# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dywA 173 2.34e-35 2cpl b.62.1.1 27505 1a58 177 5.18e-35 2cpl b.62.1.1 27495 2bitX 165 1.29e-34 1yndA 165 1.29e-34 2cpl 165 1.33e-34 2cpl b.62.1.1 27420 1awqA 164 1.60e-34 2cpl b.62.1.1 27461 1ihgA 370 1.75e-34 2cpl a.118.8.1,b.62.1.1 62380,62381 1awsA 164 2.54e-34 2cpl b.62.1.1 27431 2cfeA 162 5.42e-34 1zcxA 178 9.38e-34 1xo7A 166 1.45e-33 2rmcA 182 2.36e-33 2cpl b.62.1.1 27491 1vdnA 162 2.77e-33 1qoiA 177 4.57e-33 2cpl b.62.1.1 27490 1h0pA 182 1.59e-32 b.62.1.1 76450 2a2nA 176 2.84e-31 1zkcA 197 6.87e-31 1xwnA 174 4.93e-30 2fu0A 160 5.78e-30 2b71A 196 1.94e-29 1v9tA 166 8.06e-27 b.62.1.1 108451 1lopA 164 3.60e-26 2cpl b.62.1.1 27510 1j2aA 166 5.54e-24 b.62.1.1 90779 1wu7A 434 5.71e-01 1mxiA 160 9.05e-01 c.116.1.1 79646 1vr0A 247 1.34e+00 1qwgA 251 2.04e+00 c.1.27.1 96473 1gggA 226 2.67e+00 1lst c.94.1.1 35817 1xhnA 184 3.77e+00 1wggA 96 5.16e+00 1erjA 393 5.44e+00 1erjA b.69.4.1 27660 1zx8A 136 7.51e+00 1nbfA 353 8.40e+00 d.3.1.9 80387 2azpA 318 8.54e+00 1q0eA 152 9.62e+00 b.1.8.1 95504 1do6A 124 9.78e+00 1do6A b.1.13.1 22361 1qmpA 130 9.79e+00 1dz3A c.23.1.1 31106 1dqiA 124 1.01e+01 1do6A b.1.13.1 22357 1b77A 228 1.06e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 2cy7A 396 1.17e+01 1vl6A 388 1.19e+01 c.2.1.7,c.58.1.3 108724,108725 1dz3A 130 1.24e+01 1dz3A c.23.1.1 31105 1e9pA 151 1.44e+01 1mfmA b.1.8.1 22215 2b8mA 117 1.48e+01 1y7mA 164 1.51e+01 1wdnA 226 1.52e+01 1lst c.94.1.1 35816 1mdbA 539 1.57e+01 e.23.1.1 79008 1us5A 314 1.63e+01 c.94.1.1 99856 1cbjA 151 1.92e+01 1mfmA b.1.8.1 22213 1vqvA 306 1.92e+01 1oxsC 353 1.95e+01 b.40.6.3,c.37.1.12 87519,87520 1vfjA 116 1.96e+01 1lq9A 112 2.02e+01 d.58.4.3 78129 1oxxK 353 2.06e+01 b.40.6.3,c.37.1.12 93715,93716 1wriA 93 2.07e+01 1b1cA 181 2.15e+01 1amoA c.23.5.2 31212 1f0iA 504 2.16e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1v0wA 506 2.21e+01 d.136.1.2,d.136.1.2 108220,108221 1zoiA 276 2.39e+01 1rx0A 393 2.40e+01 a.29.3.1,e.6.1.1 98007,98008 1to4A 156 2.42e+01 b.1.8.1 107162 1ve4A 206 2.45e+01 1nb8A 353 2.48e+01 d.3.1.9 80385 1a70 97 2.50e+01 1awd d.15.4.1 37678 2coeA 120 2.53e+01 1g7fA 298 2.60e+01 1pty c.45.1.2 60330 1o7iA 119 2.68e+01 b.40.4.3 86642 1mveA 243 2.73e+01 b.29.1.2 85140 1ejfA 125 2.78e+01 1ejfA b.15.1.2 23683 1pa1A 310 2.79e+01 c.45.1.2 94404 1vi6A 208 2.87e+01 c.23.15.1 100736 1w2xA 758 2.95e+01 c.14.1.4,c.14.1.4 109134,109135 2b7yA 182 3.06e+01 2f71A 298 3.07e+01 1g291 372 3.38e+01 1g291 1mp4A 292 3.40e+01 c.68.1.6 79376 2a46A 238 3.43e+01 1zk5A 176 3.44e+01 1ptvA 321 3.64e+01 1pty c.45.1.2 32665 1e30A 155 3.66e+01 1rcy b.6.1.1 23016 1fxoA 293 3.72e+01 1g0rA c.68.1.6 34524 1lylA 504 3.73e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1qcsA 211 3.73e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 2as9A 210 3.73e+01 2cy5A 140 3.81e+01 1m3iA 471 3.88e+01 f.9.1.1 91178 1a8s 273 3.93e+01 1brt c.69.1.12 34710 1zoxA 113 3.99e+01 2calA 154 4.02e+01 1o5oA 221 4.10e+01 c.61.1.1 92509 1q7zA 566 4.11e+01 c.1.21.2,c.1.26.1 96090,96091 1bl3A 160 4.20e+01 