# TARGET T0283 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment /projects/compbio/experiments/protein-predict/casp7/T0283/T0283.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.04591 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.035 0.012 0.057 0.041 0.001 0.082 0.003 0.002 0.004 0.008 0.089 0.086 0.564 0.001 0.003 0.013 2 S 0.007 0.010 0.011 0.012 0.001 0.110 0.001 0.001 0.001 0.001 0.139 0.185 0.521 0.001 0.001 0.001 3 F 0.001 0.004 0.002 0.005 0.001 0.025 0.001 0.001 0.001 0.001 0.137 0.201 0.622 0.001 0.001 0.001 4 I 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.012 0.101 0.878 0.001 0.001 0.001 5 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.990 0.001 0.001 0.001 6 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.990 0.001 0.001 0.002 7 M 0.001 0.001 0.004 0.001 0.001 0.001 0.022 0.001 0.001 0.001 0.001 0.001 0.813 0.145 0.003 0.006 8 I 0.001 0.002 0.009 0.001 0.001 0.001 0.008 0.003 0.001 0.001 0.003 0.002 0.786 0.009 0.168 0.005 9 G 0.001 0.001 0.004 0.003 0.001 0.002 0.002 0.001 0.002 0.002 0.004 0.004 0.816 0.007 0.008 0.141 10 S 0.060 0.003 0.005 0.002 0.001 0.008 0.019 0.001 0.001 0.001 0.015 0.017 0.764 0.068 0.006 0.030 11 L 0.003 0.007 0.036 0.002 0.001 0.007 0.017 0.005 0.001 0.001 0.048 0.030 0.769 0.016 0.050 0.009 12 N 0.002 0.015 0.025 0.009 0.001 0.009 0.008 0.005 0.003 0.002 0.014 0.077 0.756 0.010 0.024 0.041 13 D 0.020 0.004 0.012 0.007 0.001 0.019 0.011 0.003 0.002 0.002 0.030 0.025 0.797 0.021 0.011 0.034 14 K 0.006 0.007 0.048 0.004 0.001 0.015 0.005 0.003 0.001 0.001 0.073 0.045 0.752 0.002 0.028 0.009 15 R 0.003 0.004 0.011 0.004 0.001 0.012 0.002 0.001 0.001 0.001 0.047 0.090 0.810 0.001 0.002 0.013 16 E 0.004 0.005 0.004 0.003 0.001 0.013 0.001 0.001 0.001 0.001 0.018 0.083 0.861 0.002 0.001 0.003 17 W 0.001 0.001 0.003 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.016 0.019 0.946 0.001 0.001 0.001 18 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.035 0.937 0.001 0.001 0.001 19 A 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.022 0.970 0.001 0.001 0.001 20 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.993 0.001 0.001 0.001 21 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.989 0.001 0.001 0.001 22 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.991 0.001 0.002 0.001 23 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.989 0.002 0.001 0.003 24 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.985 0.004 0.002 0.001 25 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.008 0.977 0.002 0.005 0.003 26 A 0.003 0.001 0.004 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.629 0.056 0.008 0.292 27 L 0.003 0.001 0.259 0.002 0.001 0.003 0.023 0.001 0.001 0.001 0.001 0.001 0.658 0.003 0.032 0.014 28 P 0.001 0.001 0.009 0.001 0.001 0.099 0.006 0.001 0.001 0.001 0.019 0.002 0.857 0.001 0.001 0.004 29 K 0.001 0.016 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.510 0.086 0.372 0.003 0.001 0.001 30 E 0.001 0.008 0.002 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.006 0.453 0.507 0.004 0.007 0.006 31 Y 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.966 0.001 0.003 0.004 32 H 0.001 0.001 0.002 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.010 0.014 0.969 0.001 0.001 0.001 33 H 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.020 0.966 0.001 0.001 0.001 34 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.979 0.001 0.001 0.001 35 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.995 0.001 0.001 0.001 36 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.992 