# TARGET T0283 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0283.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.04591 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.003 0.806 0.001 0.006 0.091 0.001 0.001 0.001 0.070 0.015 0.006 0.002 2 S 0.001 0.020 0.589 0.001 0.011 0.290 0.001 0.001 0.003 0.039 0.031 0.003 0.014 3 F 0.003 0.008 0.082 0.001 0.028 0.792 0.001 0.001 0.001 0.026 0.046 0.004 0.008 4 I 0.001 0.001 0.031 0.001 0.020 0.920 0.001 0.001 0.001 0.007 0.011 0.003 0.004 5 E 0.001 0.001 0.011 0.001 0.028 0.936 0.001 0.001 0.001 0.006 0.011 0.002 0.002 6 K 0.002 0.001 0.010 0.001 0.018 0.942 0.001 0.001 0.001 0.005 0.017 0.001 0.004 7 M 0.001 0.001 0.014 0.001 0.015 0.921 0.001 0.001 0.001 0.006 0.037 0.001 0.002 8 I 0.001 0.002 0.020 0.001 0.022 0.828 0.001 0.001 0.001 0.016 0.106 0.001 0.002 9 G 0.001 0.001 0.049 0.001 0.040 0.634 0.001 0.001 0.001 0.057 0.208 0.005 0.003 10 S 0.001 0.002 0.105 0.001 0.059 0.689 0.001 0.001 0.002 0.035 0.098 0.001 0.008 11 L 0.001 0.008 0.107 0.001 0.032 0.692 0.001 0.001 0.004 0.065 0.083 0.002 0.006 12 N 0.001 0.002 0.136 0.003 0.041 0.518 0.001 0.001 0.002 0.077 0.214 0.003 0.004 13 D 0.001 0.001 0.213 0.001 0.032 0.570 0.001 0.001 0.004 0.070 0.100 0.002 0.006 14 K 0.001 0.003 0.137 0.001 0.011 0.785 0.001 0.001 0.005 0.028 0.020 0.003 0.006 15 R 0.001 0.005 0.094 0.001 0.008 0.823 0.001 0.001 0.005 0.027 0.018 0.011 0.006 16 E 0.003 0.003 0.096 0.001 0.006 0.835 0.001 0.001 0.007 0.013 0.014 0.004 0.019 17 W 0.001 0.001 0.031 0.001 0.003 0.951 0.001 0.001 0.001 0.006 0.005 0.001 0.002 18 K 0.001 0.001 0.005 0.001 0.002 0.985 0.001 0.001 0.001 0.002 0.004 0.001 0.001 19 A 0.001 0.001 0.003 0.001 0.002 0.984 0.001 0.001 0.001 0.002 0.008 0.001 0.001 20 M 0.001 0.001 0.004 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.005 0.001 0.001 21 E 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 22 A 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 23 R 0.001 0.001 0.001 0.001 0.002 0.989 0.001 0.001 0.001 0.001 0.008 0.001 0.001 24 A 0.001 0.001 0.006 0.001 0.007 0.971 0.001 0.001 0.001 0.004 0.012 0.001 0.001 25 K 0.001 0.001 0.004 0.001 0.022 0.873 0.001 0.001 0.001 0.002 0.098 0.001 0.001 26 A 0.001 0.001 0.008 0.001 0.017 0.616 0.001 0.001 0.001 0.008 0.350 0.001 0.001 27 L 0.001 0.001 0.373 0.001 0.011 0.312 0.001 0.001 0.001 0.208 0.095 0.001 0.001 28 P 0.001 0.001 0.583 0.001 0.026 0.313 0.001 0.001 0.001 0.045 0.031 0.001 0.001 29 K 0.001 0.001 0.020 0.001 0.045 0.896 0.001 0.001 0.001 0.015 0.023 0.001 0.001 30 E 0.001 0.001 0.006 0.001 0.033 0.946 0.001 0.001 0.001 0.004 0.011 0.001 0.001 31 Y 0.001 0.001 0.003 0.001 0.004 0.988 0.001 0.001 0.001 0.002 0.003 0.001 0.001 32 H 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 33 H 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 34 A 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 35 Y 0.001 0.001 0.002 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 36 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 37 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 38 I 