# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1z9bA 135 1.34e+00 1hbxA 92 1.44e+00 1mnmA d.88.1.1 60930 1debA 54 3.02e+00 1debA h.1.18.1 45660 2cw9A 194 5.72e+00 1jeqA 609 7.61e+00 1jeqA a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 1mvwB 145 7.78e+00 i.15.1.1 79524 1wt4A 73 8.07e+00 1uz3A 102 8.55e+00 1lj2A 110 8.91e+00 h.1.13.2 73926 1zw0A 66 9.06e+00 1q77A 138 9.48e+00 c.26.2.4 96023 1ystH 260 9.57e+00 6prcH b.41.1.1,f.23.10.1 25482,43511 1go4E 100 1.01e+01 h.1.22.1 70296 1j8bA 112 1.02e+01 d.222.1.1 77101 1yhnB 65 1.03e+01 1i6zA 135 1.05e+01 a.7.7.1 61861 1gotB 340 1.11e+01 1tbgA b.69.4.1 27648 1a0rB 340 1.13e+01 1tbgA b.69.4.1 27658 1tmzA 32 1.14e+01 1tmzA k.1.1.1 46376 1yruB 74 1.18e+01 1h4xA 117 1.27e+01 1auz c.13.2.1 60626 1hqvA 191 1.31e+01 1hqvA a.39.1.8 61160 1aijH 260 1.32e+01 6prcH b.41.1.1,f.23.10.1 25466,43463 1qovH 260 1.35e+01 6prcH b.41.1.1,f.23.10.1 25464,43457 1ab4 477 1.45e+01 1ab4 e.11.1.1 43251 1tbgE 68 1.51e+01 1tbgE a.137.3.1 19630 1hx1B 114 1.54e+01 1hx1B a.7.7.1 61350 102l 165 1.54e+01 1l92 d.2.1.3 36724 1utuA 108 1.55e+01 1j7nA 776 1.61e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 2bm8A 236 1.68e+01 2cruA 118 1.70e+01 1m4iA 181 1.71e+01 d.108.1.1 74457 1rzhH 260 1.76e+01 b.41.1.1,f.23.10.1 98162,98163 2aw4Z 70 1.78e+01 1tbgA 340 1.78e+01 1tbgA b.69.4.1 27649 1p4wA 99 1.80e+01 a.4.6.2 87783 1qryA 80 1.85e+01 2hddA a.4.1.1 16016 2mysB 166 1.87e+01 1wdcB a.39.1.5 17308 2bcjB 340 1.89e+01 1a0rG 65 1.97e+01 1tbgE a.137.3.1 19639 1mli 96 2.03e+01 1mli d.58.4.1 39070 1fmhA 33 2.09e+01 1fmhB k.6.1.1 46409 1sf9A 128 2.11e+01 b.34.15.1 98831 1ry3A 64 2.12e+01 j.106.1.1 98084 1b9xB 68 2.19e+01 1tbgE a.137.3.1 19638 1ce9A 34 2.25e+01 1ce9C h.1.3.1 45483 1ce9C 34 2.25e+01 1ce9C h.1.3.1 45485 1zhcA 76 2.26e+01 1v54J 59 2.30e+01 f.23.4.1 100331 1mwmA 320 2.32e+01 c.55.1.1,c.55.1.1 79580,79581 1xeqA 103 2.32e+01 104lA 166 2.36e+01 1l92 d.2.1.3 36969 1dh3A 55 2.43e+01 1a02J h.1.3.1 45546 2occJ 59 2.51e+01 2occJ f.23.4.1 43524 1e7tA 59 2.61e+01 1eq7A 56 2.64e+01 1eq7A h.1.16.1 45655 1d4bA 122 2.78e+01 1d4bA d.15.2.1 37638 1mhyB 395 2.81e+01 1mtyB a.25.1.2 16781 1b5sA 242 3.00e+01 1eaf c.43.1.1 32626 1fmhB 33 3.04e+01 1fmhB k.6.1.1 46410 1xbl 107 3.09e+01 1bqz a.2.3.1 15697 1htmB 138 3.10e+01 1htmB h.3.1.1 45677 1allA 160 3.12e+01 1qgwC a.1.1.3 15647 1ihqA 38 3.19e+01 k.31.1.1 66144 1egwA 77 3.19e+01 1mnmA d.88.1.1 40234 1wjpA 107 3.19e+01 1zjkA 403 3.21e+01 1aj4 161 3.28e+01 1ncx a.39.1.5 17244 2ercA 244 3.29e+01 2ercA c.66.1.24 