# List of top-scoring protein chains for T0312.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1xv2A	237	1.26e-03			
1viuA	203	3.22e+00		d.113.1.1	100771
1v0zA	389	1.06e+01			
1sg5A	86	1.12e+01			
1gskA	513	1.24e+01		b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
1wfxA	186	1.35e+01			
1i8dA	213	1.70e+01		b.43.4.3,b.43.4.3	61953,61954
1xsaA	153	1.80e+01			
1qgdA	662	2.50e+01		c.36.1.6,c.36.1.10,c.48.1.1	88367,88368,88369
1vizA	240	2.56e+01		c.1.4.1	100784
2d2eA	250	2.92e+01			
1te5A	257	3.04e+01		d.153.1.1	106795
1qndA	123	3.30e+01	1qndA	d.106.1.1	40794
1vgjA	184	3.34e+01			
1vheA	373	3.42e+01		b.49.3.1,c.56.5.4	100669,100670
1xhbA	472	3.54e+01			
1vphA	149	3.78e+01			
1x3hA	80	4.13e+01			
1c44A	123	4.75e+01	1qndA	d.106.1.1	40795
1x4gA	109	5.26e+01			
1lf2A	331	5.69e+01		b.50.1.2	77914
2bhuA	602	5.73e+01			
2biyA	310	5.77e+01			
1wjwA	112	5.88e+01			
1xe5A	329	5.88e+01			
1xdhA	331	5.90e+01			
1uu9A	286	5.99e+01		d.144.1.7	100002
1h1wA	289	6.04e+01		d.144.1.7	83460
1z5mA	286	6.04e+01			
1pfzA	380	6.06e+01	1smrA	b.50.1.2	26881
1z4rA	168	6.08e+01			
1q90C	127	6.31e+01		b.33.1.1	96242
1uu3A	310	6.36e+01		d.144.1.7	99999
1gr0A	367	6.42e+01		c.2.1.3,d.81.1.3	70379,70380
2bjuA	453	6.46e+01			
1ve4A	206	7.05e+01			
1zruA	264	7.22e+01			
2afrA	231	7.61e+01			
1va4A	279	7.88e+01		c.69.1.12	108458
1yadA	221	8.08e+01			
1skxA	313	8.13e+01			
1rkuA	206	8.14e+01		c.108.1.11	97627
1nrlA	316	8.16e+01		a.123.1.1	92091
1f66C	128	8.49e+01	1aoiC	a.22.1.1	16442
1kkqA	269	8.92e+01		a.123.1.1	68679
1hqmA	313	8.96e+01		i.8.1.1	45972