# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bt2A 161 1.14e-26 1fqiA 147 1.93e-26 1agrE a.91.1.1 18542 1dk8A 147 2.26e-22 1agrE a.91.1.1 18548 2a72A 146 1.58e-21 1omwA 689 2.17e-13 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1htjF 210 1.12e-05 1htjF a.91.1.1 61254 1bf5A 545 3.22e-01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1f60B 94 8.93e-01 1b64 d.58.12.1 39307 1ug3A 339 1.02e+00 1wa5B 530 1.30e+00 1uk5A 111 1.99e+00 a.7.7.1 99487 1y3nA 490 2.44e+00 1x3kA 152 2.54e+00 1ymmB 198 2.82e+00 1lopA 164 3.54e+00 2cpl b.62.1.1 27510 1ee4A 423 4.15e+00 1ee4A a.118.1.1 19128 1iapA 211 4.29e+00 a.91.1.1 62119 1h5uA 842 4.37e+00 1a8i c.87.1.4 60655 1ayl 541 4.53e+00 1ayl c.91.1.1,c.109.1.1 64718,64719 1yv5A 374 4.98e+00 1j2aA 166 5.02e+00 b.62.1.1 90779 1yq7A 374 5.71e+00 1nxuA 333 5.88e+00 c.122.1.1 86389 1s72X 92 5.97e+00 d.29.1.1 105343 1jj2W 91 6.15e+00 1ffkU d.29.1.1 63108 1a8i 842 6.17e+00 1a8i c.87.1.4 35490 2azjA 289 6.52e+00 1vzoA 355 6.75e+00 d.144.1.7 108971 1vqoX 92 7.04e+00 1aop 497 9.36e+00 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1v9tA 166 9.89e+00 b.62.1.1 108451 1k3yA 221 9.91e+00 a.45.1.1,c.47.1.5 77245,77246 2g8yA 385 1.00e+01 1ezfA 340 1.09e+01 1ezfA a.128.1.2 19440 1xx4A 261 1.11e+01 2f94F 350 1.11e+01 1n08A 163 1.17e+01 b.43.5.1 79730 2d1sA 548 1.20e+01 1tr9A 341 1.24e+01 1ir3A 306 1.25e+01 1fmk d.144.1.7 41702 1evyA 366 1.25e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1eca 136 1.30e+01 1flp a.1.1.2 15209 1hx0A 496 1.30e+01 b.71.1.1,c.1.8.1 61346,61347 1korA 400 1.40e+01 c.26.2.1,d.210.1.1 72824,72825 1ykuA 136 1.52e+01 1hv9A 456 1.59e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 1r89A 437 1.69e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1itbB 315 1.87e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1d3bB 91 1.88e+01 1d3bB b.38.1.1 24804 1pymA 295 1.93e+01 1pymA c.1.12.7 29308 1repC 251 1.97e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1zglB 192 1.98e+01 1faaA 124 2.07e+01 1erv c.47.1.1 32738 1ju2A 536 2.20e+01 c.3.1.2,d.16.1.1 77169,77170 1ngnA 155 2.21e+01 a.96.1.2 85697 1auiB 169 2.28e+01 1auiB a.39.1.5 17325 1eerB 227 2.37e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 1v7pC 200 2.44e+01 c.62.1.1 108408 1tetL 216 2.46e+01 32c2A b.1.1.1,b.1.1.2 19902,20996 1geqA 248 2.48e+01 2tysA c.1.2.4 28589 1y6nL 145 2.53e+01 1v37A 177 2.66e+01 1f2tB 148 2.82e+01 1f2tB 2bxkA 585 2.94e+01 1mp4A 292 3.07e+01 c.68.1.6 79376 1dvjA 246 3.10e+01 1dvjA c.1.2.3 28546 1f06A 320 3.18e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 2a74C 343 3.27e+01 1rhxA 87 3.28e+01 2c1dB 137 3.37e+01 1smd 496 3.39e+01 1smd b.71.1.1,c.1.8.1 27768,28755 2be4A 272 3.40e+01 2f7fA 494 3.44e+01 1qxmA 300 3.48e+01 b.42.2.1,b.42.2.1 96533,96534 2bhmA 164 3.53e+01 1h5rA 293 3.53e+01 c.68.1.6 65623 1q32A 544 3.61e+01 d.136.1.3,d.136.1.3 104507,104508 1vjqA 79 3.66e+01 k.43.1.1 100830 1ufbA 127 3.70e+01 a.24.16.3 99331 1s2wA 295 3.77e+01 c.1.12.7 98407 1ieaB 228 3.85e+01 1iakB b.1.1.2,d.19.1.1 21632,38206 1j0fA 100 3.87e+01 c.47.1.14 90739 1xwnA 174 3.89e+01 