0.001 0.001 0.001 37 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.995 0.001 0.001 0.001 38 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 39 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 40 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.002 0.001 41 Y 0.001 0.001 0.005 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.933 0.012 0.004 0.037 42 M 0.003 0.003 0.032 0.007 0.001 0.001 0.019 0.001 0.001 0.001 0.001 0.002 0.863 0.013 0.019 0.036 43 W 0.006 0.008 0.096 0.023 0.005 0.015 0.043 0.001 0.001 0.001 0.003 0.003 0.682 0.038 0.012 0.064 44 T 0.017 0.025 0.045 0.039 0.067 0.034 0.139 0.010 0.002 0.002 0.029 0.006 0.263 0.257 0.021 0.044 45 S 0.009 0.088 0.068 0.045 0.047 0.021 0.146 0.076 0.010 0.004 0.044 0.022 0.101 0.117 0.157 0.046 46 G 0.026 0.103 0.149 0.149 0.004 0.013 0.020 0.060 0.077 0.030 0.013 0.033 0.073 0.005 0.117 0.130 47 G 0.236 0.028 0.113 0.077 0.017 0.146 0.038 0.005 0.037 0.085 0.021 0.040 0.072 0.005 0.005 0.077 48 P 0.139 0.090 0.154 0.101 0.026 0.083 0.017 0.023 0.004 0.003 0.252 0.038 0.045 0.009 0.007 0.009 49 T 0.012 0.113 0.090 0.218 0.013 0.089 0.007 0.045 0.016 0.015 0.053 0.263 0.037 0.005 0.018 0.008 50 D 0.021 0.044 0.035 0.084 0.008 0.293 0.006 0.019 0.021 0.026 0.085 0.131 0.199 0.002 0.009 0.019 51 W 0.015 0.013 0.019 0.016 0.006 0.068 0.008 0.005 0.005 0.004 0.484 0.104 0.236 0.006 0.002 0.008 52 Q 0.007 0.037 0.026 0.022 0.001 0.013 0.003 0.009 0.001 0.001 0.074 0.536 0.250 0.001 0.016 0.003 53 D 0.003 0.003 0.010 0.011 0.001 0.054 0.003 0.002 0.003 0.004 0.021 0.092 0.766 0.002 0.003 0.022 54 T 0.003 0.003 0.008 0.003 0.001 0.018 0.002 0.001 0.001 0.001 0.102 0.032 0.818 0.002 0.002 0.003 55 K 0.001 0.004 0.005 0.003 0.001 0.004 0.002 0.001 0.001 0.001 0.022 0.112 0.841 0.001 0.002 0.002 56 R 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.004 0.015 0.971 0.001 0.001 0.003 57 I 0.001 0.001 0.002 0.001 0.001 0.004 0.005 0.001 0.001 0.001 0.005 0.012 0.955 0.010 0.001 0.004 58 F 0.001 0.001 0.002 0.001 0.001 0.003 0.009 0.001 0.001 0.001 0.008 0.011 0.941 0.012 0.010 0.001 59 G 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.009 0.968 0.001 0.008 0.004 60 G 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.013 0.975 0.001 0.001 0.004 61 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.014 0.976 0.001 0.001 0.001 62 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.984 0.001 0.001 0.001 63 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 64 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.994 0.001 0.001 0.001 65 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.993 0.001 0.001 0.001 66 E 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.970 0.017 0.001 0.003 67 E 0.001 0.003 0.004 0.005 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.003 0.925 0.008 0.037 0.007 68 G 0.001 0.001 0.014 0.003 0.001 0.003 0.021 0.001 0.001 0.001 0.002 0.002 0.854 0.010 0.009 0.079 69 A 0.015 0.008 0.018 0.006 0.005 0.011 0.019 0.002 0.001 0.001 0.012 0.011 0.848 0.017 0.008 0.018 70 A 0.001 0.001 0.001 0.001 0.046 0.001 0.093 0.001 0.001 0.001 0.001 0.001 0.010 0.841 0.001 0.002 71 E 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.099 0.001 0.001 0.001 0.001 0.004 0.001 0.889 0.001 72 G 0.002 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.191 0.058 0.002 0.001 0.008 0.001 0.001 0.724 73 K 0.978 0.003 0.008 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 74 K 0.011 0.023 0.323 0.026 0.001 0.533 0.002 0.001 0.001 0.003 0.004 0.034 0.031 0.001 0.001 0.005 75 V 0.003 0.015 0.013 0.042 0.004 0.359 