# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fe5A 94 2.70e-16 2fcfA 103 4.19e-16 1g9oA 91 2.18e-15 1pdr b.36.1.1 60400 1qavA 90 3.09e-15 1qauA b.36.1.1 24777 1i92A 91 3.45e-15 1pdr b.36.1.1 61990 1tp5A 119 4.66e-15 1bfeA 119 6.57e-15 1pdr b.36.1.1 24775 1be9A 119 8.45e-15 1pdr b.36.1.1 24774 1pdr 99 1.20e-14 1pdr b.36.1.1 24771 1n7eA 97 1.48e-14 b.36.1.1 91691 1n7fA 97 2.19e-14 b.36.1.1 91692 1ihjA 98 5.19e-14 1pdr b.36.1.1 62382 1q3oA 109 6.01e-14 b.36.1.1 95700 1l6oA 95 2.12e-13 b.36.1.1 84534 1qavB 115 2.40e-13 1qauA b.36.1.1 24780 1kwaB 88 2.58e-13 1kwaA b.36.1.1 24773 2f0aA 98 3.21e-13 1i16 130 4.65e-13 1i16 b.36.1.2 24787 1qauA 112 6.27e-13 1qauA b.36.1.1 24779 1kwaA 88 6.93e-13 1kwaA b.36.1.1 24772 1b8qA 127 8.57e-13 1qauA b.36.1.1 24781 1nf3C 128 2.19e-12 b.36.1.1 85596 1mfgA 95 2.48e-12 b.36.1.1 79043 1n99A 166 2.90e-12 b.36.1.1,b.36.1.1 85459,85460 1wf7A 103 3.27e-12 1v5lA 103 1.34e-11 b.36.1.1 108378 2f5yA 91 4.64e-11 1m5zA 91 5.46e-11 b.36.1.1 78676 1nteA 82 1.63e-10 b.36.1.1 86163 1r6jA 82 1.63e-10 b.36.1.1 97151 1fc6A 388 1.52e-08 1fc6A b.36.1.3,c.14.1.2 64738,64739 1te0A 318 5.17e-06 1lcyA 325 1.25e-05 b.36.1.4,b.47.1.1 73834,73835 1ky9B 448 1.63e-04 b.36.1.4,b.36.1.4,b.47.1.1 73200,73201,73202 1y8tA 324 5.99e-04 1sotA 320 9.26e-04 b.36.1.4,b.47.1.1 105852,105853 1ky9A 448 4.80e-03 b.36.1.4,b.47.1.1 73198,73199 1zn8A 180 5.09e-02 1yg9A 330 4.58e-01 1gph1 465 5.18e-01 1ecfB 1ao0A 459 5.25e-01 1ecfB c.61.1.1,d.153.1.1 34049,41816 1fxlA 167 8.47e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1db3A 372 1.55e+00 1db3A c.2.1.2 29813 1qb7A 236 1.92e+00 1qb7A c.61.1.1 34087 1bx4A 345 2.53e+00 1bx4A c.72.1.1 34935 1lnzA 342 2.65e+00 b.117.1.1,c.37.1.8 78112,78113 1opr 213 3.07e+00 1opr c.61.1.1 34091 1g2qA 187 3.81e+00 c.61.1.1 65117 1ah1 129 3.83e+00 1ah1 b.1.1.1 20652 1lh0A 213 4.06e+00 c.61.1.1 73896 1t6t1 118 5.16e+00 2bh8A 101 6.84e+00 2d4pA 141 7.35e+00 1fm0E 150 7.97e+00 1fmaE d.41.5.1 38629 1fmaE 150 8.27e+00 1fmaE d.41.5.1 38630 1yjmA 110 9.06e+00 1x3mA 415 9.33e+00 1fwkA 296 9.43e+00 1fwkA d.14.1.5,d.58.26.1 37576,39398 1uh5A 329 1.07e+01 c.2.1.2 107840 1vpqA 273 1.07e+01 1uc2A 481 1.15e+01 d.261.1.1 99161 1fdr 248 1.16e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1fxrA 64 1.20e+01 1fxd d.58.1.4 38993 1mt6A 280 1.24e+01 b.76.2.1,b.85.7.1 79446,79447 1bu6O 501 1.28e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1h3iA 293 1.29e+01 b.76.2.1,b.85.7.1 76635,76636 1ciqA 40 1.29e+01 2sniI d.40.1.1 38576 1csp 67 1.35e+01 1mjc