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 39 Q 0.001 0.001 0.003 0.001 0.004 0.982 0.001 0.001 0.001 0.002 0.008 0.001 0.001 40 K 0.001 0.001 0.003 0.001 0.012 0.950 0.001 0.001 0.001 0.003 0.030 0.001 0.001 41 Y 0.001 0.001 0.004 0.001 0.015 0.885 0.001 0.001 0.001 0.005 0.090 0.001 0.001 42 M 0.001 0.005 0.040 0.001 0.021 0.705 0.001 0.002 0.007 0.035 0.181 0.001 0.003 43 W 0.001 0.019 0.181 0.003 0.042 0.483 0.001 0.005 0.016 0.082 0.148 0.009 0.011 44 T 0.002 0.010 0.155 0.003 0.062 0.330 0.001 0.006 0.018 0.121 0.269 0.007 0.015 45 S 0.004 0.014 0.199 0.002 0.075 0.142 0.001 0.003 0.011 0.186 0.339 0.009 0.016 46 G 0.002 0.022 0.337 0.004 0.032 0.067 0.001 0.001 0.007 0.274 0.231 0.006 0.016 47 G 0.001 0.019 0.389 0.006 0.022 0.029 0.001 0.001 0.006 0.391 0.111 0.018 0.008 48 P 0.001 0.017 0.494 0.004 0.033 0.038 0.001 0.001 0.005 0.236 0.146 0.003 0.022 49 T 0.003 0.040 0.430 0.003 0.047 0.059 0.001 0.001 0.009 0.215 0.153 0.027 0.011 50 D 0.002 0.042 0.528 0.001 0.046 0.090 0.001 0.001 0.010 0.144 0.101 0.007 0.028 51 W 0.001 0.007 0.181 0.001 0.178 0.371 0.001 0.001 0.004 0.067 0.180 0.002 0.008 52 Q 0.002 0.007 0.061 0.001 0.135 0.520 0.001 0.001 0.002 0.081 0.179 0.006 0.004 53 D 0.001 0.008 0.078 0.002 0.132 0.530 0.001 0.001 0.002 0.072 0.164 0.002 0.009 54 T 0.001 0.004 0.057 0.001 0.040 0.809 0.001 0.001 0.004 0.024 0.053 0.003 0.005 55 K 0.001 0.002 0.033 0.001 0.032 0.868 0.001 0.001 0.001 0.024 0.033 0.003 0.003 56 R 0.002 0.004 0.022 0.001 0.028 0.874 0.001 0.001 0.007 0.014 0.037 0.002 0.008 57 I 0.001 0.004 0.022 0.001 0.029 0.868 0.001 0.001 0.003 0.013 0.053 0.002 0.002 58 F 0.001 0.001 0.018 0.001 0.013 0.909 0.001 0.001 0.002 0.011 0.044 0.001 0.002 59 G 0.001 0.001 0.013 0.001 0.012 0.915 0.001 0.001 0.001 0.014 0.044 0.001 0.001 60 G 0.001 0.001 0.010 0.001 0.005 0.953 0.001 0.001 0.001 0.005 0.025 0.001 0.001 61 I 0.001 0.001 0.010 0.001 0.003 0.974 0.001 0.001 0.001 0.003 0.007 0.001 0.001 62 L 0.001 0.001 0.005 0.001 0.002 0.984 0.001 0.001 0.001 0.003 0.004 0.001 0.001 63 D 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.005 0.001 0.001 64 L 0.001 0.001 0.002 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.007 0.001 0.001 65 F 0.001 0.001 0.004 0.001 0.001 0.983 0.001 0.001 0.001 0.003 0.007 0.001 0.001 66 E 0.001 0.001 0.005 0.001 0.002 0.972 0.001 0.001 0.001 0.003 0.014 0.001 0.001 67 E 0.001 0.001 0.008 0.001 0.004 0.944 0.001 0.001 0.001 0.009 0.027 0.001 0.003 68 G 0.002 0.001 0.011 0.001 0.006 0.919 0.001 0.001 0.001 0.010 0.042 0.004 0.002 69 A 0.005 0.003 0.015 0.001 0.009 0.886 0.001 0.002 0.002 0.009 0.061 0.001 0.005 70 A 0.006 0.006 0.021 0.001 0.010 0.864 0.001 0.001 0.003 0.009 0.064 0.011 0.004 71 E 0.001 0.001 0.002 0.001 0.003 0.107 0.001 0.001 0.001 0.012 0.875 0.001 0.001 72 G 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.982 0.001 0.001 73 K 0.006 0.023 0.693 0.001 0.001 0.001 0.002 0.001 0.014 0.069 0.003 0.161 0.026 74 K 0.002 0.104 0.482 0.001 0.001 0.001 0.003 0.001 0.128 0.010 0.001 0.012 0.254 75 V 0.005 0.037 0.357 0.078 0.131 0.073 0.013 0.011 0.111 0.020 0.030 