# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 1.43e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1zynA 202 1.53e-01 1hyuA 521 2.15e-01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1igs 248 4.29e-01 1a53 c.1.2.4 28565 1a53 247 4.42e-01 1a53 c.1.2.4 28564 1my6A 199 6.29e-01 a.2.11.1,d.44.1.1 85232,85233 2c3zA 222 8.64e-01 1ockA 412 1.10e+00 c.117.1.1 86802 1iz5A 249 1.44e+00 d.131.1.2,d.131.1.2 83834,83835 2fvtA 135 1.96e+00 1u2xA 474 1.98e+00 c.72.1.3 107622 1m93A 55 2.14e+00 e.1.1.1 91235 1rwiA 270 2.26e+00 b.68.9.1 97987 2bg5A 324 3.12e+00 1eceA 358 3.22e+00 1eceA c.1.8.3 28813 1thg 544 3.81e+00 1thg c.69.1.17 34763 1souA 194 3.92e+00 c.124.1.6 105858 2ewrA 170 3.98e+00 2fclA 169 3.99e+00 1qhlA 227 4.42e+00 1qhlA c.37.1.12 32382 1o58A 303 4.87e+00 c.79.1.1 92491 2rslA 140 5.22e+00 2rslA c.53.1.1 33345 2cxcA 144 5.71e+00 1rwzA 245 5.76e+00 d.131.1.2,d.131.1.2 98005,98006 1repC 251 6.24e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1lwjA 441 7.53e+00 b.71.1.1,c.1.8.1 74303,74304 1ur1A 378 7.83e+00 c.1.8.3 99804 1tf1A 198 8.07e+00 d.110.2.2 106826 1es6A 296 8.25e+00 1es6A b.31.1.1,b.31.1.1 83048,83049 1vr4A 103 8.39e+00 1pnsC 206 8.75e+00 i.1.1.1 88170 1a0rP 245 8.83e+00 1b9yC c.47.1.6 33054 1j5vA 351 9.13e+00 c.72.1.1 71585 1vfsA 386 9.39e+00 b.49.2.2,c.1.6.1 108584,108585 1iscA 192 1.02e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 2aioA 269 1.03e+01 1wspA 84 1.05e+01 1cc1S 283 1.05e+01 2frvA e.19.1.1 43313 2d1uA 104 1.08e+01 1od8A 313 1.10e+01 c.1.8.3 86838 1t9bA 677 1.12e+01 1sqsA 242 1.12e+01 c.23.5.5 98968 1t64A 377 1.13e+01 c.42.1.2 106543 1v0lA 313 1.13e+01 c.1.8.3 108207 1e0wA 313 1.16e+01 1taxA c.1.8.3 59150 2pil 159 1.17e+01 2pil d.24.1.1 38376 1q59A 172 1.22e+01 f.1.4.1 95881 1ma3A 253 1.22e+01 c.31.1.5 78883 1xewY 172 1.23e+01 2a2pA 129 1.23e+01 1id0A 152 1.25e+01 d.122.1.3 66111 2awpA 198 1.28e+01 1ri5A 298 1.29e+01 c.66.1.34 97502 1h2cA 140 1.29e+01 b.31.1.1 83462 1jhfA 202 1.37e+01 a.4.5.2,b.87.1.1 63057,63058 1g8lA 411 1.37e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1ri6A 343 1.38e+01 b.69.11.1 97503 1c52 131 1.43e+01 1c52 a.3.1.1 15810 1smlA 269 1.62e+01 1smlA d.157.1.1 42053 2g9iA 249 1.65e+01 1flcA 432 1.73e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1y96B 85 1.76e+01 1ygs 234 1.78e+01 1ygs b.26.1.1 23907 1o0pA 104 1.85e+01 d.58.7.1 86535 1xwvA 129 1.85e+01 1p5vA 235 1.89e+01 b.1.11.1,b.7.2.1 87812,87813 1of8A 370 1.92e+01 c.1.10.4 92819 1m07A 111 1.93e+01 d.5.1.1 78328 2gw6A 123 1.95e+01 1qi9A 556 1.97e+01 1qhbA a.111.1.2 19053 2f4mA 295 1.97e+01 1xuqA 212 1.98e+01 1vddA 228 1.99e+01 e.49.1.1 108519 2axwA 134 2.04e+01 1hdoA 206 2.10e+01 1he2A c.2.1.2 60965 1gyxA 76 2.17e+01 d.80.1.1 76387 1exg 110 2.25e+01 1exg b.2.2.1 22387 1pyfA 312 2.27e+01 c.1.7.1 95334 1tzaA 134 2.32e+01 b.1.23.1 107468 1ix9A 205 2.36e+01 a.2.11.1,d.44.1.1 76899,76900 1cby 259 2.36e+01 1cby d.103.1.1 40705 1xedA 117 2.38e+01 1i0hA 205 2.38e+01 1avmA a.2.11.1,d.44.1.1 