b.40.4.5 25321 2bsyA 278 1.41e+01 1w30A 201 1.41e+01 1koe 172 1.50e+01 1koe d.169.1.5 42448 1h72C 296 1.60e+01 d.14.1.5,d.58.26.1 60712,60713 3mefA 69 1.61e+01 1mjc b.40.4.5 25320 1o63A 219 1.61e+01 c.94.1.1 92540 2ampA 304 1.66e+01 1n6aA 259 1.71e+01 b.76.2.1,b.85.7.1 80121,80122 1evfA 264 1.90e+01 1bkpA d.117.1.1 40932 2g8oA 264 1.96e+01 1vqqA 646 1.97e+01 1qqqA 264 1.98e+01 1bkpA d.117.1.1 40931 1lvoA 302 2.00e+01 b.47.1.4 74284 1eu1A 780 2.03e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1p9uA 302 2.08e+01 b.47.1.4 88001 2g8mA 264 2.12e+01 1y0bA 197 2.21e+01 2f4wA 187 2.28e+01 1cis 66 2.33e+01 2sniI k.1.1.1 46375 1aiqA 264 2.35e+01 1bkpA d.117.1.1 40967 2fvgA 340 2.39e+01 1oroA 213 2.41e+01 1opr c.61.1.1 34093 1c9oA 66 2.42e+01 1mjc b.40.4.5 25325 1ad3A 452 2.50e+01 1ad3A c.82.1.1 35335 1axwA 265 2.54e+01 1bkpA d.117.1.1 40938 1zm8A 259 2.66e+01 1mwrA 646 2.71e+01 d.17.4.5,d.175.1.1,e.3.1.1 79586,79587,79588 1fr3A 67 2.72e+01 1fr3A b.40.6.1 25436 1f9zA 135 2.74e+01 1qipA d.32.1.1 38484 1jzxK 205 2.83e+01 i.1.1.2 67885 2sxl 88 2.87e+01 1b7fA d.58.7.1 39179 1ecfB 504 2.87e+01 1ecfB c.61.1.1,d.153.1.1 34054,41821 1tys 265 2.87e+01 1bkpA d.117.1.1 40937 1ecfA 504 2.88e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1sw5A 275 2.92e+01 c.94.1.1 106069 1l6zA 216 2.99e+01 b.1.1.1,b.1.1.4 77770,77771 1a44 185 3.01e+01 1a44 b.17.1.1 23704 1w78A 422 3.14e+01 1b7aA 186 3.15e+01 1a44 b.17.1.1 23705 1fa8A 135 3.26e+01 1qipA d.32.1.1 38486 1reqD 637 3.31e+01 1reqB c.1.19.1,c.23.6.1 29623,31250 1mjc 69 3.40e+01 1mjc b.40.4.5 25319 7reqB 637 3.44e+01 1reqB c.1.19.1,c.23.6.1 29617,31244 1cliA 345 3.48e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1cq3A 233 3.49e+01 1cq3A b.27.1.1 23923 2az4A 429 3.56e+01 1uthA 315 3.59e+01 c.94.1.1 108032 1amz 435 3.61e+01 1csh a.103.1.1 18884 1coaI 64 3.64e+01 2sniI d.40.1.1 38574 1mq7A 154 3.71e+01 b.85.4.1 79404 2f69A 261 3.71e+01 1dfd 64 3.71e+01 1fxd d.58.1.4 38995 1reqB 637 3.71e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1xx6A 191 3.73e+01 1j1lA 290 3.84e+01 b.82.1.12 90766 1e6oH 219 4.08e+01 1igtB b.1.1.1,b.1.1.2 20495,21453 1dax 64 4.18e+01 1fxd d.58.1.4 38996 1r13A 148 4.18e+01 d.169.1.1,h.1.1.1 96782,96783 1yemA 179 4.25e+01 1q52A 314 4.26e+01 c.14.1.3 95846 1rypL 212 4.27e+01 d.153.1.4 41880 1g65K 211 4.27e+01 d.153.1.4 41907 2brfA 110 4.32e+01 1iyu 79 4.40e+01 1iyu b.84.1.1 28227 1r62A 160 4.43e+01 d.122.1.3 104816 1xv5A 401 4.48e+01 1csh 435 4.62e+01 1csh a.103.1.1 18880 1al6 437 4.64e+01 1csh