# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g0uA 92 2.36e-01 1g4yB 101 5.41e-01 1g4yB f.15.1.1 60251 1v30A 124 1.08e+00 1ztsA 139 1.37e+00 1ma3A 253 1.66e+00 c.31.1.5 78883 2a2pA 129 1.73e+00 1u6tA 121 2.76e+00 2f4mA 295 3.24e+00 1q59A 172 4.01e+00 f.1.4.1 95881 1ddf 127 4.04e+00 1ddf a.77.1.2 18423 1wspA 84 4.05e+00 2d1uA 104 4.11e+00 1svpA 161 4.21e+00 1svpA b.47.1.3 26384 2axwA 134 4.67e+00 1y96B 85 4.95e+00 1d2oA 187 5.17e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1wmhA 89 5.34e+00 1hrkA 359 5.92e+00 1hrkA c.92.1.1 61228 2fj6A 82 6.00e+00 1n91A 108 6.55e+00 d.206.1.1 80326 2b3wA 168 8.05e+00 2f60K 64 9.00e+00 1pu1A 94 9.26e+00 d.266.1.1 104307 2fvtA 135 1.00e+01 2etxA 209 1.12e+01 1ppjE 196 1.25e+01 b.33.1.1,f.23.12.1 104260,104261 1qvcA 145 1.30e+01 3ullA b.40.4.3 25284 1kn7A 78 1.31e+01 j.12.1.1 84413 1ywmA 200 1.39e+01 1repC 251 1.41e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1xwvA 129 1.42e+01 1eg2A 319 1.52e+01 1eg2A c.66.1.11 34249 1zvdA 380 1.52e+01 1f3uB 171 1.60e+01 1f3uB b.65.1.1 27525 2ez6A 221 1.68e+01 1z6oA 212 1.96e+01 1wfeA 86 2.14e+01 1cf7B 95 2.19e+01 1cf7B a.4.5.17 16152 1mzgA 146 2.22e+01 d.224.1.1 79696 1bby 69 2.25e+01 2bby a.4.5.15 16149 1xedA 117 2.47e+01 1ygtA 111 2.47e+01 1o7dE 126 2.65e+01 1w2yA 229 2.84e+01 a.204.1.1 109140 1t0hA 132 2.95e+01 b.34.2.1 106207 1uheA 97 3.07e+01 1zhvA 134 3.13e+01 1t1vA 93 3.19e+01 c.47.1.14 106278 1k0hA 117 3.21e+01 b.106.1.2 71975 2g3aA 152 3.23e+01 1q9uA 130 3.31e+01 d.129.7.1 96314 2bpa1 426 3.41e+01 2bpa1 1oksA 56 3.49e+01 a.8.5.1 93271 2axpA 173 3.65e+01 1yg6A 193 3.73e+01 1v0dA 329 3.93e+01 d.4.1.7 108204 1jhfA 202 3.99e+01 a.4.5.2,b.87.1.1 63057,63058 1yzxA 226 4.14e+01 1in0A 163 4.15e+01 d.58.49.1,d.58.49.1 83694,83695 1g8lA 411 4.39e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2cu3A 64 4.49e+01 1ail 73 4.62e+01 1ail a.16.1.1 16381 2b7eA 59 4.75e+01 1yukA 103 4.75e+01 1z57A 339 4.81e+01 1aisA 182 4.99e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1m07A 111 5.03e+01 d.5.1.1 78328 1hqz1 141 5.69e+01 1fhgA 154 5.70e+01 1tlk b.1.1.4 21706 1x3qA 57 5.73e+01 1yu0A 381 6.05e+01 1n13B 113 6.29e+01 1gyxA 76 6.36e+01 d.80.1.1 76387 1zdzA 302 6.38e+01 1u3eM 174 6.49e+01 d.4.1.3,d.285.1.1 107640,107641 1vqoI 162 6.52e+01 1gwmA 153 6.68e+01 b.18.1.19 83348 1qopB 396 6.96e+01 2tysB c.79.1.1 35270 1m7gA 211 7.21e+01 c.37.1.4 78724 2fjlA 150 7.29e+01 2gw6A 123 7.32e+01 1gsoA 431 7.43e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2cttA 104 7.43e+01 1vkuA 100 7.45e+01 a.28.1.1 108690 1s0yB 71 7.56e+01 d.80.1.1 98315 1rwiA 270 7.61e+01 b.68.9.1 97987 1f06A 320 7.67e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 2bwbA 46 7.88e+01 1ze3C 205 8.07e+01 1qj4A 257 8.10e+01 1qj4A c.69.1.20 34796 2d3jA 157 8.12e+01 1i3jA 116 8.14e+01 1i3jA d.285.1.1 61594 1ft5A 211 8.18e+01 1bvb a.138.1.3 19681 1rqtA 37 8.18e+01 a.108.1.1 97771 1g8pA 350 8.48e+01 1g8pA c.37.1.20 60376 1tvxA 75 8.48e+01 1tvxA d.9.1.1 37441 1ucrA 78 8.51e+01 a.4.5.45 99188 1tafA 68 8.52e+01 1tafA a.22.1.3 16481 1yb3A 175 8.54e+01 1sheA 103 8.62e+01 d.274.1.1 105551 1div 149 8.65e+01 1div d.99.1.1,d.100.1.1 40692,40693 1nu4A 97 8.79e+01 d.58.7.1 80731 1knzA 164 8.90e+01 e.34.1.1 68709 1vfrA 218 8.91e+01 1vfrA d.90.1.1 40247