# List of top-scoring protein chains for T0386.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g03A 194 1.85e-18 2f6sA 201 1.72e-17 1fpwA 190 1.41e+00 1rec a.39.1.5 17329 1d5rA 324 2.04e+00 1d5rA b.7.1.1,c.45.1.1 23181,32697 1jotA 133 2.32e+00 1jotA 1fds 327 3.57e+00 1fds c.2.1.2 29838 1fdw 327 3.60e+00 1fds c.2.1.2 29845 1fduA 327 3.60e+00 1fds c.2.1.2 29848 1iol 327 3.73e+00 1fds c.2.1.2 29842 1h32A 261 3.74e+00 a.3.1.8,a.3.1.8 76618,76619 1jtvA 327 3.76e+00 c.2.1.2 84230 1xxqA 161 4.29e+00 2d2mB 142 4.75e+00 1toqA 133 4.80e+00 1fvrA 327 5.75e+00 d.144.1.7 60047 1ugxA 133 6.73e+00 1m26A 133 6.83e+00 1j3nA 408 7.38e+00 c.95.1.1,c.95.1.1 84074,84075 2cq4A 114 7.46e+00 1tul 108 7.75e+00 1tul b.85.5.1 28373 1vkpA 383 8.23e+00 d.126.1.6 108686 1k6mA 432 9.38e+00 c.37.1.7,c.60.1.4 77275,77276 2bdtA 189 1.13e+01 2c6nA 612 1.31e+01 1ovnA 248 1.41e+01 a.71.1.1,c.47.1.7 93602,93603 2gk9A 401 1.51e+01 1a27 289 1.53e+01 1fds c.2.1.2 29839 1bjfA 193 1.55e+01 1rec a.39.1.5 17331 1gjwA 637 1.65e+01 b.71.1.1,c.1.8.1 60582,60583 2d0sA 79 1.66e+01 1z40A 336 1.75e+01 1txiA 263 1.75e+01 1ie9A 259 1.81e+01 1db1A a.123.1.1 62318 1fx8A 281 1.88e+01 f.19.1.1 43651 1ldfA 281 1.92e+01 f.19.1.1 73845 1v5xA 203 1.97e+01 c.1.2.4 100377 1u2xA 474 2.01e+01 c.72.1.3 107622 1sxjE 354 2.56e+01 a.80.1.1,c.37.1.20 106089,106090 1bkb 136 2.60e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 4thiA 362 2.82e+01 2thiA c.94.1.1 35793 3thiA 371 2.88e+01 2thiA c.94.1.1 35792 1wbpA 397 2.88e+01 2thiA 379 2.90e+01 2thiA c.94.1.1 35794 1wf0A 88 3.03e+01 2b3oA 532 3.43e+01 2cx5A 158 3.44e+01 1rqcA 185 3.66e+01 d.167.1.1 97732 1ry9A 145 3.85e+01 d.198.1.1 98094 2cohA 202 3.88e+01 1gkrA 458 3.96e+01 b.92.1.3,c.1.9.6 70251,70252 1ojlA 304 4.04e+01 1gaeO 330 4.25e+01 1dssG c.2.1.3,d.81.1.1 29954,39869 1s7cA 331 4.28e+01 c.2.1.3,d.81.1.1 105346,105347 1gadO 330 4.28e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 2cqjA 71 4.39e+01 1ynrA 80 4.58e+01 1ydpA 275 4.77e+01 1yewB 247 4.80e+01 2h3lA 103 4.88e+01 1iruA 246 5.09e+01 d.153.1.4 71352 1ku9A 152 5.12e+01 a.4.5.36 77544 2boqA 331 5.12e+01 1gwz 299 5.25e+01 2shpA c.45.1.2 32685 1fprA 284 5.30e+01 2shpA c.45.1.2 59949 2d9eA 121 5.33e+01 1rtrA 301 5.37e+01 a.128.1.1 97820 6paz 123 5.60e+01 1bqk b.6.1.1 22886 1gz5A 456 5.61e+01 c.87.1.6 76406 1jymA 183 5.77e+01 d.167.1.1 71957 1uqtA 482 5.78e+01 c.87.1.6 99794 1zjrA 211 5.97e+01 1fs7A 485 5.98e+01 1qdbA a.138.1.3 19691 1fs9A 507 6.14e+01 1qdbA a.138.1.3 19693 1w8aA 192 6.39e+01 1mkp 144 6.40e+01 1vhrA c.45.1.1 32654 1hruA 188 6.55e+01 1hruA d.115.1.1 40926 1rl4A 188 6.60e+01 d.167.1.1 97636 2d31A 276 6.61e+01 1hgxA 183 6.68e+01 1tc1A c.61.1.1 34027 2gb7A 305 6.74e+01 4paz 123 6.77e+01 1bqk b.6.1.1 22881 2ew8A 249 6.87e+01 1qhhD 169 7.03e+01 1pjr 1j9qA 341 7.46e+01 1nif b.6.1.3,b.6.1.3 62765,62766 1e2aA 105 7.55e+01 1e2aA a.7.2.1 16322 1npnA 343 7.64e+01 b.6.1.3,b.6.1.3 85965,85966 1tsjA 139 7.65e+01 1gmlA 178 7.97e+01 c.8.5.2 70273 2e2aA 105 8.20e+01 a.7.2.1 88499 1tqzA 133 8.26e+01 1m53A 570 8.30e+01 b.71.1.1,c.1.8.1 84805,84806 1p0iA 529 8.35e+01 c.69.1.1 93867