15760,38685 2adbA 148 2.42e+01 1k38A 254 2.45e+01 e.3.1.1 84303 1xttA 216 2.48e+01 2gfgA 193 2.52e+01 1sr4B 261 2.56e+01 d.151.1.1 105949 1vr0A 247 2.57e+01 1p8kZ 254 2.59e+01 d.95.2.1,d.95.2.1 94361,94362 1ycyA 71 2.60e+01 1fw9A 164 2.65e+01 1fw9A d.190.1.1 60059 1tt8A 164 2.65e+01 2adoA 196 2.67e+01 1tiqA 180 2.71e+01 d.108.1.1 107010 2bbkL 125 2.76e+01 2bbkL g.21.1.1 44882 1plq 258 2.82e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1yh6A 179 2.82e+01 2b33A 140 2.82e+01 1ih8A 271 2.83e+01 2nsyA c.26.2.1 62377 1hqz1 141 2.89e+01 1kqpA 271 2.94e+01 c.26.2.1 72883 1qlmA 316 3.03e+01 1qlmA d.147.1.1 41765 2g6tA 306 3.11e+01 1regX 122 3.13e+01 1regX d.58.27.1 39406 2axpA 173 3.18e+01 1sek 378 3.21e+01 1sek e.1.1.1 42675 1ryjA 70 3.25e+01 d.15.3.2 98104 1qavA 90 3.28e+01 1qauA b.36.1.1 24777 2arcA 164 3.31e+01 2arcA b.82.4.1 28148 2aefA 234 3.32e+01 1xfcA 384 3.39e+01 2afbA 351 3.42e+01 1reqB 637 3.44e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1vetA 124 3.45e+01 d.110.7.1 108553 1o1zA 234 3.48e+01 c.1.18.3 86555 2etxA 209 3.50e+01 1l9xA 315 3.50e+01 c.23.16.1 73762 1n8kA 374 3.53e+01 b.35.1.2,c.2.1.1 80298,80299 1hetA 374 3.61e+01 2ohxA b.35.1.2,c.2.1.1 60975,60976 1ydyA 356 3.65e+01 2ohxA 374 3.71e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 1fjgC 239 3.76e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1ddf 127 3.76e+01 1ddf a.77.1.2 18423 1ej0A 180 3.77e+01 1ej0A c.66.1.2 34179 1jlyA 304 3.84e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1tljA 213 3.90e+01 d.282.1.1 107126 1nxiA 132 4.03e+01 d.58.47.1 86381 8rucI 123 4.04e+01 1rboC d.73.1.1 39629 1c7qA 445 4.09e+01 2pgi c.80.1.2 35307 1t8qA 336 4.14e+01 c.1.18.3 106669 1e9rA 437 4.29e+01 c.37.1.11 64827 1wb4A 297 4.40e+01 1gklA 297 4.54e+01 c.69.1.2 65250 1x8dA 104 4.57e+01 1pbjA 125 4.57e+01 d.37.1.1,d.37.1.1 94414,94415 1g0sA 209 4.66e+01 1g0sA d.113.1.1 60187 1h72C 296 4.67e+01 d.14.1.5,d.58.26.1 60712,60713 1whbA 157 4.68e+01 1juvA 193 4.68e+01 c.71.1.1 90912 1bby 69 4.69e+01 2bby a.4.5.15 16149 2aw5A 541 4.78e+01 1urnA 97 4.82e+01 1urnA d.58.7.1 39153 1vjpA 394 4.82e+01 c.2.1.3,d.81.1.3 100828,100829 2fj6A 82 4.82e+01 1ta3B 303 4.84e+01 c.1.8.3 106732 1s0pA 176 4.86e+01 a.192.1.1 98300 1o57A 291 4.87e+01 a.4.5.40,c.61.1.1 92483,92484 1bia 321 4.96e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2cygA 312 4.99e+01 1pp0A 199 5.00e+01 d.103.1.1 104211 2amhA 207 5.17e+01 2b7eA 59 5.37e+01 1v30A 124 5.40e+01 1nq6A 302 5.40e+01 c.1.8.3 92046 1mwwA 128 5.57e+01 d.80.1.4 91483 1pqxA 91 5.59e+01 d.267.1.1 104296 1a99A 344 5.70e+01 1pot c.94.1.1 35812 1skoA 143 5.74e+01 d.110.7.1 105676 1xsqA 168 5.76e+01 1xn5A 146 5.76e+01 1xseA 295 5.83e+01 1rovA 857 5.88e+01 a.119.1.1,b.12.1.1 97674,97675 1t0bA 252 5.88e+01 c.23.16.6 106199 1i6lA 328 5.93e+01 c.26.1.1 66041 1r5lA 262 5.97e+01 a.5.3.1,c.13.1.1 97099,97100 1f9vA 347 5.98e+01 1bg2 c.37.1.9 59745 1b25A 619 6.07e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1evuA 731 