34224 1hr0W 71 3.44e+01 1ah9 b.40.4.5 25329 1v7bA 185 3.47e+01 1lzjA 292 3.59e+01 c.68.1.9 74352 1ftt 68 3.63e+01 2hddA a.4.1.1 15997 1sedA 117 3.68e+01 a.219.1.1 105449 1dovA 181 3.71e+01 1dovA a.24.9.1 16627 2a9fA 398 3.74e+01 2bj7A 138 3.75e+01 1i4vA 115 3.86e+01 1umuA b.87.1.1 61734 1ngmB 72 4.00e+01 j.104.1.1 85687 109l 164 4.12e+01 1l92 d.2.1.3 36781 1ci6B 63 4.13e+01 1ci6B h.1.3.1 45549 1gnc 178 4.20e+01 1bgc a.26.1.1 16821 1q2fA 32 4.30e+01 j.69.1.1 95627 1ifl 53 4.32e+01 1ifi h.1.4.1 45566 2gboA 104 4.33e+01 1aym3 238 4.35e+01 1aym3 1q1vA 70 4.35e+01 a.159.4.1 104479 1t6fA 37 4.38e+01 h.1.28.1 106565 2mev4 70 4.38e+01 2mev4 2occF 98 4.40e+01 2occF g.41.5.3 45256 1envA 123 4.45e+01 1envA h.3.2.1 45726 1p94A 76 4.48e+01 a.43.1.3 94380 113l 164 4.48e+01 1l92 d.2.1.3 36678 103l 167 4.54e+01 1l92 d.2.1.3 36870 1b1gA 75 4.56e+01 1psrA a.39.1.1 17151 191l 164 4.62e+01 1l92 d.2.1.3 36826 1dd3A 128 4.67e+01 1dd3C a.108.1.1,d.45.1.1 19031,38760 1v54F 98 4.67e+01 g.41.5.3 100327 1whzA 70 4.75e+01 1t3jA 96 4.76e+01 h.4.16.1 106356 1b35B 255 4.76e+01 1b35B b.121.4.1 23334 1osa 148 4.77e+01 1cll a.39.1.5 17300 1sb2A 133 4.79e+01 1zchA 255 4.80e+01 189l 164 4.81e+01 1l92 d.2.1.3 36960 149l 164 4.85e+01 1l92 d.2.1.3 36959 2fbwC 141 4.88e+01 112l 164 4.93e+01 1l92 d.2.1.3 36677 2d27A 149 4.95e+01 175lA 164 4.98e+01 1l92 d.2.1.3 36924 1ybxA 143 4.99e+01 1exrA 148 5.04e+01 1cll a.39.1.5 17299 1qysA 106 5.04e+01 k.41.1.1 96603 196l 164 5.07e+01 1l92 d.2.1.3 36927 145l 164 5.10e+01 1l92 d.2.1.3 36860 1ku1A 230 5.24e+01 a.118.3.1 72996 190l 164 5.36e+01 1l92 d.2.1.3 36892 120l 164 5.45e+01 1l92 d.2.1.3 36720 1r5iD 216 5.45e+01 a.202.1.1 97091 167lA 164 5.51e+01 1l92 d.2.1.3 36937 1kddA 36 5.56e+01 h.1.3.1 68472 1j7nB 776 5.75e+01 d.92.1.14,d.92.1.14,d.166.1.1 66412,66413,66414 119l 164 5.81e+01 1l92 d.2.1.3 36622 2a6cA 83 5.87e+01 122l 164 5.89e+01 1l92 d.2.1.3 36667 163l 164 5.97e+01 1l92 d.2.1.3 36658 114l 164 5.99e+01 1l92 d.2.1.3 36663 160l 164 6.05e+01 1l92 d.2.1.3 36748 1g7nA 131 6.05e+01 b.60.1.2 83274 107l 164 6.09e+01 1l92 d.2.1.3 36690 177l 164 6.09e+01 1l92 d.2.1.3 36958 1y0vH 146 6.12e+01 118l 164 6.15e+01 1l92 d.2.1.3 36642 125l 164 6.17e+01 1l92 d.2.1.3 36672 168lA 164 6.18e+01 1l92 d.2.1.3 36975 2ghpA 292 6.18e+01 1wmiB 67 6.19e+01 111l 164 6.21e+01 1l92 d.2.1.3 36661 1fc4A 401 6.23e+01 1bs0A c.67.1.4 59760 1vdiA 52 6.24e+01 1p36A 164 6.28e+01 d.2.1.3 93978 1qu1A 155 6.34e+01 1qu1A h.3.1.1 45670 129l 164 6.36e+01 1l92 d.2.1.3 36660 157l 164 6.38e+01 1l92 