0.002 0.001 0.001 0.001 0.483 0.014 0.060 0.001 0.001 0.001 76 T 0.001 0.471 0.014 0.051 0.001 0.004 0.002 0.002 0.001 0.001 0.007 0.415 0.029 0.001 0.002 0.001 77 D 0.007 0.006 0.064 0.284 0.003 0.020 0.007 0.003 0.007 0.001 0.014 0.017 0.513 0.004 0.008 0.042 78 L 0.013 0.010 0.607 0.040 0.023 0.010 0.088 0.001 0.001 0.001 0.009 0.005 0.126 0.030 0.003 0.033 79 T 0.012 0.046 0.088 0.204 0.004 0.164 0.004 0.130 0.002 0.005 0.017 0.031 0.207 0.002 0.076 0.010 80 G 0.005 0.005 0.009 0.016 0.011 0.377 0.006 0.002 0.017 0.042 0.220 0.014 0.244 0.005 0.001 0.028 81 E 0.030 0.124 0.005 0.023 0.001 0.004 0.001 0.014 0.001 0.001 0.312 0.356 0.126 0.001 0.003 0.001 82 D 0.001 0.001 0.001 0.002 0.001 0.181 0.001 0.001 0.002 0.002 0.008 0.302 0.499 0.001 0.001 0.002 83 V 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.096 0.012 0.888 0.001 0.001 0.001 84 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.311 0.683 0.001 0.001 0.001 85 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 86 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 87 C 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 88 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 89 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 90 L 0.001 0.001 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.931 0.039 0.005 0.019 91 M 0.001 0.001 0.005 0.001 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.912 0.039 0.017 0.008 92 K 0.001 0.002 0.015 0.001 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.770 0.046 0.049 0.094 93 D 0.008 0.005 0.024 0.002 0.001 0.006 0.063 0.001 0.001 0.001 0.009 0.004 0.645 0.055 0.041 0.133 94 T 0.020 0.035 0.099 0.004 0.001 0.019 0.019 0.004 0.001 0.001 0.044 0.025 0.591 0.008 0.076 0.055 95 K 0.042 0.059 0.100 0.019 0.001 0.027 0.016 0.003 0.007 0.005 0.092 0.102 0.404 0.019 0.013 0.094 96 T 0.042 0.029 0.064 0.015 0.001 0.092 0.009 0.003 0.001 0.001 0.053 0.172 0.492 0.003 0.011 0.011 97 W 0.003 0.014 0.032 0.007 0.001 0.062 0.007 0.003 0.001 0.001 0.219 0.061 0.571 0.004 0.003 0.011 98 M 0.001 0.010 0.006 0.006 0.001 0.017 0.003 0.002 0.001 0.001 0.035 0.300 0.612 0.001 0.004 0.002 99 D 0.001 0.001 0.002 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.030 0.038 0.911 0.001 0.001 0.002 100 K 0.001 0.002 0.003 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.041 0.048 0.888 0.002 0.001 0.006 101 Y 0.001 0.001 0.003 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.002 0.046 0.940 0.001 0.002 0.001 102 R 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.004 0.002 0.983 0.002 0.001 0.002 103 T 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.011 0.979 0.001 0.001 0.001 104 K 0.001 0.003 0.004 0.003 0.001 0.003 0.006 0.001 0.001 0.001 0.002 0.009 0.856 0.044 0.003 0.066 105 L 0.001 0.003 0.024 0.003 0.001 0.005 0.026 0.001 0.001 0.001 0.004 0.004 0.859 0.018 0.044 0.008 106 N 0.001 0.002 0.019 0.002 0.001 0.022 0.006 0.003 0.001 0.001 0.009 0.006 0.872 0.006 0.028 0.022 107 D 0.009 0.008 0.005 0.006 0.001 0.004 0.002 0.002 0.002 0.001 0.173 0.016 0.729 0.007 0.005 0.031 108 S 0.027 0.017 0.020 0.005 0.001 0.009 0.038 0.001 0.002 0.001 0.014 0.137 0.559 0.127 0.007 0.037 109 I 0.003 0.018 0.297 0.015 0.001 0.004 0.050 0.003 0.001 0.001 0.005 0.011 0.476 0.005 0.091 0.022 110 G 0.005 0.022 0.187 0.059 0.008 0.034 0.051 0.004 0.005 0.004 0.007 0.012 0.423 0.015 0.009 0.156 111 R 0.087 0.026 0.087 0.073 0.056 0.069 0.106 0.015 0.003 0.005 0.079 0.014 0.254 0.088 0.013 0.025 112 D 0.010 0.135 0.082 0.054 0.022 0.079 0.046 0.076 0.008 0.006 0.116 0.070 0.140 0.043 0.089 0.024