# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2napA 723 1.74e+00 2napA b.52.2.2,c.81.1.1 26926,35334 2c3mA 1231 1.95e+00 1nuyA 337 3.16e+00 e.7.1.1 86213 1t3qB 788 3.21e+00 d.41.1.1,d.133.1.1 106369,106370 1wucA 250 5.36e+00 1wzzA 334 5.45e+00 1dfmA 223 6.35e+00 1d2iA c.52.1.5 33295 1uq5A 263 6.52e+00 d.165.1.1 99778 1sgjA 284 6.75e+00 c.1.12.5 105535 1uirA 314 6.84e+00 c.66.1.17 99429 3seb 238 7.24e+00 3seb b.40.2.2,d.15.6.1 25184,37773 2f2lA 167 7.66e+00 1pgl1 185 7.85e+00 1sqrA 95 8.07e+00 1vhnA 318 8.94e+00 c.1.4.1 100693 1vdwA 254 8.95e+00 e.7.1.1 100569 1m4lA 307 9.48e+00 c.56.5.1 78604 1uk8A 282 1.03e+01 c.69.1.10 107907 2d4qA 257 1.11e+01 1dbiA 280 1.13e+01 1gci c.41.1.1 32543 1sglA 209 1.15e+01 d.124.1.1 105536 2a90A 240 1.15e+01 1ye8A 178 1.20e+01 1yueA 427 1.25e+01 2ae0X 345 1.46e+01 1v8aA 265 1.56e+01 c.72.1.2 100494 1a3aA 148 1.59e+01 1a3aA d.112.1.1 40917 1i1wA 303 1.59e+01 c.1.8.3 76732 1zupA 315 1.65e+01 1h2bA 359 1.68e+01 b.35.1.2,c.2.1.1 90543,90544 1nmoA 247 1.68e+01 c.135.1.1 91980 1r6lA 239 1.73e+01 d.14.1.4,d.101.1.1 97153,97154 1qh8A 478 1.76e+01 1qguA c.92.2.3 35633 1v04A 355 1.77e+01 b.68.6.2 100240 2cxxA 190 1.80e+01 2gaeA 346 1.82e+01 1zboA 210 1.83e+01 1vr0A 247 1.83e+01 1q5dA 419 1.84e+01 a.104.1.1 95891 1zx5A 300 1.86e+01 1wb4A 297 1.87e+01 1g5bA 221 1.90e+01 1g5bA d.159.1.3 60261 1v58A 241 2.00e+01 c.47.1.9,d.17.3.1 108371,108372 1zbsA 291 2.01e+01 1nnlA 225 2.09e+01 c.108.1.4 85906 1jeyA 609 2.12e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1oe8A 211 2.14e+01 a.45.1.1,c.47.1.5 86905,86906 1vhh 162 2.17e+01 1vhh d.65.1.2 39550 2akaB 299 2.21e+01 1zd0A 150 2.26e+01 1lbvA 252 2.26e+01 e.7.1.1 73813 1nijA 318 2.26e+01 c.37.1.10,d.237.1.1 85741,85742 1o58A 303 2.28e+01 c.79.1.1 92491 1kuuA 202 2.32e+01 d.153.2.1 73019 1sq9A 397 2.35e+01 b.69.4.1 105889 1z7lA 276 2.43e+01 1jy5A 212 2.43e+01 d.124.1.1 71940 1jd5A 124 2.45e+01 g.52.1.1 66544 1xpmA 396 2.55e+01 1oz9A 150 2.59e+01 d.92.1.15 93808 1p0kA 349 2.61e+01 c.1.4.1 87648 1mj5A 302 2.65e+01 c.69.1.8 91285 1ekqA 272 2.69e+01 1c3qA c.72.1.2 34941 1vdmA 153 2.72e+01 2booA 247 2.73e+01 1n0uA 842 2.80e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1xpkC 388 2.81e+01 2fliA 220 2.88e+01 1bg4 302 2.89e+01 1taxA c.1.8.3 28806 1n9lA 109 2.90e+01 d.110.3.6 85468 2gnpA 266 3.08e+01 1womA 271 3.11e+01 1jmsA 381 3.12e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1q1rA 431 3.28e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1vlmA 219 3.48e+01 c.66.1.41 108836 1cfzA 162 3.54e+01 1cfzA c.56.1.1 33754 1h4rA 314 3.64e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1dtdA 303 3.66e+01 1aye c.56.5.1 33823 1v3vA 333 3.73e+01 