# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 3.31e-06 1rkuA 206 3.07e+00 c.108.1.11 97627 1h1wA 289 4.73e+00 d.144.1.7 83460 1uu3A 310 6.05e+00 d.144.1.7 99999 2al3A 90 6.52e+00 1te5A 257 7.49e+00 d.153.1.1 106795 1c1yB 77 7.88e+00 1c1yB d.15.1.5 37618 1ys7A 233 9.03e+00 1hf2A 210 1.01e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1i1kA 309 1.04e+01 1daaA e.17.1.1 61533 1kv0A 66 1.07e+01 g.3.7.1 91040 1euvB 86 1.16e+01 1a5r d.15.1.1 37598 1sn4A 64 1.19e+01 1aho g.3.7.1 44136 1g291 372 1.39e+01 1g291 1zmdA 474 1.39e+01 1zdrA 164 1.52e+01 1e1oA 504 1.63e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1qcwA 410 1.64e+01 1gox c.1.4.1 28622 1p5fA 189 1.79e+01 c.23.16.2 94142 2b29A 123 1.86e+01 1wm3A 72 1.98e+01 1v6fA 151 2.00e+01 d.109.1.2 108395 1upiA 225 2.01e+01 b.82.1.1 99757 2c6cA 707 2.09e+01 1vloA 381 2.11e+01 b.44.2.1,d.250.1.1 108838,108839 1k2eA 156 2.11e+01 d.113.1.1 72010 1kgsA 225 2.17e+01 a.4.6.1,c.23.1.1 68596,68597 1kbjA 412 2.21e+01 c.1.4.1 72280 1wosA 364 2.22e+01 b.44.2.1,d.250.1.1 109468,109469 1qqsA 174 2.26e+01 1nglA b.60.1.1 27143 1iyeA 309 2.33e+01 e.17.1.1 83786 1wrvA 308 2.34e+01 1zud1 251 2.43e+01 1s3iA 310 2.45e+01 b.46.1.1,c.65.1.1 98435,98436 7ahlA 293 2.47e+01 7ahlA f.6.1.1 43812 1b56 135 2.50e+01 1hmt b.60.1.2 27183 1nzaA 103 2.56e+01 d.58.5.2 86444 1krs 120 2.57e+01 1krs b.40.4.1 25256 1epfA 191 2.69e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 2gnxA 365 2.85e+01 1lylA 504 2.90e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1yrvA 169 2.92e+01 1j3kA 280 2.93e+01 c.71.1.1 84070 2axwA 134 3.04e+01 1yh6A 179 3.10e+01 1uv7A 110 3.20e+01 d.67.4.1 100040 1p1cA 199 3.31e+01 c.66.1.16 87669 1vizA 240 3.34e+01 c.1.4.1 100784 1idk 359 3.37e+01 1qcxA b.80.1.2 28025 1o9wA 177 3.46e+01 b.2.3.5 86713 1b6a 478 3.52e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1qhqA 140 3.65e+01 1qhqA b.6.1.1 63326 2c0zA 216 3.70e+01 1h7wA 1025 3.71e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1gteA 1025 3.71e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1z4rA 168 3.72e+01 2cvjA 180 3.88e+01 1fukA 165 3.91e+01 1fukA c.37.1.19 32409 1zk5A 176 3.92e+01 1wn2A 121 3.96e+01 1xclA 235 4.16e+01 1q42A 201 4.30e+01 d.17.4.2 95776 1vhsA 175 4.41e+01 d.108.1.1 100698 1xcrA 316 4.63e+01 2fueA 262 4.68e+01 1edqA 540 4.91e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1kv7A 488 5.11e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 2gh1A 301 5.16e+01 2bgcA 238 5.17e+01 1fsyA 358 5.23e+01 1gceA e.3.1.1 60016 1d7uA 433 5.45e+01 2dkb c.67.1.4 34439 1ny4A 82 5.48e+01 b.40.4.5 92316 2ffyA 358 5.60e+01 2atfA 200 5.72e+01 1y8cA 246 5.76e+01 1miwA 404 5.85e+01 a.173.1.1,d.218.1.4 79162,79163 1zx0A 236 5.96e+01 1sffA 426 5.97e+01 c.67.1.4 105482 1h8vA 218 6.04e+01 2nlrA b.29.1.11 60795 2btvA 901 6.06e+01 2btvA e.28.1.1 43376 1pi4A 358 6.11e+01 e.3.1.1 94700 1l0gA 358 6.13e+01 e.3.1.1 73400 1oa2A 218 6.20e+01 b.29.1.11 86721 2fo3A 125 6.36e+01 1ctn 540 6.38e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21876,29005,38439 1ep0A 185 6.44e+01 1dzrA b.82.1.1 28080 1p5vA 235 6.47e+01 b.1.11.1,b.7.2.1 87812,87813 1y8qA 346 6.56e+01 1naqA 112 6.59e+01 d.58.5.2 91761 1gskA 513 6.73e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 2dkb 433 6.89e+01 2dkb c.67.1.4 34438 1ylnA 252 7.18e+01 1msc 129 7.21e+01 1msc d.85.1.1 40039 1k92A 455 7.25e+01 c.26.2.1,d.210.1.1 68325,68326 1hskA 326 7.26e+01 2mbr d.145.1.2,d.146.1.1 61241,61242 1gox 370 7.32e+01 1gox c.1.4.1 28607 1c3mA 147 7.33e+01 1jotA b.77.3.1 27983 1qcxA 359 7.34e+01 1qcxA b.80.1.2 28028 1kl7A 514 7.49e+01 c.79.1.1 72678 1t6kA 278 7.53e+01 1nciA 110 7.53e+01 1edhA b.1.6.1 22191 1rfs 139 7.55e+01 1rfs b.33.1.1 24434 2b5hA 200 7.66e+01 2b3gA 123 7.77e+01 1xxlA 239 8.00e+01 2g3aA 152 8.07e+01 1ub0A 258 8.21e+01 c.72.1.2 88394 1oqyA 368 8.29e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1ydwA 362 8.47e+01 1rkd 309 8.54e+01 1rkd c.72.1.1 34928 2be3A 226 8.66e+01 1i88A 389 8.80e+01 c.95.1.2,c.95.1.2 66070,66071 2b99A 156 8.82e+01 1m4lA 307 8.85e+01 c.56.5.1 78604 1vl4A 447 8.92e+01 d.283.1.1 108718 2ctc 307 8.93e+01 1aye c.56.5.1 33802