a.103.1.1 18885 1mwsA 646 4.90e+01 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 1t3qB 788 4.93e+01 d.41.1.1,d.133.1.1 106369,106370 1vkmA 297 4.94e+01 c.138.1.1 108670 1vraB 215 4.94e+01 1xdnA 277 4.94e+01 1l5aA 436 4.95e+01 c.43.1.2,c.43.1.2 75923,75924 1llnA 262 4.96e+01 d.165.1.1 84625 2bb3A 221 5.31e+01 2sniI 83 5.32e+01 2sniI d.40.1.1 38573 3sxlA 184 5.38e+01 1b7fA d.58.7.1,d.58.7.1 39173,39174 1wnfA 328 5.45e+01 1eb0A 147 5.50e+01 b.107.1.1,d.58.38.1 64890,64891 1wlsA 328 5.55e+01 1h3gA 601 5.57e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1sw5B 275 5.58e+01 c.94.1.1 106070 1ojhA 65 5.65e+01 a.214.1.1 103976 1d7oA 297 5.70e+01 1enp c.2.1.2 29907 1rovA 857 5.83e+01 a.119.1.1,b.12.1.1 97674,97675 1lnh 857 5.95e+01 1yge a.119.1.1,b.12.1.1 19237,23637 1rwrA 301 6.01e+01 b.80.1.11 97990 2cc0A 195 6.11e+01 1vf7A 369 6.12e+01 f.46.1.1 108557 1ueoA 63 6.14e+01 j.107.1.1 99269 1l7bA 92 6.14e+01 c.15.1.2 91053 1eno 312 6.16e+01 1enp c.2.1.2 29905 1jalA 363 6.19e+01 c.37.1.8,d.15.10.2 84138,84139 1enp 312 6.20e+01 1enp c.2.1.2 29906 1hcz 252 6.25e+01 1hcz b.2.6.1,b.84.2.2 22464,28250 1u9yA 284 6.30e+01 1earA 147 6.37e+01 b.107.1.1,d.58.38.1 64875,64876 1to2I 64 6.46e+01 2tscA 264 6.58e+01 1bkpA d.117.1.1 40952 1q1rA 431 6.82e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1b7fA 168 6.86e+01 1b7fA d.58.7.1,d.58.7.1 39169,39170 1mkmA 249 6.92e+01 a.4.5.33,d.110.2.2 79242,79243 1jnyA 435 7.13e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1t5eA 360 7.16e+01 f.46.1.1 106436 1rypB 250 7.17e+01 1rypB d.153.1.4 41933 1x92A 199 7.18e+01 2cyjA 118 7.20e+01 1lw6I 64 7.26e+01 d.40.1.1 74294 1kw4A 89 7.38e+01 a.60.1.2 73077 1shwA 138 7.40e+01 b.6.1.5 105562 1vchA 175 7.52e+01 1js8A 394 7.55e+01 a.86.1.1,b.112.1.1 67219,67220 1l1dA 152 7.55e+01 b.88.1.3 73452 1iieA 75 7.69e+01 1iieA a.109.1.1 19039 1zq9A 285 7.73e+01 1n0qA 93 7.77e+01 k.37.1.1 79754 1ti6A 875 7.78e+01 b.52.2.2,c.81.1.1 106974,106975 1fsgA 233 7.81e+01 1qk3A c.61.1.1 34029 1poiA 317 7.96e+01 1poiA c.124.1.2 34153 1iezA 217 7.96e+01 d.115.1.2 66129 1dmr 823 8.05e+01 1dmr b.52.2.2,c.81.1.1 26904,35312 1j08A 226 8.07e+01 c.47.1.2,c.47.1.2 83855,83856 1e3tA 203 8.12e+01 1d4oA c.31.1.4 31749 1xmrA 243 8.28e+01 1tsm 316 8.59e+01 1bkpA d.117.1.1 41024 1vheA 373 8.85e+01 b.49.3.1,c.56.5.4 100669,100670 1afvH 220 8.92e+01 1mfa b.1.1.1,b.1.1.2 20131,21161 1txyA 104 8.95e+01 1f28A 297 8.95e+01 1bkpA d.117.1.1 59608 1oi7A 288 8.95e+01 c.2.1.8,c.23.4.1 87049,87050 1b0fA 218 8.97e+01 1a7s b.47.1.2 26237