# TARGET T0300 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t1c2-str2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0300.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.03554 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.013 0.417 0.003 0.081 0.094 0.001 0.001 0.005 0.111 0.257 0.006 0.011 2 A 0.001 0.029 0.490 0.001 0.065 0.044 0.001 0.001 0.006 0.180 0.160 0.004 0.019 3 S 0.001 0.027 0.573 0.001 0.022 0.025 0.001 0.001 0.005 0.201 0.124 0.018 0.005 4 K 0.001 0.021 0.686 0.001 0.016 0.010 0.001 0.001 0.002 0.076 0.177 0.001 0.011 5 K 0.001 0.005 0.830 0.001 0.011 0.009 0.001 0.001 0.002 0.118 0.022 0.002 0.001 6 P 0.001 0.013 0.577 0.001 0.036 0.034 0.001 0.001 0.002 0.112 0.223 0.001 0.001 7 D 0.001 0.015 0.288 0.001 0.073 0.026 0.001 0.001 0.005 0.115 0.473 0.001 0.002 8 K 0.001 0.013 0.535 0.001 0.008 0.021 0.001 0.001 0.004 0.394 0.021 0.002 0.001 9 T 0.001 0.041 0.777 0.001 0.004 0.046 0.001 0.001 0.002 0.117 0.008 0.001 0.004 10 Y 0.001 0.002 0.029 0.001 0.005 0.951 0.001 0.001 0.001 0.005 0.008 0.001 0.001 11 E 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 12 E 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 M 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 K 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 16 E 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.006 0.001 0.001 17 V 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.006 0.001 0.001 18 E 0.001 0.001 0.001 0.001 0.003 0.975 0.001 0.001 0.001 0.001 0.021 0.001 0.001 19 R 0.001 0.001 0.002 0.001 0.003 0.944 0.001 0.001 0.001 0.002 0.048 0.001 0.001 20 L 0.001 0.001 0.015 0.001 0.004 0.955 0.001 0.001 0.001 0.004 0.023 0.001 0.001 21 K 0.001 0.001 0.034 0.001 0.006 0.911 0.001 0.001 0.001 0.012 0.035 0.001 0.001 22 L 0.001 0.001 0.029 0.001 0.011 0.929 0.001 0.001 0.001 0.006 0.022 0.001 0.001 23 E 0.001 0.001 0.017 0.001 0.010 0.956 0.001 0.001 0.001 0.004 0.011 0.001 0.001 24 N 0.001 0.001 0.025 0.001 0.004 0.948 0.001 0.001 0.001 0.005 0.017 0.001 0.001 25 K 0.001 0.001 0.013 0.001 0.005 0.941 0.001 0.001 0.001 0.003 0.037 0.001 0.001 26 T 0.001 0.001 0.020 0.001 0.003 0.948 0.001 0.001 0.001 0.005 0.021 0.001 0.001 27 L 0.001 0.001 0.023 0.001 0.003 0.956 0.001 0.001 0.001 0.006 0.009 0.001 0.001 28 K 0.001 0.001 0.008 0.001 0.002 0.981 0.001 0.001 0.001 0.002 0.005 0.001 0.001 29 Q 0.001 0.001 0.001 0.001 0.003 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 30 K 0.001 0.001 0.001 0.001 0.003 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 31 V 0.001 0.001 0.004 0.001 0.005 0.975 0.001 0.001 0.002 0.002 0.010 0.001 0.001 32 K 0.001 0.003 0.015 0.001 0.010 0.892 0.001 0.001 0.002 0.006 0.067 0.001 0.002 33 S 0.001 0.008 0.057 0.001 0.017 