# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 2.69e-39 1dywA 173 1.66e-38 2cpl b.62.1.1 27505 1ihgA 370 2.67e-38 2cpl a.118.8.1,b.62.1.1 62380,62381 1h0pA 182 5.20e-37 b.62.1.1 76450 1lopA 164 7.44e-30 2cpl b.62.1.1 27510 1icpA 376 2.55e-01 1oyc c.1.4.1 62270 1mxiA 160 6.39e-01 c.116.1.1 79646 2gk3A 256 1.82e+00 1dgnA 89 2.57e+00 1dgnA a.77.1.3 18436 1fj2A 232 4.34e+00 1auoA c.69.1.14 34720 1vyrA 364 6.38e+00 c.1.4.1 108906 1c4rA 182 6.88e+00 1c4rA b.29.1.4 24229 1ituA 369 6.96e+00 c.1.9.7 71423 1dz3A 130 7.71e+00 1dz3A c.23.1.1 31105 1jk7A 323 9.23e+00 1auiA d.159.1.3 63144 1e5kA 201 9.75e+00 1fr9A c.68.1.8 34578 1vjvA 415 1.04e+01 d.3.1.9 108632 1a8y 367 1.38e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1dqiA 124 1.38e+01 1do6A b.1.13.1 22357 1dk0A 188 1.47e+01 1b2vA d.35.1.1 38530 1thfD 253 1.53e+01 1thfD c.1.2.1 28535 1h7sA 365 1.63e+01 d.14.1.3,d.122.1.2 65705,65706 1f8rA 498 1.76e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1g8iA 190 1.85e+01 1rec a.39.1.5 60363 1i3cA 149 1.92e+01 c.23.1.1 71112 1j1iA 296 1.98e+01 c.69.1.10 83977 1fonA 240 2.07e+01 5ptp b.47.1.2 26231 1w3iA 293 2.16e+01 c.1.10.1 109152 1hu3A 260 2.17e+01 1hu3A a.118.1.14 19137 1gzcA 239 2.22e+01 b.29.1.1 70803 1f7uA 607 2.25e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 3sil 379 2.27e+01 3sil b.68.1.1 27542 1kzqA 289 2.38e+01 b.6.2.1,b.6.2.1 73374,73375 1ia8A 289 2.46e+01 1ia8A d.144.1.7 62112 1gnlA 544 2.49e+01 e.26.1.1 70287 1b77A 228 2.70e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1kgsA 225 2.86e+01 a.4.6.1,c.23.1.1 68596,68597 1dl5A 317 2.87e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1j71A 334 3.02e+01 1eagA b.50.1.2 62669 1ml4A 308 3.14e+01 c.78.1.1,c.78.1.1 79255,79256 1ym3A 215 3.30e+01 1k4nA 192 3.38e+01 d.32.1.5 72059 1ev2E 220 3.43e+01 1cvsC b.1.1.4,b.1.1.4 21738,21739 1aa6 715 3.59e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1qv9A 283 3.63e+01 c.127.1.1 96356 1o7iA 119 3.68e+01 b.40.4.3 86642 1e9pA 151 3.71e+01 1mfmA b.1.8.1 22215 1ve2A 235 3.83e+01 1sqsA 242 3.89e+01 c.23.5.5 98968 1rx0A 393 3.95e+01 a.29.3.1,e.6.1.1 98007,98008 3seb 238 3.96e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1uozA 315 3.98e+01 1isiA 265 4.16e+01 e.4.1.1 71394 1itxA 419 4.29e+01 c.1.8.5,d.26.3.1 71425,71426 1h4xA 117 4.43e+01 1auz c.13.2.1 60626 1eo6A 117 4.48e+01 1eo6A d.15.1.3 37609 1juhA 350 4.67e+01 b.82.1.5 71884 1f20A 435 4.79e+01 b.43.4.1,c.25.1.4 64932,64933 1nxuA 333 4.85e+01 c.122.1.1 86389 1e1oA 504 4.93e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1vfjA 116 4.99e+01 1g8lA 411 5.03e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1bg2 325 5.33e+01 1bg2 c.37.1.9 32189 1qwrA 319 5.39e+01 b.82.1.3 96491 1nycA 111 5.42e+01 b.61.2.2 92336 1pa1A 310 5.42e+01 c.45.1.2 94404 1lf7A 182 5.72e+01 b.60.1.1 73878 1gmuA 143 5.72e+01 b.107.1.1,d.58.38.1 65335,65336 1po5A 476 5.79e+01 a.104.1.1 94963 1qreA 247 5.84e+01 1qreA b.81.1.5 28066 1gdhA 320 5.87e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 1cliA 345 6.07e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 2gefA 217 6.21e+01 1a0tP 413 6.31e+01 1a0tP f.4.3.2 43794 1oflA 481 6.44e+01 b.80.1.4 103934 1gpc 218 6.48e+01 1gpc b.40.4.7 25393 1wouA 123 6.52e+01 c.47.1.16 109471 1cpt 412 6.58e+01 1cpt a.104.1.1 18968 1v0wA 506 6.61e+01 d.136.1.2,d.136.1.2 108220,108221 1dzlA 505 6.67e+01 1dzlA b.121.6.1 23586 1ej6B 1275 6.75e+01 i.7.1.1 45968 1vhqA 232 6.83e+01 c.23.16.2 100696 1e9rA 437 6.91e+01 c.37.1.11 64827 1guxA 218 6.95e+01 1guxA a.74.1.3 18388 1hf2A 210 6.95e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1pbyA 489 6.97e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1jmuB 666 7.01e+01 1s95A 333 7.04e+01 d.159.1.3 105375 1dp4A 435 7.08e+01 1dp4A c.93.1.1 35710 1dc1A 323 7.09e+01 1dc1A c.52.1.11 33321 1zk5A 176 7.45e+01 1w6uA 302 7.49e+01 1o9wA 177 7.55e+01 b.2.3.5 86713 1g8pA 350 7.57e+01 1g8pA c.37.1.20 60376 1io7A 368 7.84e+01 1f4tA a.104.1.1 18971 1dg9A 157 7.98e+01 1dg9A c.44.1.1 32637 1rliA 184 8.01e+01 c.23.5.6 97647 1sx5A 244 8.18e+01 c.52.1.2 99023 1j77A 209 8.29e+01 1j77A a.132.1.2 62674 1dkiA 371 8.50e+01 1dkiA d.3.1.1 37090 1jr7A 311 8.63e+01 b.82.2.3 63255 1jdw 423 8.70e+01 1jdw d.126.1.2 41129 1a70 97 8.72e+01 1awd d.15.4.1 37678 1d3gA 367 8.73e+01 1d3gA c.1.4.1 28600 1tw6A 133 8.84e+01 1ltzA 297 8.93e+01 d.178.1.1 74254 1llnA 262 8.97e+01 d.165.1.1 84625