# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jmxB 349 2.49e+00 b.69.2.2 66906 2b06A 155 3.29e+00 1nmeA 146 3.74e+00 c.17.1.1 85874 1sg6A 393 4.32e+00 e.22.1.1 105522 1w0mA 226 6.31e+00 c.1.1.1 109027 1amuA 563 6.41e+00 1amuA e.23.1.1 43351 1kafA 108 7.35e+00 d.199.1.1 68372 1x38A 602 9.18e+00 1dzkA 157 1.02e+01 1obpA b.60.1.1 27096 2cu3A 64 1.15e+01 1sflA 238 1.21e+01 1oz9A 150 1.23e+01 d.92.1.15 93808 1pbyB 337 1.28e+01 b.69.2.2 94422 1qy1A 174 1.29e+01 b.60.1.1 96568 2ghpA 292 1.36e+01 2gfsA 372 1.38e+01 1ixh 321 1.48e+01 1ixh c.94.1.1 35761 1zndA 174 1.48e+01 1vizA 240 1.55e+01 c.1.4.1 100784 2bkaA 242 1.55e+01 2c0nA 203 1.70e+01 1tuzA 118 1.70e+01 1exbA 332 1.71e+01 1qrqA c.1.7.1 28666 1o50A 157 1.76e+01 d.37.1.1,d.37.1.1 92478,92479 1jubA 311 1.84e+01 c.1.4.1 90908 1xr4A 509 1.86e+01 1sdjA 310 1.99e+01 d.21.1.2,d.21.1.2 98807,98808 1fs5A 266 2.01e+01 c.124.1.1 65044 1wwkA 307 2.08e+01 1qyaA 307 2.18e+01 d.21.1.2,d.21.1.2 104653,104654 1fsgA 233 2.25e+01 1qk3A c.61.1.1 34029 1tv8A 340 2.31e+01 c.1.28.3 107352 1wi6A 88 2.35e+01 1n3kA 130 2.44e+01 a.77.1.4 79965 1ltzA 297 2.56e+01 d.178.1.1 74254 1jhjA 171 2.59e+01 b.18.1.9 66714 1dhkB 223 2.63e+01 1led b.29.1.1 24157 1aua 296 2.68e+01 1aua a.5.3.1,c.13.1.1 16290,30882 2arhA 203 2.79e+01 1qtnA 164 2.80e+01 1pauA c.17.1.1 30999 1ywnA 316 2.91e+01 1mxmA 254 2.99e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1o13A 136 3.03e+01 c.55.5.1 80762 1pjcA 361 3.11e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1iukA 140 3.17e+01 c.2.1.8 83712 1e6yA 569 3.19e+01 1mroA a.89.1.1,d.58.31.2 18529,39447 1z83A 196 3.26e+01 1xneA 113 3.27e+01 1ykiA 217 3.28e+01 1qdeA 224 3.42e+01 1qvaA c.37.1.19 32410 1ne7A 289 3.56e+01 c.124.1.1 91833 1aky 221 3.65e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1z41A 338 3.71e+01 2f9dA 125 3.72e+01 1ro2A 216 3.85e+01 d.264.1.2 97665 2afwA 329 4.08e+01 1q1fA 151 4.10e+01 a.1.1.2 104476 1wmiA 90 4.18e+01 1go4A 205 4.31e+01 d.135.1.1 70292 1t0iA 191 4.34e+01 c.23.5.4 106209 1cs0A 1073 4.37e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1a9xA 1058 4.43e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1zkdA 387 4.52e+01 1u04A 771 4.60e+01 b.34.14.1,c.55.3.10 107539,107540 1jb9A 316 4.91e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1ro0A 216 4.91e+01 d.264.1.2 97664 1rutX 188 4.97e+01 1kn6A 90 5.31e+01 d.58.3.3 72770 1ev7A 317 5.36e+01 1ev7B c.52.1.9 33315 1sdoA 203 5.39e+01 c.52.1.21 98809 1fcdA 401 5.66e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1gw5A 621 5.73e+01 a.118.1.10 70629 1f6yA 262 5.80e+01 1f6yA c.1.21.2 29673 1zsxA 347 5.90e+01 1g94A 448 5.96e+01 b.71.1.1,c.1.8.1 65169,65170 1jtvA 327 6.01e+01 c.2.1.2 84230 1mkyA 439 6.01e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2bjvA 265 6.17e+01 2gw6A 123 6.23e+01 1e0tA 470 6.23e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 3psg 370 6.31e+01 1smrA b.50.1.2 26841 1mzyA 333 6.38e+01 b.6.1.3,b.6.1.3 103848,103849 1ehyA 294 6.60e+01 1ehyA c.69.1.11 34693 1k2xB 143 6.63e+01 1jakA 512 6.80e+01 c.1.8.6,d.92.2.1 66472,66473 1zud2 66 6.84e+01 1va4A 279 6.94e+01 c.69.1.12 108458 1s1qA 145 6.97e+01 d.20.1.2 98351 1khtA 192 7.11e+01 c.37.1.1 84401 1e8gA 560 7.11e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1zdyA 307 7.13e+01 1j98A 157 7.18e+01 1j98A d.185.1.2 62755 1qwgA 251 7.27e+01 c.1.27.1 96473 1v3vA 333 7.42e+01 b.35.1.2,c.2.1.1 108345,108346 1v5iB 76 7.56e+01 1lhpA 312 7.60e+01 c.72.1.5 77960 1z94A 147 7.64e+01 1wosA 364 7.68e+01 b.44.2.1,d.250.1.1 109468,109469 1s29A 92 7.79e+01 a.4.5.46 98373 1pt6A 213 7.86e+01 c.62.1.1 95091 1upsA 420 7.98e+01 1qmvA 197 7.99e+01 1qq2A c.47.1.10 33066 1pvmA 184 7.99e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1ufkA 254 8.15e+01 c.66.1.39 99340 1ijbA 202 8.28e+01 c.62.1.1 71229 1i5gA 144 8.29e+01 1ewxA c.47.1.10 61784 2b0aA 186 8.37e+01 1tdpA 111 8.54e+01 a.29.8.1 106781 1sg4A 260 8.55e+01 1olmA 403 8.70e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1jf8A 131 8.74e+01 c.44.1.1 66621