6.20e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 1h7zA 194 6.21e+01 1qhvA b.21.1.1 60733 1fhgA 154 6.21e+01 1tlk b.1.1.4 21706 1tlk 154 6.24e+01 1tlk b.1.1.4 21707 1mm4A 170 6.33e+01 f.4.1.2 79294 1y96A 86 6.34e+01 1aq0A 306 6.36e+01 1aq0A c.1.8.3 28842 1u6tA 121 6.51e+01 2amyA 246 6.57e+01 1qopB 396 6.59e+01 2tysB c.79.1.1 35270 1ta8A 332 6.59e+01 1vqzA 341 6.62e+01 1xhfA 123 6.63e+01 2bsdA 264 6.70e+01 1zruA 264 6.72e+01 1vcvA 226 6.77e+01 2g0uA 92 6.78e+01 1fhdA 312 6.81e+01 1taxA c.1.8.3 28915 1xkiA 162 6.83e+01 2myr 501 6.89e+01 1oiaA 95 6.90e+01 d.58.7.1 87051 1bdfA 235 6.95e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1xreA 217 6.95e+01 1ex0A 731 6.99e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2aw2A 120 6.99e+01 1ktjA 129 7.01e+01 b.1.18.7 72974 1yiyA 429 7.04e+01 1vm6A 228 7.05e+01 c.2.1.3,d.81.1.3 108876,108877 1i8fA 81 7.06e+01 1i8fA b.38.1.1 61959 1fh9A 312 7.06e+01 1taxA c.1.8.3 28913 1njhA 119 7.10e+01 b.128.1.1 85787 2flsA 132 7.10e+01 1cfr 285 7.16e+01 1cfr c.52.1.7 33312 1vp2A 208 7.21e+01 1r5jA 337 7.39e+01 c.77.1.5 97097 1yaxA 153 7.41e+01 1oa2A 218 7.44e+01 b.29.1.11 86721 1d2oA 187 7.44e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1lid 131 7.52e+01 1hmt b.60.1.2 27184 1v5tA 90 7.53e+01 d.15.1.1 108385 1h8vA 218 7.53e+01 2nlrA b.29.1.11 60795 2cxaA 256 7.53e+01 2g50A 530 7.55e+01 1nf3C 128 7.57e+01 b.36.1.1 85596 1o6dA 163 7.62e+01 c.116.1.3 92567 2fh7A 595 7.62e+01 2gi3A 476 7.64e+01 1rv9A 259 7.67e+01 d.194.1.2 105105 1wmhB 86 7.74e+01 1h09A 338 7.77e+01 b.109.1.1,c.1.8.8 83420,83421 1zthA 258 7.79e+01 1uc7A 125 7.80e+01 c.47.1.1 99163 1fwkA 296 7.81e+01 1fwkA d.14.1.5,d.58.26.1 37576,39398 1zhvA 134 7.82e+01 1dljA 402 7.85e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1eqjA 511 7.98e+01 1ejjA c.105.1.1,c.76.1.3 59495,59496 1a8q 274 8.01e+01 1brt c.69.1.12 34702 1g6gA 127 8.03e+01 1g6gA b.26.1.2 23916 1xkqA 280 8.04e+01 2gvkA 317 8.07e+01 1o98A 511 8.08e+01 c.105.1.1,c.76.1.3 86684,86685 1gewA 356 8.09e+01 1gewA c.67.1.1 60470 2his 312 8.11e+01 1taxA c.1.8.3 28918 1wouA 123 8.12e+01 c.47.1.16 109471 1shsA 147 8.12e+01 1shsA b.15.1.1 23675 1dkuA 317 8.13e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1xdpA 687 8.14e+01 1d2rA 326 8.21e+01 1d2rB c.26.1.1 31572 1bbt1 213 8.27e+01 1qqp1 1mo9A 523 8.28e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1larA 575 8.28e+01 1larA c.45.1.2,c.45.1.2 32693,32694 1mixA 206 8.31e+01 a.11.2.1,b.55.1.5 79166,79167 1g7nA 131 8.33e+01 b.60.1.2 83274 1wjnA 97 8.33e+01 1zp4A 304 8.35e+01 1u3wA 374 8.39e+01 1fl2A 310 8.45e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1fzqA 181 8.53e+01 1hurA c.37.1.8 32060 1ep0A 185 8.57e+01 1dzrA b.82.1.1 28080 2bo4A 397 8.62e+01 1vhqA 232 8.67e+01 c.23.16.2 100696 1je6A 275 8.68e+01 b.1.1.2,d.19.1.1 71638,71639 1dmuA 299 8.74e+01 1dmuA c.52.1.4 33294 2hvm 273 8.82e+01 1cnv c.1.8.5 28985 1tuoA 464 8.91e+01 1fg7A 356 8.92e+01 1gewA c.67.1.1 59819 1dzlA 505 8.97e+01 1dzlA b.121.6.1 23586