2aefA 234 3.90e+01 1psdA 409 3.91e+01 1psdA c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2ilk 160 3.99e+01 2ilk a.26.1.3 16885 2fqxA 318 4.02e+01 1s3eA 520 4.14e+01 c.3.1.2,d.16.1.5 98426,98427 1h0pA 182 4.23e+01 b.62.1.1 76450 1k0mA 241 4.23e+01 a.45.1.1,c.47.1.5 67949,67950 1umdA 367 4.24e+01 c.36.1.11 99599 1ng6A 148 4.36e+01 a.182.1.1 85670 1qjbA 245 4.39e+01 1qjaA a.118.7.1 19202 1k8kA 418 4.43e+01 c.55.1.1,c.55.1.1 68305,68306 1n46A 258 4.58e+01 a.123.1.1 85315 1qoiA 177 4.95e+01 2cpl b.62.1.1 27490 1h16A 759 5.04e+01 c.7.1.1 76462 1sc6A 404 5.08e+01 2cvzA 289 5.13e+01 1ovnA 248 5.15e+01 a.71.1.1,c.47.1.7 93602,93603 1uby 367 5.27e+01 1uby a.128.1.1 19435 2bdeA 470 5.30e+01 1jalA 363 5.38e+01 c.37.1.8,d.15.10.2 84138,84139 2ch9A 131 5.38e+01 1ehiA 377 5.39e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1ojaA 520 5.45e+01 c.3.1.2,d.16.1.5 93096,93097 1kaeA 434 5.47e+01 c.82.1.2 72247 1np3A 338 5.48e+01 a.100.1.2,c.2.1.6 85946,85947 1g94A 448 5.54e+01 b.71.1.1,c.1.8.1 65169,65170 1oi0A 124 5.56e+01 c.97.3.1 93045 1dd9A 338 5.74e+01 1dd9A e.13.1.1 43254 2gd9A 189 5.83e+01 1s5aA 150 5.92e+01 d.17.4.10 98525 1f5vA 240 5.98e+01 1bkjA d.90.1.1 40255 1v32A 101 6.05e+01 a.42.1.1 100277 1ylhA 560 6.14e+01 1zetA 388 6.16e+01 1gz6A 319 6.37e+01 c.2.1.2 76410 1v7bA 185 6.47e+01 1rxwA 336 6.50e+01 a.60.7.1,c.120.1.2 98059,98060 1i1iP 681 6.58e+01 1i1iP d.92.1.5 40297 1jqeA 292 6.58e+01 c.66.1.19 71789 1vjjA 692 6.58e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1f3aA 222 6.60e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1z1lA 345 6.62e+01 2dkaA 544 6.71e+01 1ucyH 150 6.88e+01 1ucyH 1mg7A 417 6.90e+01 d.14.1.6,d.58.26.6 84954,84955 1qb7A 236 7.00e+01 1qb7A c.61.1.1 34087 1dz3A 130 7.11e+01 1dz3A c.23.1.1 31105 1wz7A 111 7.27e+01 1pylA 97 7.31e+01 d.1.1.2 104391 1wozA 177 7.32e+01 1aqm 453 7.33e+01 1smd b.71.1.1,c.1.8.1 27717,28704 1w85A 368 7.40e+01 1th0A 226 7.47e+01 d.3.1.7 106903 2cr5A 109 7.47e+01 1t1vA 93 7.51e+01 c.47.1.14 106278 2ac5A 316 7.51e+01 2ac3A 316 7.57e+01 1rfmA 344 7.62e+01 c.122.1.1 97385 1mzhA 225 7.62e+01 c.1.10.1 79698 1pg4A 652 7.69e+01 e.23.1.1 88067 1vjtA 483 7.69e+01 c.2.1.5,d.162.1.2 100833,100834 1hm9A 468 7.82e+01 b.81.1.4,c.68.1.5 65866,65867 1f74A 293 7.88e+01 1nal3 c.1.10.1 29079 1zip 217 7.93e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1yyqA 374 7.94e+01 1vl8A 267 8.03e+01 c.2.1.2 108733 1zin 217 8.12e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1cy9A 264 8.14e+01 1ecl e.10.1.1 43236 2aelA 374 8.22e+01 1lw7A 365 8.22e+01 c.26.1.3,c.37.1.1 74295,74296 1m4iA 181 8.28e+01 d.108.1.1 74457 1ualA 274 8.33e+01 c.116.1.4 88383 1bkjA 240 8.36e+01 1bkjA d.90.1.1 40243 1g8iA 190 8.52e+01 1rec a.39.1.5 60363 1nu0A 138 8.54e+01 c.55.3.8 92165 1jkvA 266 8.55e+01 a.25.1.3 71719 1zbqA 327 8.66e+01 1ikpA 613 8.77e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1jx4A 352 8.79e+01 d.240.1.1,e.8.1.7 90378,90379 2av9A 147 8.81e+01 1keyA 235 8.83e+01 a.118.16.1 72389 1dx5I 118 8.87e+01 1dx5I g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 1yozA 116 8.87e+01