0.539 0.001 0.002 0.004 0.055 0.308 0.003 0.006 34 S 0.001 0.007 0.203 0.001 0.026 0.133 0.001 0.001 0.003 0.101 0.521 0.002 0.002 35 G 0.001 0.008 0.289 0.001 0.038 0.038 0.001 0.001 0.002 0.181 0.437 0.002 0.005 36 A 0.001 0.037 0.423 0.002 0.044 0.024 0.001 0.001 0.004 0.212 0.225 0.016 0.013 37 V 0.001 0.048 0.469 0.001 0.022 0.015 0.001 0.001 0.011 0.214 0.183 0.006 0.028 38 S 0.001 0.011 0.651 0.001 0.007 0.006 0.001 0.001 0.005 0.259 0.053 0.003 0.003 39 S 0.001 0.014 0.410 0.001 0.024 0.018 0.001 0.001 0.001 0.368 0.159 0.001 0.003 40 D 0.001 0.030 0.502 0.002 0.054 0.030 0.001 0.001 0.002 0.224 0.152 0.002 0.003 41 D 0.001 0.026 0.393 0.002 0.236 0.086 0.001 0.001 0.002 0.103 0.141 0.002 0.009 42 S 0.001 0.026 0.285 0.004 0.194 0.108 0.001 0.001 0.005 0.098 0.247 0.024 0.007 43 I 0.003 0.045 0.241 0.001 0.160 0.067 0.002 0.002 0.009 0.109 0.308 0.008 0.044 44 L 0.001 0.061 0.386 0.001 0.027 0.080 0.001 0.001 0.009 0.271 0.138 0.015 0.010 45 T 0.001 0.006 0.778 0.001 0.003 0.029 0.001 0.001 0.002 0.158 0.016 0.002 0.005 46 A 0.001 0.001 0.158 0.001 0.025 0.610 0.001 0.001 0.001 0.111 0.092 0.001 0.001 47 A 0.001 0.002 0.046 0.001 0.018 0.839 0.001 0.001 0.001 0.033 0.061 0.001 0.001 48 K 0.001 0.001 0.010 0.001 0.007 0.967 0.001 0.001 0.001 0.003 0.011 0.001 0.002 49 R 0.001 0.001 0.003 0.001 0.001 0.987 0.001 0.001 0.001 0.002 0.005 0.001 0.001 50 E 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 51 S 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 52 I 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 53 I 0.001 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.005 0.001 0.001 54 V 0.001 0.001 0.004 0.001 0.001 0.976 0.001 0.001 0.001 0.002 0.015 0.001 0.001 55 S 0.001 0.001 0.012 0.001 0.002 0.944 0.001 0.001 0.002 0.006 0.026 0.002 0.002 56 S 0.001 0.001 0.007 0.001 0.006 0.955 0.001 0.001 0.001 0.006 0.024 0.001 0.001 57 S 0.001 0.001 0.004 0.001 0.008 0.968 0.001 0.001 0.001 0.002 0.017 0.001 0.001 58 R 0.001 0.001 0.002 0.001 0.010 0.967 0.001 0.001 0.001 0.001 0.020 0.001 0.001 59 A 0.001 0.001 0.004 0.001 0.011 0.961 0.001 0.001 0.001 0.002 0.022 0.001 0.001 60 L 0.001 0.001 0.007 0.001 0.008 0.967 0.001 0.001 0.001 0.003 0.015 0.001 0.001 61 G 0.001 0.001 0.023 0.001 0.002 0.961 0.001 0.001 0.001 0.005 0.008 0.001 0.001 62 A 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 63 V 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 64 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 65 M 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 R 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 K 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 68 I 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 69 E 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 