# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 1.17e-06 1gqzA 274 2.37e-06 d.21.1.1,d.21.1.1 83311,83312 1bwzA 274 3.82e-06 1bwzA d.21.1.1,d.21.1.1 38337,38338 1w61A 414 4.50e-05 1tm0A 350 3.06e-02 d.21.1.3 107147 1sdjA 310 1.57e-01 d.21.1.2,d.21.1.2 98807,98808 1u1wA 298 2.81e-01 1t6kA 278 4.33e-01 1qyaA 307 4.97e-01 d.21.1.2,d.21.1.2 104653,104654 1xubA 298 1.20e+00 2b3nA 159 1.70e+00 1ym5A 300 1.88e+00 2azpA 318 2.45e+00 1pzgA 331 2.51e+00 c.2.1.5,d.162.1.1 95425,95426 1oe4A 247 3.53e+00 c.18.1.3 86895 1m6eX 359 7.66e+00 c.66.1.35 91188 1y8aA 332 8.39e+00 1ryaA 160 9.69e+00 d.113.1.5 105122 3lriA 83 1.07e+01 1zeiA g.1.1.1 43995 2fbeA 201 1.08e+01 1a8z 153 1.15e+01 1rcy b.6.1.1 23020 1vjzA 341 1.16e+01 c.1.8.3 100838 1h21A 247 1.30e+01 a.138.1.3 76510 2cr4A 126 1.32e+01 1w7lA 422 1.35e+01 c.67.1.1 109226 1hzdA 272 1.64e+01 c.14.1.3 65969 1vknA 351 1.65e+01 c.2.1.3,d.81.1.1 108676,108677 2calA 154 1.89e+01 2g6yA 217 1.95e+01 1jc7A 131 2.02e+01 1jc7A b.40.3.2 62873 1otkA 249 2.18e+01 a.25.1.2 93521 1ak0 270 2.31e+01 1ak0 a.124.1.2 19345 1kkoA 413 2.38e+01 c.1.11.2,d.54.1.1 68675,68676 1izmA 184 2.48e+01 a.199.1.1 90725 1jj2F 119 2.49e+01 1ffkE d.79.3.1 63091 1s5jA 847 2.50e+01 1jb3A 131 2.55e+01 1jc7A b.40.3.2 62833 1e30A 155 2.57e+01 1rcy b.6.1.1 23016 1wbpA 397 2.68e+01 1g55A 343 2.72e+01 1g55A c.66.1.26 34247 1tw9A 206 2.84e+01 a.45.1.1,c.47.1.5 107381,107382 1yzhA 214 3.04e+01 1ep2B 261 3.15e+01 1ep2B b.43.4.2,c.25.1.3 25666,31556 2a4hA 126 3.35e+01 1bpv 112 3.35e+01 1bpv b.1.2.1 22071 1nc5A 373 3.38e+01 a.102.1.6 85548 1hg3A 225 3.51e+01 1hg3A c.1.1.1 61025 1d0iA 156 3.52e+01 2dhqA c.23.13.1 31383 1rcy 151 3.70e+01 1rcy b.6.1.1 23018 1ka6A 128 3.77e+01 d.93.1.1 68370 1lox 662 3.93e+01 1lox a.119.1.2,b.12.1.1 19238,23638 1x1nA 524 4.05e+01 1kte 105 4.27e+01 1kte c.47.1.1 32771 1y0gA 191 4.30e+01 1c0eA 157 4.33e+01 1dg9A c.44.1.1 32638 1oi6A 205 4.40e+01 b.82.1.1 103940 1ofnA 205 4.46e+01 b.82.1.1 92830 1ffkE 119 4.50e+01 1ffkE d.79.3.1 39812 1b4qA 105 5.08e+01 1kte c.47.1.1 32773 1jhb 106 5.24e+01 1kte c.47.1.1 32772 1souA 194 5.26e+01 c.124.1.6 105858 1mkeA 152 5.46e+01 b.55.1.4 79231 1ass 159 5.58e+01 1a6dA c.8.5.2 30818 1u5kA 244 5.61e+01 1vljA 407 5.82e+01 e.22.1.2 108832 1gvfA 286 5.86e+01 c.1.10.2 70599 1ixlA 131 6.00e+01 d.38.1.5 90717 1cur 155 6.01e+01 1rcy b.6.1.1 23021 1a3z 155 6.08e+01 1rcy b.6.1.1 23019 1asx 159 6.21e+01 1a6dA c.8.5.2 30821 1yn9A 169 6.38e+01 1s7jA 262 6.40e+01 d.21.1.2 98647 1cne 270 6.53e+01 1ndh b.43.4.2,c.25.1.1 25661,31551 1k8kE 178 6.70e+01 a.148.1.1 68311 1up8A 598 6.75e+01 a.111.1.2 99710 1xzpB 150 6.76e+01 1ycdA 243 6.78e+01 1cb0A 283 6.85e+01 1cb0A c.56.2.1 33790 1iapA 211 6.88e+01 a.91.1.1 62119 1lci 550 7.36e+01 1lci e.23.1.1 43349 2g7zA 282 7.39e+01 1xikA 375 7.55e+01 1xikA a.25.1.2 16784 1cauB 184 7.61e+01 1caxB b.82.1.2 28103 2awaA 390 7.81e+01 1gtzA 156 7.88e+01 c.23.13.1 70539 2fp4B 395 8.04e+01 1n25A 368 8.14e+01 c.37.1.20 85264 2bnmA 198 8.38e+01 2a6tA 271 8.50e+01 1zxxA 319 8.64e+01 1caxB 184 8.69e+01 1caxB b.82.1.2 28105 16pk 415 8.93e+01 16pk c.86.1.1 35454 1rreA 200 8.98e+01 d.14.1.10 97791 1svmA 377 8.98e+01