d.2.1.3 36717 128l 164 6.38e+01 1l92 d.2.1.3 36634 2ahmE 203 6.38e+01 1l92 164 6.40e+01 1l92 d.2.1.3 36629 127l 164 6.47e+01 d.2.1.3 36745 1lw9A 164 6.50e+01 d.2.1.3 84727 2cb5A 453 6.52e+01 3gcb d.3.1.1 37035 1ggzA 148 6.53e+01 a.39.1.5 70176 1bl3A 160 6.55e+01 1b9dA c.55.3.2 33655 197l 164 6.57e+01 1l92 d.2.1.3 36911 158l 164 6.60e+01 1l92 d.2.1.3 36747 159l 164 6.62e+01 1l92 d.2.1.3 36682 195l 164 6.65e+01 1l92 d.2.1.3 36841 110l 164 6.69e+01 1l92 d.2.1.3 36684 199l 164 6.70e+01 1l92 d.2.1.3 36855 1ijcA 63 6.80e+01 g.7.1.1 66154 165l 164 6.82e+01 1l92 d.2.1.3 36680 162l 164 6.87e+01 1l92 d.2.1.3 36749 1ziiA 34 6.92e+01 2ztaA h.1.3.1 45479 1keyA 235 6.93e+01 a.118.16.1 72389 138l 164 6.98e+01 1l92 d.2.1.3 36679 130l 164 7.06e+01 1l92 d.2.1.3 36638 1sx7A 164 7.09e+01 176lA 164 7.10e+01 1l92 d.2.1.3 36942 1j1jA 240 7.15e+01 a.118.16.1 90762 1ds6B 180 7.19e+01 1rhoA b.1.18.8 21898 180lA 164 7.22e+01 1l92 d.2.1.3 36867 123l 164 7.28e+01 1l92 d.2.1.3 36697 126l 164 7.28e+01 1l92 d.2.1.3 36699 146l 164 7.28e+01 1l92 d.2.1.3 36763 140l 164 7.31e+01 1l92 d.2.1.3 36891 198l 164 7.31e+01 1l92 d.2.1.3 36785 155l 164 7.31e+01 1l92 d.2.1.3 36762 174lA 164 7.32e+01 1l92 d.2.1.3 36956 131l 164 7.32e+01 1l92 d.2.1.3 36685 147l 164 7.37e+01 1l92 d.2.1.3 36864 142l 164 7.39e+01 1l92 d.2.1.3 36874 1x75A 132 7.42e+01 108l 164 7.43e+01 1l92 d.2.1.3 36669 1swyA 164 7.44e+01 1adl 131 7.44e+01 1hmt b.60.1.2 27186 1b35D 57 7.45e+01 1b35D b.121.4.1 83038 139l 164 7.46e+01 1l92 d.2.1.3 36643 2ztaA 34 7.46e+01 2ztaA h.1.3.1 45474 1mnmA 100 7.67e+01 1mnmA d.88.1.1 40232 161l 164 7.74e+01 1l92 d.2.1.3 36636 1xfxO 149 7.77e+01 1ppjE 196 7.82e+01 b.33.1.1,f.23.12.1 104260,104261 1th0A 226 7.87e+01 d.3.1.7 106903 1mknA 59 7.94e+01 1mknA g.5.1.1 44383 1bq0 103 7.94e+01 1bqz a.2.3.1 15698 1kbaA 66 8.00e+01 3ebx g.7.1.1 44431 192l 164 8.03e+01 1l92 d.2.1.3 36815 2f05A 105 8.05e+01 164l 164 8.05e+01 1l92 d.2.1.3 36714 1kd9A 36 8.05e+01 h.1.3.1 68466 1a93B 34 8.11e+01 1a93B h.1.3.1 45545 115l 164 8.13e+01 1l92 d.2.1.3 36700 141l 164 8.16e+01 1l92 d.2.1.3 36863 156l 164 8.20e+01 1l92 d.2.1.3 36709 172l 164 8.22e+01 1l92 d.2.1.3 36905 1jsdB 176 8.51e+01 h.3.1.1 63259 1dvoA 152 8.53e+01 1dvoA a.136.1.1 19623 1b6iA 164 8.54e+01 1l92 d.2.1.3 36945 143l 164 8.55e+01 1l92 d.2.1.3 36857 166l 164 8.56e+01 1l92 d.2.1.3 36681 1p9iA 31 8.72e+01 h.1.10.1 94390 1kmiZ 214 8.74e+01 h.4.11.1 72752 1c7uA 85 8.76e+01 1mnmA d.88.1.1 40238 2bjnA 160 8.87e+01 2hntE 81 8.89e+01 1ucyH 171l 164 8.99e+01 1l92 d.2.1.3 36962