A 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 71 K 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.009 0.001 0.001 72 V 0.001 0.001 0.007 0.001 0.002 0.977 0.001 0.001 0.001 0.002 0.010 0.001 0.001 73 R 0.001 0.006 0.029 0.001 0.014 0.909 0.001 0.001 0.001 0.012 0.027 0.001 0.001 74 S 0.001 0.001 0.024 0.001 0.034 0.833 0.001 0.001 0.001 0.013 0.088 0.001 0.004 75 R 0.001 0.006 0.049 0.001 0.040 0.681 0.001 0.002 0.001 0.037 0.178 0.002 0.002 76 A 0.001 0.009 0.310 0.001 0.064 0.447 0.001 0.001 0.009 0.072 0.082 0.001 0.005 77 A 0.001 0.004 0.143 0.006 0.203 0.284 0.001 0.001 0.004 0.095 0.258 0.001 0.001 78 K 0.001 0.003 0.090 0.001 0.188 0.201 0.001 0.003 0.012 0.107 0.391 0.002 0.001 79 A 0.002 0.022 0.277 0.001 0.155 0.139 0.006 0.019 0.162 0.095 0.084 0.001 0.037 80 V 0.003 0.095 0.324 0.001 0.018 0.099 0.009 0.007 0.099 0.233 0.030 0.078 0.005 81 T 0.001 0.045 0.586 0.001 0.015 0.097 0.001 0.002 0.050 0.155 0.018 0.001 0.030 82 E 0.001 0.001 0.044 0.001 0.064 0.832 0.001 0.001 0.002 0.014 0.042 0.001 0.001 83 Q 0.001 0.001 0.005 0.001 0.088 0.866 0.001 0.001 0.001 0.003 0.038 0.001 0.001 84 E 0.001 0.001 0.008 0.001 0.050 0.924 0.001 0.001 0.001 0.003 0.014 0.001 0.001 85 L 0.001 0.001 0.003 0.001 0.012 0.975 0.001 0.001 0.001 0.001 0.007 0.001 0.001 86 T 0.001 0.001 0.001 0.001 0.005 0.980 0.001 0.001 0.001 0.001 0.013 0.001 0.001 87 S 0.001 0.001 0.002 0.001 0.025 0.938 0.001 0.001 0.001 0.002 0.032 0.001 0.001 88 L 0.001 0.001 0.003 0.001 0.026 0.930 0.001 0.001 0.001 0.003 0.037 0.001 0.001 89 L 0.001 0.002 0.012 0.001 0.102 0.811 0.001 0.001 0.001 0.013 0.059 0.001 0.001 90 Q 0.001 0.001 0.008 0.001 0.095 0.633 0.001 0.001 0.001 0.012 0.250 0.001 0.001 91 S 0.002 0.002 0.085 0.001 0.081 0.225 0.001 0.001 0.001 0.031 0.566 0.002 0.003 92 L 0.011 0.006 0.592 0.001 0.023 0.072 0.003 0.004 0.091 0.107 0.075 0.006 0.011 93 T 0.034 0.023 0.250 0.039 0.010 0.019 0.012 0.008 0.183 0.284 0.057 0.056 0.025 94 L 0.055 0.005 0.153 0.018 0.006 0.006 0.028 0.050 0.445 0.044 0.022 0.071 0.097 95 R 0.122 0.004 0.083 0.029 0.003 0.002 0.106 0.094 0.336 0.013 0.005 0.060 0.144 96 V 0.109 0.003 0.034 0.005 0.001 0.001 0.157 0.143 0.314 0.003 0.003 0.136 0.092 97 D 0.118 0.007 0.069 0.017 0.002 0.001 0.131 0.062 0.364 0.033 0.011 0.074 0.112 98 V 0.016 0.022 0.352 0.006 0.004 0.002 0.030 0.019 0.374 0.051 0.008 0.051 0.067 99 S 0.003 0.017 0.682 0.004 0.005 0.003 0.004 0.002 0.094 0.064 0.024 0.023 0.075 100 M 0.001 0.019 0.336 0.004 0.057 0.033 0.002 0.002 0.015 0.189 0.324 0.005 0.014 101 E 0.001 0.015 0.261 0.003 0.042 0.038 0.001 0.001 0.004 0.299 0.330 0.003 0.004 102 E 0.001 0.007 0.530 0.001 0.048 0.035 0.001 0.001 0.002 0.313 0.058 0.002 0.004