1b9dA c.55.3.2 33655 1oqyA 368 4.23e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1foeA 377 4.30e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1usuB 170 4.32e+01 d.83.2.1 99886 1tllA 688 4.37e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 1wloA 136 4.42e+01 1lqtA 456 4.43e+01 c.3.1.1,c.4.1.1 74198,74199 2a9fA 398 4.55e+01 1v3rA 116 4.64e+01 1u2zA 433 4.74e+01 c.66.1.31 107626 1b78A 193 4.83e+01 1b78A c.51.4.1 33221 1wnfA 328 4.87e+01 1khbA 625 4.93e+01 c.91.1.1,c.109.1.1 68606,68607 1f20A 435 5.05e+01 b.43.4.1,c.25.1.4 64932,64933 1zq4A 693 5.12e+01 1k68A 140 5.15e+01 c.23.1.1 90943 1vjvA 415 5.18e+01 d.3.1.9 108632 1zoyA 622 5.19e+01 1ntyA 311 5.21e+01 a.87.1.1,b.55.1.1 103873,103874 1h4xA 117 5.31e+01 1auz c.13.2.1 60626 2gk3A 256 5.32e+01 1rifA 282 5.35e+01 c.37.1.23 97507 1c0eA 157 5.57e+01 1dg9A c.44.1.1 32638 1wi1A 126 5.73e+01 1nbfD 76 5.80e+01 d.15.1.1 80390 1evlA 401 5.93e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1wgkA 114 5.96e+01 1ezwA 349 5.97e+01 1ezwA c.1.16.3 29558 1std 172 5.97e+01 3stdA d.17.4.1 38089 1r4wA 226 6.00e+01 c.47.1.13 97050 1s8nA 205 6.03e+01 c.23.1.1 105374 1ubi 76 6.04e+01 1ubi d.15.1.1 37584 1ogaD 215 6.11e+01 b.1.1.1,b.1.1.2 86990,86991 1o9wA 177 6.11e+01 b.2.3.5 86713 2b59A 187 6.19e+01 1uwsA 489 6.23e+01 c.1.8.4 108073 1ogwA 76 6.28e+01 d.15.1.1 87001 1u2cA 246 6.29e+01 b.1.6.2,d.272.1.1 107610,107611 2gefA 217 6.31e+01 1j58A 385 6.35e+01 b.82.1.2 71531 2bm3A 166 6.46e+01 2bh9A 489 6.47e+01 1h5rA 293 6.51e+01 c.68.1.6 65623 1lam 484 6.55e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1k87A 669 6.58e+01 a.176.1.1,c.1.23.2 77286,77287 1d7yA 408 6.83e+01 1d7yA c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2givA 295 6.84e+01 1a04A 215 6.86e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1q1oA 98 6.90e+01 d.15.2.2 95596 1lzlA 323 7.08e+01 c.69.1.2 78306 1exqA 154 7.08e+01 1b9dA c.55.3.2 33646 1s55A 156 7.09e+01 1ja1A 622 7.13e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1hyvA 166 7.29e+01 1b9dA c.55.3.2 61424 1t94A 459 7.34e+01 d.240.1.1,e.8.1.7 106701,106702 1fjgC 239 7.39e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 2bibA 547 7.61e+01 1fonA 240 7.70e+01 5ptp b.47.1.2 26231 1nzoA 363 7.91e+01 b.105.1.1,e.3.1.1 92383,92384 1xiwA 105 7.93e+01 1jmmA 377 7.93e+01 b.30.6.1 71749 1crzA 403 7.98e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1vqoD 177 7.98e+01 3stdA 165 8.02e+01 3stdA d.17.4.1 38073 1cf2O 337 8.04e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1k66A 149 8.05e+01 c.23.1.1 90941 1yhtA 367 8.14e+01 1idpA 172 8.15e+01 d.17.4.1 83685 1zyiA 171 8.30e+01 1edqA 540 8.36e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1wlsA 328 8.39e+01 1uliB 187 8.41e+01 d.17.4.4 107923 1u5uA 374 8.41e+01 1rcy 151 8.43e+01 1rcy b.6.1.1 23018 1h7sA 365 8.45e+01 d.14.1.3,d.122.1.2 65705,65706 1wraA 308 8.52e+01 1kv9A 668 8.68e+01 a.3.1.6,b.70.1.1 73056,73057 1itg 166 8.70e+01 1b9dA c.55.3.2 33661 1df7A 159 8.77e+01 3dfr c.71.1.1 34885 1yzxA 226 8.92e+01 1odkA 235 8.97e+01 c.56.2.1 86863