0.027 0.107 76 T 0.003 0.003 0.119 0.163 0.294 0.087 0.008 0.017 0.056 0.129 0.073 0.029 0.019 77 D 0.004 0.004 0.083 0.013 0.339 0.118 0.011 0.029 0.163 0.107 0.060 0.017 0.051 78 L 0.008 0.039 0.181 0.007 0.060 0.204 0.013 0.045 0.228 0.060 0.038 0.031 0.085 79 T 0.005 0.059 0.292 0.006 0.013 0.219 0.004 0.014 0.122 0.127 0.072 0.026 0.039 80 G 0.001 0.005 0.304 0.005 0.018 0.310 0.001 0.004 0.017 0.218 0.105 0.003 0.009 81 E 0.001 0.005 0.119 0.001 0.030 0.549 0.001 0.001 0.003 0.177 0.109 0.004 0.002 82 D 0.001 0.022 0.132 0.001 0.038 0.655 0.001 0.001 0.003 0.084 0.059 0.001 0.006 83 V 0.001 0.001 0.021 0.001 0.015 0.936 0.001 0.001 0.001 0.008 0.017 0.001 0.001 84 A 0.001 0.001 0.003 0.001 0.007 0.979 0.001 0.001 0.001 0.002 0.009 0.001 0.001 85 A 0.001 0.001 0.002 0.001 0.005 0.982 0.001 0.001 0.001 0.002 0.010 0.001 0.001 86 F 0.001 0.001 0.001 0.001 0.003 0.983 0.001 0.001 0.001 0.001 0.012 0.001 0.001 87 C 0.001 0.001 0.004 0.001 0.004 0.982 0.001 0.001 0.001 0.002 0.008 0.001 0.001 88 D 0.001 0.001 0.002 0.001 0.009 0.977 0.001 0.001 0.001 0.001 0.010 0.001 0.001 89 E 0.001 0.001 0.002 0.001 0.008 0.968 0.001 0.001 0.001 0.002 0.020 0.001 0.001 90 L 0.001 0.001 0.003 0.001 0.012 0.951 0.001 0.001 0.001 0.002 0.033 0.001 0.001 91 M 0.001 0.002 0.018 0.001 0.013 0.871 0.001 0.001 0.001 0.021 0.074 0.001 0.001 92 K 0.001 0.001 0.043 0.001 0.031 0.702 0.001 0.001 0.001 0.020 0.201 0.001 0.001 93 D 0.001 0.001 0.051 0.001 0.027 0.529 0.001 0.001 0.001 0.058 0.333 0.001 0.001 94 T 0.001 0.003 0.218 0.001 0.024 0.325 0.001 0.001 0.001 0.126 0.300 0.001 0.001 95 K 0.001 0.007 0.290 0.001 0.025 0.343 0.001 0.001 0.003 0.192 0.133 0.003 0.002 96 T 0.001 0.018 0.261 0.001 0.020 0.502 0.001 0.001 0.010 0.112 0.058 0.005 0.012 97 W 0.001 0.009 0.091 0.001 0.037 0.769 0.001 0.001 0.006 0.035 0.046 0.002 0.005 98 M 0.001 0.001 0.034 0.001 0.011 0.924 0.001 0.001 0.001 0.009 0.015 0.001 0.002 99 D 0.001 0.001 0.009 0.001 0.006 0.972 0.001 0.001 0.001 0.004 0.007 0.001 0.001 100 K 0.001 0.001 0.005 0.001 0.004 0.982 0.001 0.001 0.001 0.002 0.005 0.001 0.001 101 Y 0.001 0.001 0.003 0.001 0.003 0.983 0.001 0.001 0.001 0.002 0.009 0.001 0.001 102 R 0.001 0.001 0.006 0.001 0.003 0.980 0.001 0.001 0.001 0.003 0.007 0.001 0.001 103 T 0.001 0.001 0.004 0.001 0.004 0.975 0.001 0.001 0.001 0.002 0.014 0.001 0.001 104 K 0.001 0.001 0.008 0.001 0.004 0.954 0.001 0.001 0.001 0.004 0.029 0.001 0.001 105 L 0.001 0.001 0.017 0.001 0.006 0.907 0.001 0.001 0.001 0.010 0.059 0.001 0.001 106 N 0.001 0.003 0.060 0.001 0.027 0.764 0.001 0.001 0.001 0.026 0.117 0.001 0.001 107 D 0.001 0.001 0.032 0.001 0.055 0.637 0.001 0.001 0.001 0.042 0.231 0.001 0.001 108 S 0.001 0.002 0.054 0.001 0.075 0.528 0.001 0.001 0.001 0.042 0.295 0.001 0.003 109 I 0.001 0.014 0.268 0.001 0.056 0.370 0.001 0.001 0.002 0.129 0.144 0.003 0.011 110 G 0.002 0.018 0.433 0.002 0.036 0.144 0.001 0.001 0.003 0.117 0.211 0.019 0.015 111 R 0.001 0.012 0.686 0.002 0.018 0.054 0.001 0.001 0.003 0.126 0.075 0.006 0.017 112 D 0.001 0.002 0.963 0.001 0.003 0.003 0.001 0.001 0.001 0.020 0.003 0.001 0.004