66e+01 b.42.1.2 77655 1m4lA 307 3.67e+01 c.56.5.1 78604 2be3A 226 3.89e+01 1ohvA 472 3.91e+01 c.67.1.4 93031 1vcoA 550 3.93e+01 c.23.16.1,c.37.1.10 108508,108509 1t3qA 168 3.95e+01 a.56.1.1,d.15.4.2 106367,106368 1dosA 358 3.95e+01 1dosA c.1.10.2 29175 1w8sA 263 4.13e+01 1ydmA 187 4.16e+01 1kn6A 90 4.16e+01 d.58.3.3 72770 1oi6A 205 4.23e+01 b.82.1.1 103940 1m1nB 522 4.34e+01 c.92.2.3 78418 1q7sA 117 4.42e+01 c.131.1.1 96055 1vmfA 145 4.43e+01 2b67A 204 4.49e+01 2f69A 261 4.54e+01 1vk6A 269 4.58e+01 d.113.1.4,d.113.1.4 100851,100852 1vr3A 191 4.64e+01 2bwfA 77 4.67e+01 1ya5T 90 4.67e+01 1stmA 157 4.68e+01 1stmA b.121.7.1 23281 2a2cA 478 4.69e+01 1h7zA 194 4.78e+01 1qhvA b.21.1.1 60733 1r6fA 310 4.93e+01 e.46.1.1 97149 1zgzA 122 4.93e+01 1pwgA 349 4.96e+01 e.3.1.1 104340 1yqsA 349 4.96e+01 1p1lA 102 5.00e+01 d.58.5.2 87695 1n6aA 259 5.04e+01 b.76.2.1,b.85.7.1 80121,80122 7ahlA 293 5.09e+01 7ahlA f.6.1.1 43812 1qzzA 374 5.11e+01 a.4.5.29,c.66.1.12 96719,96720 2cpgA 45 5.12e+01 2cpgA a.43.1.3 17455 1egwA 77 5.19e+01 1mnmA d.88.1.1 40234 1zx2A 147 5.19e+01 1rkd 309 5.21e+01 1rkd c.72.1.1 34928 1wlsA 328 5.33e+01 1yvoA 172 5.33e+01 1n7kA 234 5.35e+01 c.1.10.1 85374 1pkoA 139 5.37e+01 b.1.1.1 88147 1yifA 533 5.47e+01 1ydwA 362 5.47e+01 1g291 372 5.50e+01 1g291 1s1qA 145 5.67e+01 d.20.1.2 98351 1u5uA 374 5.67e+01 1wthD 391 5.69e+01 1vkkA 154 5.84e+01 d.109.1.2 108669 1mvoA 136 5.85e+01 c.23.1.1 79513 1rz3A 201 5.90e+01 c.37.1.6 98132 2c2nA 339 5.96e+01 2fcjA 119 6.10e+01 1t0bA 252 6.12e+01 c.23.16.6 106199 1qzgA 187 6.23e+01 b.40.4.3 96643 2absA 383 6.24e+01 1segA 64 6.24e+01 g.3.7.1 105453 1osdA 72 6.25e+01 d.58.17.1 104022 1t0tV 248 6.33e+01 d.58.4.10 106229 2db3A 434 6.37e+01 1pvmA 184 6.39e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1eerB 227 6.42e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 1xdnA 277 6.46e+01 1p90A 145 6.46e+01 c.55.5.2 94377 1y0bA 197 6.50e+01 1zthA 258 6.52e+01 2an3A 289 6.53e+01 1aho 64 6.53e+01 1aho g.3.7.1 44127 2awgA 118 6.56e+01 1rloA 271 6.58e+01 1ogwA 76 6.58e+01 d.15.1.1 87001 1pmmA 466 6.71e+01 c.67.1.6 94901 2bcmA 165 6.72e+01 1kv7A 488 6.78e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1epfA 191 6.82e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1yhpA 212 6.86e+01 1tiqA 180 6.93e+01 d.108.1.1 107010 1upiA 225 6.93e+01 b.82.1.1 99757 2ccvA 101 6.96e+01 2bw0A 329 7.00e+01 1dciA 275 7.16e+01 1dciA c.14.1.3 30918 1b00A 127 7.17e+01 3chy c.23.1.1 31122 2bgcA 238 7.21e+01 1xzoA 174 7.23e+01 1wosA 364 7.27e+01 b.44.2.1,d.250.1.1 109468,109469 1dwkA 156 7.30e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1o75A 415 7.40e+01 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 1ojqA 212 7.49e+01 d.166.1.1 93146 1nf2A 268 7.54e+01 c.108.1.10 91849 1ukuA 102 7.69e+01 d.58.5.2 99533 1d4xG 126 7.74e+01 1d0nA d.109.1.1 59109 1f9zA 135 7.80e+01 1qipA d.32.1.1 38484 1cqyA 99 7.80e+01 1b9zA b.3.1.1 22527 1n9eA 787 7.82e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1z15A 344 7.83e+01 1eg2A 319 8.00e+01 1eg2A c.66.1.11 34249 1wl4A 397 8.01e+01 2f7fA 494 8.01e+01 2cg4A 152 8.03e+01 1yirA 408 8.05e+01 1t13A 158 8.07e+01 1y7rA 133 8.16e+01 1vr6A 350 8.18e+01 1sjyA 159 8.28e+01 d.113.1.1 98900 2fqxA 318 8.34e+01 2f96A 224 8.35e+01 2ahuA 531 8.39e+01 2b0vA 153 8.62e+01 1omyA 65 8.68e+01 g.3.7.1 93354 2gh1A 301 8.73e+01 1ztpA 251 8.74e+01 2bkaA 242 8.78e+01 1jmcA 246 8.84e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 2ex5A 207 8.90e+01 1pt6A 213 8.90e+01 c.62.1.1 95091 1ea7A 310 8.95e+01 c.41.1.1 70086