# TARGET T0303 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0303.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 29.889 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 N 0.002 0.001 0.001 0.002 0.001 0.001 0.994 2 S 0.028 0.058 0.004 0.173 0.017 0.016 0.704 3 L 0.009 0.007 0.008 0.839 0.028 0.018 0.092 4 P 0.006 0.002 0.014 0.853 0.031 0.018 0.077 5 D 0.006 0.004 0.007 0.916 0.018 0.007 0.042 6 L 0.001 0.001 0.003 0.991 0.001 0.002 0.002 7 A 0.001 0.001 0.001 0.996 0.001 0.001 0.001 8 L 0.001 0.001 0.001 0.998 0.001 0.001 0.001 9 S 0.001 0.001 0.001 0.995 0.001 0.003 0.001 10 I 0.001 0.001 0.001 0.995 0.001 0.003 0.001 11 N 0.001 0.001 0.001 0.994 0.001 0.005 0.001 12 S 0.001 0.001 0.001 0.989 0.001 0.010 0.001 13 A 0.001 0.001 0.001 0.987 0.001 0.010 0.003 14 L 0.001 0.001 0.002 0.987 0.002 0.006 0.002 15 K 0.001 0.001 0.006 0.965 0.003 0.024 0.002 16 D 0.001 0.001 0.010 0.872 0.007 0.105 0.005 17 V 0.001 0.002 0.007 0.369 0.015 0.594 0.012 18 N 0.001 0.001 0.003 0.029 0.045 0.845 0.076 19 L 0.002 0.003 0.002 0.002 0.138 0.005 0.849 20 P 0.020 0.018 0.007 0.003 0.055 0.009 0.888 21 Q 0.030 0.033 0.012 0.008 0.080 0.022 0.815 22 A 0.032 0.033 0.008 0.013 0.110 0.015 0.789 23 S 0.020 0.018 0.006 0.025 0.060 0.008 0.863 24 E 0.001 0.001 0.036 0.936 0.003 0.018 0.006 25 N 0.001 0.001 0.027 0.952 0.002 0.015 0.003 26 L 0.003 0.001 0.041 0.931 0.002 0.013 0.009 27 V 0.010 0.002 0.017 0.944 0.003 0.013 0.012 28 M 0.022 0.001 0.017 0.926 0.008 0.017 0.008 29 T 0.022 0.001 0.016 0.911 0.005 0.039 0.005 30 W 0.025 0.002 0.019 0.860 0.014 0.057 0.023 31 I 0.055 0.022 0.018 0.675 0.066 0.088 0.076 32 G 0.029 0.009 0.020 0.353 0.190 0.201 0.197 33 N 0.007 0.003 0.015 0.374 0.148 0.415 0.039 34 G 0.003 0.002 0.013 0.747 0.052 0.153 0.031 35 A 0.003 0.002 0.007 0.899 0.019 0.012 0.058 36 D 0.004 0.001 0.005 0.917 0.031 0.013 0.028 37 V 0.009 0.001 0.003 0.968 0.005 0.010 0.005 38 L 0.018 0.002 0.003 0.965 0.001 0.004 0.007 39 S 0.017 0.001 0.004 0.966 0.002 0.005 0.006 40 Q 0.017 0.001 0.006 0.955 0.006 0.009 0.008 41 R 0.023 0.001 0.008 0.917 0.006 0.027 0.018 42 A 0.018 0.002 0.014 0.881 0.010 0.042 0.033 43 V 0.015 0.005 0.027 0.829 0.027 0.055 0.042 44 D 0.010 0.002 0.032 0.810 0.020 0.092 0.035 45 W 0.005 0.003 0.041 0.708 0.044 0.145 0.054 46 A 0.006 0.004 0.038 0.462 0.075 0.292 0.124 47 C 0.013 0.006 0.056 0.330 0.134 0.220 0.241 48 T 0.025 0.007 0.076 0.373 0.177 0.092 0.249 49 Q 0.036 0.008 0.107 0.418 0.079 0.145 0.208 50 A 0.040 0.017 0.113 0.323 0.084 0.210 0.213 51 E 0.043 0.015 0.133 0.145 0.121 0.203 0.341 52 K 0.067 0.008 0.091 0.132 0.285 0.119 0.298 53 E 0.066 0.026 0.043 0.092 0.140 0.106 0.527 54 L 0.026 0.041 0.005 0.024 0.142 0.013 0.749 55 T 0.004 0.007 0.001 0.013 0.022 0.004 0.948 56 E 0.001 0.001 0.053 0.896 0.004 0.040 0.006 57 D 0.001 0.001 0.059 0.902 0.002 0.033 0.003 58 E 0.001 0.001 0.072 0.907 0.001 0.016 0.003 59 F 0.001 0.001 0.004 0.990 0.001 0.004 0.002 60 K 0.001 0.001 0.003 0.989 0.001 0.008 0.001 61 Y 0.001 0.001 0.002 0.977 0.001 0.020 0.001 62 F 0.001 0.001 0.003 0.972 0.001 0.021 0.003 63 K 0.001 0.001 0.005 0.983 0.001 0.008 0.002 64 R 0.001 0.001 0.004 0.976 0.002 0.017 0.001 65 Q 0.001 0.001 0.003 0.970 0.001 0.024 0.002 66 F 0.001 0.001 0.002 0.981 0.001 0.013 0.003 67 G 0.001 0.001 0.002 0.980 0.002 0.011 0.004 68 F 0.001 0.001 0.002 0.986 0.002 0.008 0.002 69 Y 0.001 0.001 0.003 0.982 0.002 0.009 0.003 70 Y 0.002 0.001 0.005 0.965 0.003 0.019 0.006 71 G 0.003 0.001 0.010 0.922 0.008 0.046 0.010 72 E 0.003 0.001 0.013 0.866 0.016 0.081 0.020 73 N 0.006 0.002 0.013 0.815 0.022 0.096 0.046 74 L 0.011 0.005 0.027 0.770 0.028 0.081 0.078 75 C 0.031 0.003 0.077 0.619 0.058 0.091 0.121 76 N 0.048 0.004 0.073 0.602 0.060 0.115 0.098 77 I 0.051 0.010 0.063 0.491 0.085 0.144 0.156 78 S 0.059 0.021 0.027 0.236 0.057 0.106 0.494 79 R 0.039 0.006 0.017 0.082 0.063 0.054 0.739