PFRMAT RR TARGET T0284 AUTHOR 5370-1100-4902 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: logseploglen.5xt04_ent.3xnearNS_str2.miRvp_pplR.n28.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 MHRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGS VASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVM RTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARV DPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIA EHLHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLR EERGAVASDLTASELSKKYTFPEEYQAWARDYMEVKE 13 23 0 8 0.761401091889 13 34 0 8 0.762734982409 13 36 0 8 0.782865731209 13 37 0 8 0.770469639696 13 77 0 8 0.760134628449 23 44 0 8 0.801205800201 23 45 0 8 0.831528781924 23 46 0 8 0.812267785081 23 114 0 8 0.797316841476 23 185 0 8 0.799373681929 24 45 0 8 0.832256622961 24 46 0 8 0.812583256356 24 114 0 8 0.785288407225 24 185 0 8 0.795050422336 24 186 0 8 0.770539862416 25 36 0 8 0.782872809601 25 37 0 8 0.776368929924 25 44 0 8 0.819944738064 25 45 0 8 0.840445230564 25 46 0 8 0.798690753025 25 47 0 8 0.767875401225 25 114 0 8 0.796358127321 25 185 0 8 0.804422434816 26 36 0 8 0.781524953521 26 44 0 8 0.793236047044 26 45 0 8 0.841809920004 26 46 0 8 0.793125611776 26 114 0 8 0.769151802169 26 185 0 8 0.7863432976 28 45 0 8 0.810750773889 28 46 0 8 0.761996309776 29 45 0 8 0.790824254089 32 45 0 8 0.761048609161 34 45 0 8 0.759580228521 36 45 0 8 0.778031607721 44 85 0 8 0.779879739664 44 86 0 8 0.797486506441 44 114 0 8 0.803423602921 44 185 0 8 0.810929066256 44 186 0 8 0.788648787481 45 57 0 8 0.827108397025 45 59 0 8 0.77739489 45 65 0 8 0.794027130724 45 67 0 8 0.802222957561 45 70 0 8 0.823788586384 45 71 0 8 0.794793646144 45 74 0 8 0.8285186529 45 77 0 8 0.833128992081 45 78 0 8 0.781441856064 45 80 0 8 0.772846699689 45 83 0 8 0.7694272089 45 84 0 8 0.7630371904 45 85 0 8 0.861805872225 45 86 0 8 0.842707476081 45 87 0 8 0.825521250724 45 89 0 8 0.760736328804 45 93 0 8 0.760138115881 45 99 0 8 0.821338000729 45 100 0 8 0.776612137536 45 103 0 8 0.807904357225 45 106 0 8 0.824703729424 45 109 0 8 0.793852488256 45 113 0 8 0.810739968921 45 114 0 8 0.851869929024 45 116 0 8 0.832066879329 45 139 0 8 0.761907274129 45 142 0 8 0.8063142025 45 144 0 8 0.7769188449 45 145 0 8 0.776576887696 45 155 0 8 0.774016367524 45 156 0 8 0.818972510841 45 170 0 8 0.786607574281 45 171 0 8 0.773808752896 45 174 0 8 0.775739939121 45 177 0 8 0.779291700625 45 180 0 8 0.771542640625 45 184 0 8 0.820547917281 45 185 0 8 0.852228078244 45 186 0 8 0.829035744196 45 187 0 8 0.804786615801 45 196 0 8 0.784629238849 45 199 0 8 0.789905002756 45 209 0 8 0.806977025761 45 210 0 8 0.803595709225 45 223 0 8 0.783651628081 45 226 0 8 0.771172010896 45 231 0 8 0.798149265664 46 67 0 8 0.784863105625 46 70 0 8 0.796891865344 46 71 0 8 0.785440835001 46 73 0 8 0.788433891844 46 77 0 8 0.802128019456 46 85 0 8 0.835238799396 46 86 0 8 0.805226254336 46 99 0 8 0.800849589604 46 102 0 8 0.774850625536 46 103 0 8 0.783612677961 46 106 0 8 0.809129034256 46 113 0 8 0.768275039169 46 114 0 8 0.839999745225 46 116 0 8 0.801001730169 46 142 0 8 0.775991857216 46 156 0 8 0.803563437889 46 170 0 8 0.760507829041 46 171 0 8 0.762261701776 46 184 0 8 0.785061565369 46 185 0 8 0.843592651729 46 186 0 8 0.804783027409 46 187 0 8 0.769307918404 46 231 0 8 0.770536351204 47 67 0 8 0.767093953921 47 70 0 8 0.785914164324 47 71 0 8 0.777922236001 47 74 0 8 0.816088197376 47 77 0 8 0.807810881089 47 85 0 8 0.818588848081 47 86 0 8 0.797986676601 47 87 0 8 0.776857146025 47 99 0 8 0.793106019225 47 103 0 8 0.783637464289 47 106 0 8 0.801137773969 47 114 0 8 0.839974083001 47 116 0 8 0.7882243524 47 142 0 8 0.770290586244 47 185 0 8 0.837519655921 47 186 0 8 0.798388712676 52 67 0 8 0.761985834724 52 74 0 8 0.760500852489 52 77 0 8 0.7697254756 56 77 0 8 0.764858691844 67 77 0 8 0.777532441284 74 99 0 8 0.760321217296 77 99 0 8 0.761287660324 77 106 0 8 0.769071119089 83 114 0 8 0.764877932329 83 185 0 8 0.771969589924 84 114 0 8 