b.35.1.2,c.2.1.1 108345,108346 2bwnA 401 3.76e+01 1x0pA 143 3.88e+01 1d2fA 390 3.89e+01 1d2fA c.67.1.3 34411 1rypK 198 3.94e+01 d.153.1.4 41879 1d8wA 426 4.00e+01 1de5A c.1.15.2 29394 1z5rA 306 4.04e+01 1tqyB 415 4.04e+01 c.95.1.1,c.95.1.1 107247,107248 1w41A 101 4.09e+01 1imjA 210 4.12e+01 c.69.1.23 71246 1yzhA 214 4.14e+01 1v3wA 173 4.21e+01 b.81.1.5 100291 1u7nA 336 4.22e+01 c.77.1.4 107726 1m1nA 491 4.25e+01 c.92.2.3 78417 1a34A 159 4.33e+01 1a34A b.121.7.1 23286 1qw9A 502 4.43e+01 b.71.1.2,c.1.8.3 96466,96467 1pqhA 143 4.43e+01 b.52.2.1 95017 1vj1A 363 4.47e+01 b.35.1.2,c.2.1.1 100794,100795 1j0hA 588 4.49e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2cdcA 366 4.49e+01 1jhfA 202 4.53e+01 a.4.5.2,b.87.1.1 63057,63058 1a2yB 116 4.81e+01 1gc1H b.1.1.1 19927 1byfA 125 4.92e+01 1byfA d.169.1.1 42419 2a9dA 372 5.08e+01 1dywA 173 5.09e+01 2cpl b.62.1.1 27505 1reqA 727 5.09e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1ihbA 162 5.12e+01 1bd8 d.211.1.1 19161 1cf7B 95 5.15e+01 1cf7B a.4.5.17 16152 2g09A 297 5.17e+01 1f5nA 592 5.20e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1bn7A 294 5.20e+01 1bn6A c.69.1.8 34677 1woqA 267 5.39e+01 c.55.1.10,c.55.1.10 109462,109463 1o97D 320 5.48e+01 c.26.2.3,c.31.1.2 81233,81234 1yoxA 250 5.70e+01 1iruK 201 5.80e+01 d.153.1.4 71362 1xtzA 264 5.91e+01 2bo9A 308 6.07e+01 2b9hA 353 6.14e+01 1xmeA 568 6.16e+01 1dgwA 178 6.18e+01 1dgwA b.82.1.2 28090 1i9zA 347 6.23e+01 1i9yA d.151.1.2 62102 2bv5A 282 6.28e+01 2aukA 190 6.39e+01 2gjlA 328 6.59e+01 1k7cA 233 6.70e+01 c.23.10.4 68267 1zn8A 180 6.76e+01 1lnwA 147 6.83e+01 a.4.5.28 78104 1z2kA 109 6.92e+01 1n62B 809 6.99e+01 d.41.1.1,d.133.1.1 80092,80093 1kwmA 402 7.04e+01 c.56.5.1,d.58.3.1 73079,73080 1udc 338 7.04e+01 1xel c.2.1.2 29785 1o59A 355 7.06e+01 b.18.1.22,b.18.1.22 92495,92496 1b65A 375 7.14e+01 1b65A d.154.1.1 42020 1ep3A 311 7.15e+01 2dorA c.1.4.1 28597 2g9zA 348 7.20e+01 1tl9A 339 7.22e+01 1rjdA 334 7.66e+01 c.66.1.37 97558 1vgyA 393 7.82e+01 c.56.5.4,d.58.19.1 100620,100621 1j1qA 261 7.94e+01 d.165.1.1 90768 1lhpA 312 8.00e+01 c.72.1.5 77960 1vd3A 217 8.02e+01 1nulA 152 8.06e+01 1nulA c.61.1.1 34011 1ej8A 140 8.29e+01 1qupA b.1.8.1 22300 1zc6A 305 8.44e+01 1l3iA 192 8.45e+01 c.66.1.22 77676 1oxjA 173 8.50e+01 a.60.1.2,a.118.1.13 87517,87518 1e7wA 291 8.55e+01 c.2.1.2 59373 1q7sA 117 8.61e+01 c.131.1.1 96055 2ag5A 246 8.64e+01 1zsyA 357 8.65e+01 1e19A 314 8.71e+01 1b7bA c.73.1.1 34967 2b8wA 328 8.74e+01 1ig3A 263 8.75e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359 3fib 249 8.81e+01 3fib d.171.1.1 42455 1va4A 279 8.85e+01 c.69.1.12 108458 1q6oA 216 8.94e+01 c.1.2.3 95986 1m2tA 254 8.96e+01 d.165.1.1 84761