0.761235310144 84 185 0 8 0.773085838009 85 114 0 8 0.821867351761 85 116 0 8 0.8053985536 85 142 0 8 0.764706525625 85 185 0 8 0.814820350276 85 186 0 8 0.803785764681 86 99 0 8 0.808792650241 86 100 0 8 0.782938286244 86 103 0 8 0.801426010176 86 106 0 8 0.803611845136 86 114 0 8 0.842202656656 86 116 0 8 0.802420016841 86 156 0 8 0.772598808576 86 184 0 8 0.782117371876 86 185 0 8 0.831623620356 86 186 0 8 0.811426227264 87 99 0 8 0.822625418169 87 103 0 8 0.817516155556 87 106 0 8 0.817868818321 87 113 0 8 0.7992896409 87 114 0 8 0.854676213169 87 116 0 8 0.812249760001 87 142 0 8 0.784179320521 87 156 0 8 0.761092228836 87 185 0 8 0.839864106481 87 186 0 8 0.810619318336 88 99 0 8 0.782511852409 88 102 0 8 0.767651088649 88 106 0 8 0.773916075625 88 114 0 8 0.770000985009 88 185 0 8 0.781797261249 89 114 0 8 0.776201526529 103 114 0 8 0.760467714304 103 116 0 8 0.768085724025 106 116 0 8 0.7785415225 113 185 0 8 0.804155182009 113 186 0 8 0.780439730625 114 125 0 8 0.785926575625 114 132 0 8 0.791715566656 114 139 0 8 0.766053810025 114 142 0 8 0.8245003204 114 144 0 8 0.783037391236 114 145 0 8 0.791308098025 114 155 0 8 0.781928127289 114 156 0 8 0.829634970649 114 157 0 8 0.796922217025 114 170 0 8 0.777467191081 114 171 0 8 0.773798196964 114 174 0 8 0.766323409201 114 177 0 8 0.765598750225 114 184 0 8 0.822915679609 114 185 0 8 0.853914605625 114 186 0 8 0.832676325121 114 187 0 8 0.8043937344 114 196 0 8 0.7727289025 114 199 0 8 0.786400051264 114 209 0 8 0.798369055225 114 210 0 8 0.797459716036 114 223 0 8 0.766778684281 114 231 0 8 0.783669333001 116 125 0 8 0.7623210721 116 139 0 8 0.763297521561 116 142 0 8 0.809373721104 116 156 0 8 0.790708651524 116 184 0 8 0.766095822361 116 185 0 8 0.840491069089 116 186 0 8 0.809852406724 117 185 0 8 0.779821455625 132 142 0 8 0.781638114609 132 185 0 8 0.8054165025 133 142 0 8 0.770657492641 133 185 0 8 0.782538390544 142 170 0 8 0.761626234944 142 171 0 8 0.781429480225 142 185 0 8 0.784120876036 142 199 0 8 0.7644179761 154 185 0 8 0.808929354025 154 186 0 8 0.759925397169 155 185 0 8 0.817659020025 156 171 0 8 0.761490097956 156 184 0 8 0.7725706816 156 185 0 8 0.840316889344 156 186 0 8 0.807809083524 158 185 0 8 0.823329390625 159 185 0 8 0.773974138564 164 185 0 8 0.771563721769 170 185 0 8 0.765080846721 171 185 0 8 0.778479759225 174 185 0 8 0.7945761321 184 210 0 8 0.783908368996 184 231 0 8 0.776180382121 185 196 0 8 0.835973747856 185 199 0 8 0.838709787721 185 200 0 8 0.798354759049 185 203 0 8 0.799498857609 185 207 0 8 0.834321481744 185 209 0 8 0.850642823809 185 210 0 8 0.842351333209 185 212 0 8 0.770847124441 185 223 0 8 0.832798606084 185 226 0 8 0.823627036521 185 231 0 8 0.8323642756 185 232 0 8 0.76300225 185 237 0 8 0.774394720009 185 240 0 8 0.791660401009 185 241 0 8 0.801254136384 185 242 0 8 0.798833750625 185 245 0 8 0.814820350276 185 248 0 8 0.794387168656 185 249 0 8 0.785295496561 185 252 0 8 0.787658025001 185 256 0 8 0.768669520644 186 195 0 8 0.796690130625 186 196 0 8 0.821278187536 186 199 0 8 0.828631525264 186 200 0 8 0.783249780196 186 203 0 8 0.791005678225 186 209 0 8 0.845570363401 186 210 0 8 0.825710246596 186 223 0 8 0.822970109329 186 226 0 8 0.799153754116 186 231 0 8 0.8198578116 186 240 0 8 0.778301541796 186 242 0 8 0.7737313444 186 245 0 8 0.788121368644 186 248 0 8 0.779002177321 186 252 0 8 0.7632293769 187 196 0 8 0.815492078116 187 199 0 8 0.8258265625 187 200 0 8 0.775530332164 187 203 0 8 0.790187655625 187 207 0 8 0.767314681225 187 209 0 8 0.832159923984 187 210 0 8 0.821508389641 187 223 0 8 0.805910175625 187 226 0 8 0.768218943361 187 231 0 8 0.801486886564 187 245 0 8 0.764542133161 199 223 0 8 0.769316689449 203 223 0 8 0.762462522481 209 223 0 8 0.779455905424 209 231 0 8 0.772880106496 210 223 0 8 0.796047606225 210 231 0 8 0.780001613329 223 245 0 8 0.768681795025 223 252 0 8 0.759873093849 231 240 0 8 0.7907122084 231 242 0 8 0.774283844356 231 245 0 8 0.790617953889 231 248 0 8 0.777396653401 END